| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is ciaH [H]
Identifier: 126699295
GI number: 126699295
Start: 1961868
End: 1963100
Strand: Direct
Name: ciaH [H]
Synonym: CD1689
Alternate gene names: 126699295
Gene position: 1961868-1963100 (Clockwise)
Preceding gene: 126699294
Following gene: 126699296
Centisome position: 45.73
GC content: 26.03
Gene sequence:
>1233_bases ATGATAAATAAGAATGTATTTACCAGTACTAAAAATCATTTAATAAAAATGTATATTATTGTAGTAGGTAGTTTTTTAAT AATCTTTTCTATATTTATATACTCATATTTTAGGGGACTTACATATAGTGGAATTGATAGTGAGATAAATGATGAACTTG AATATATAGTCTCTCAATTTAAAAGAACTTCATTTTTGAACCCAATAAGACTGAAAGATCCTAAAGATATGGTGTATGTA TATGAAGATGGAAGGATAAGTTACTATACTCAAAATGAATATTTTGATGAGTTACTTCCAGATAGAAGACTAGATAAAAA AAATTCGTTTTTTAAATACACAGAAAATGGATATACTTTTAGAGAATTAAATGTAGATGTAGGTAGATACCAAATACAGA TAATTAGAAATATAGATTCTGAGATGAATTCTTTGAGACAGCTTACATCTGTTCTTATAATTGGAATATTAATTTCTGTA ATAATTACTTACTTTGTGGCTGTATATCTCACTAGAAAAGCTTTAATTCCAATAGAAACAGCATGGAAAAATCAAGCTAA GTTTATACAAGATGCTTCTCATGAATTAAGAACACCAATAACAATAGTTTCATCAAAATTAGAAAGTATGTTAAAATCCC CAGAAAGTACAGTAAATGATGAAGTTGAAACAATAGCTACTGCAATGAAGGAAACTAGAAGACTTAAAAAAATGATAACT GATTTATTGTCTCTTACTAAAGAGGACTCTATTGTTAAAGTTAATTTAGAAGAAATAGATTTAGAAAAGTTATTGGAAGA AATATCAGAAGACTATATTGACATTGCTGAGTTTCAGGAAAAAAGATTCGTGTTTAATTCTAAACTGAAGAATAAAGTTA TAATAACAGATAAAAATAAATTAAGACAACTTATATTAATTTTCATTGATAATGCCTTTAAGTATACAAAATTGGGTGAT GAGATAGCATTAGAATTGAAAGAAGATATAGAGGATGAGGTAACTTTACTTATAAGTGATACTGGTATAGGCATAAAAAA AGAAGAGATACCTCTTATATTTGATAGATTTTTTAGAAGTGAAAATGTAAGAAATAAAGATTTAGAAGGTTCTGGAATAG GACTTTCAATAGCTCGCATGATTAGTTTAAACTTATCTATTGATATAAATGTAACTTCTGATGTAGATATTGGAACTACA TTTGAATTGTCAATACCAAAAAAGTTAAAATAA
Upstream 100 bases:
>100_bases GAAATAGTGGAAGTATATGTAAGTAATCTAAGAAAAAAACTAAGTAAATATGGATATGATAAATATATTAAAACTAAACG TAAGGTAGGATATATATTCG
Downstream 100 bases:
>100_bases TAAAAATATAAAAAATTGTTTTTAGAAATGAAGAATGGGTATACTAATTAGTATAAAATATAAAAAGACCTTATAAAAGT AAATTTATATTTATAAATTT
Product: two-component sensor histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 410; Mature: 410
Protein sequence:
>410_residues MINKNVFTSTKNHLIKMYIIVVGSFLIIFSIFIYSYFRGLTYSGIDSEINDELEYIVSQFKRTSFLNPIRLKDPKDMVYV YEDGRISYYTQNEYFDELLPDRRLDKKNSFFKYTENGYTFRELNVDVGRYQIQIIRNIDSEMNSLRQLTSVLIIGILISV IITYFVAVYLTRKALIPIETAWKNQAKFIQDASHELRTPITIVSSKLESMLKSPESTVNDEVETIATAMKETRRLKKMIT DLLSLTKEDSIVKVNLEEIDLEKLLEEISEDYIDIAEFQEKRFVFNSKLKNKVIITDKNKLRQLILIFIDNAFKYTKLGD EIALELKEDIEDEVTLLISDTGIGIKKEEIPLIFDRFFRSENVRNKDLEGSGIGLSIARMISLNLSIDINVTSDVDIGTT FELSIPKKLK
Sequences:
>Translated_410_residues MINKNVFTSTKNHLIKMYIIVVGSFLIIFSIFIYSYFRGLTYSGIDSEINDELEYIVSQFKRTSFLNPIRLKDPKDMVYV YEDGRISYYTQNEYFDELLPDRRLDKKNSFFKYTENGYTFRELNVDVGRYQIQIIRNIDSEMNSLRQLTSVLIIGILISV IITYFVAVYLTRKALIPIETAWKNQAKFIQDASHELRTPITIVSSKLESMLKSPESTVNDEVETIATAMKETRRLKKMIT DLLSLTKEDSIVKVNLEEIDLEKLLEEISEDYIDIAEFQEKRFVFNSKLKNKVIITDKNKLRQLILIFIDNAFKYTKLGD EIALELKEDIEDEVTLLISDTGIGIKKEEIPLIFDRFFRSENVRNKDLEGSGIGLSIARMISLNLSIDINVTSDVDIGTT FELSIPKKLK >Mature_410_residues MINKNVFTSTKNHLIKMYIIVVGSFLIIFSIFIYSYFRGLTYSGIDSEINDELEYIVSQFKRTSFLNPIRLKDPKDMVYV YEDGRISYYTQNEYFDELLPDRRLDKKNSFFKYTENGYTFRELNVDVGRYQIQIIRNIDSEMNSLRQLTSVLIIGILISV IITYFVAVYLTRKALIPIETAWKNQAKFIQDASHELRTPITIVSSKLESMLKSPESTVNDEVETIATAMKETRRLKKMIT DLLSLTKEDSIVKVNLEEIDLEKLLEEISEDYIDIAEFQEKRFVFNSKLKNKVIITDKNKLRQLILIFIDNAFKYTKLGD EIALELKEDIEDEVTLLISDTGIGIKKEEIPLIFDRFFRSENVRNKDLEGSGIGLSIARMISLNLSIDINVTSDVDIGTT FELSIPKKLK
Specific function: Member of the two-component regulatory system CiaH/CiaR. Involved in early steps of competence regulation and in penicillin susceptibility. Probably phosphorylates CiaR [H]
COG id: COG0642
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
Organism=Escherichia coli, GI1786600, Length=225, Percent_Identity=28, Blast_Score=101, Evalue=8e-23, Organism=Escherichia coli, GI1786783, Length=231, Percent_Identity=29.8701298701299, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI145693157, Length=232, Percent_Identity=29.3103448275862, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI48994928, Length=234, Percent_Identity=29.9145299145299, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1788393, Length=206, Percent_Identity=28.1553398058252, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1788713, Length=227, Percent_Identity=25.9911894273128, Blast_Score=81, Evalue=1e-16, Organism=Escherichia coli, GI1790346, Length=194, Percent_Identity=28.3505154639175, Blast_Score=79, Evalue=8e-16, Organism=Escherichia coli, GI1790436, Length=262, Percent_Identity=26.3358778625954, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI87082128, Length=229, Percent_Identity=25.3275109170306, Blast_Score=65, Evalue=9e-12, Organism=Escherichia coli, GI1788279, Length=198, Percent_Identity=28.2828282828283, Blast_Score=62, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 47585; Mature: 47585
Theoretical pI: Translated: 5.00; Mature: 5.00
Prosite motif: PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MINKNVFTSTKNHLIKMYIIVVGSFLIIFSIFIYSYFRGLTYSGIDSEINDELEYIVSQF CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH KRTSFLNPIRLKDPKDMVYVYEDGRISYYTQNEYFDELLPDRRLDKKNSFFKYTENGYTF HHHHCCCCCCCCCCCCEEEEEECCEEEEEECHHHHHHHCCCCCCCCCCCCEEECCCCEEE RELNVDVGRYQIQIIRNIDSEMNSLRQLTSVLIIGILISVIITYFVAVYLTRKALIPIET EEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH AWKNQAKFIQDASHELRTPITIVSSKLESMLKSPESTVNDEVETIATAMKETRRLKKMIT HHCHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH DLLSLTKEDSIVKVNLEEIDLEKLLEEISEDYIDIAEFQEKRFVFNSKLKNKVIITDKNK HHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHH LRQLILIFIDNAFKYTKLGDEIALELKEDIEDEVTLLISDTGIGIKKEEIPLIFDRFFRS HHHHHHHHCCCCCHHHHCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHCC ENVRNKDLEGSGIGLSIARMISLNLSIDINVTSDVDIGTTFELSIPKKLK CCCCCCCCCCCCCCHHEEHHEEEEEEEEEEECCCCCCCCEEEECCCCCCC >Mature Secondary Structure MINKNVFTSTKNHLIKMYIIVVGSFLIIFSIFIYSYFRGLTYSGIDSEINDELEYIVSQF CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH KRTSFLNPIRLKDPKDMVYVYEDGRISYYTQNEYFDELLPDRRLDKKNSFFKYTENGYTF HHHHCCCCCCCCCCCCEEEEEECCEEEEEECHHHHHHHCCCCCCCCCCCCEEECCCCEEE RELNVDVGRYQIQIIRNIDSEMNSLRQLTSVLIIGILISVIITYFVAVYLTRKALIPIET EEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH AWKNQAKFIQDASHELRTPITIVSSKLESMLKSPESTVNDEVETIATAMKETRRLKKMIT HHCHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH DLLSLTKEDSIVKVNLEEIDLEKLLEEISEDYIDIAEFQEKRFVFNSKLKNKVIITDKNK HHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHH LRQLILIFIDNAFKYTKLGDEIALELKEDIEDEVTLLISDTGIGIKKEEIPLIFDRFFRS HHHHHHHHCCCCCHHHHCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHCC ENVRNKDLEGSGIGLSIARMISLNLSIDINVTSDVDIGTTFELSIPKKLK CCCCCCCCCCCCCCHHEEHHEEEEEEEEEEECCCCCCCCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11463916 [H]