| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is hisD [H]
Identifier: 126699185
GI number: 126699185
Start: 1833688
End: 1834953
Strand: Direct
Name: hisD [H]
Synonym: CD1582
Alternate gene names: 126699185
Gene position: 1833688-1834953 (Clockwise)
Preceding gene: 126699184
Following gene: 126699188
Centisome position: 42.74
GC content: 31.75
Gene sequence:
>1266_bases ATGAAAAGTATTAAAACATCAAGTATGAAAGAAAAGGTAGATGAAAAGATATTAAGAGAGCAAGTAAGTTCTATAATAGA AGATATAAGAAATAATAAGGATGTTGCACTTAAAAAATATAATGAGAAGTTTGATAGAAATACAAGAGATGAATTTAGAA TTACTAAGGAAGAAATAAAGGAAGCTTATAAGCATGTAGATGACGAATTTATAAATAACTTAAAGATTGCTGCCAAAAAT ATAAGAGAATTTGCTAAAGCTCAAAAACTAAGTTTTGAAAACCCTTTTGAAAAAGAAATTTATCCAGGTGTAATCTTAGG TCAAACTAATATTCCAATAGAGTCATGTCTTGCATATGTTCCAGGAGGTCAGTATCCATTGTTTTCAACAGCTCTTATGC TTATAATACCTGCAAAAGTAGCAGGAGTAAAAAGAATAGTGGCATGTTCACCAACTATGAAAAATACTGAAAAGATAAAT CCTAAGACATTGGTAGCTATGGATATAGCAGGTGCTGATGAAATATATGCAACTGGAGGAGTTCAAGCTATAGCAGCATT TACATATGGAACAGAAAAGATTAATCCAGTTGACATAATTGTAGGACCAGGAAATAAGTTTGTAACTGAAGCTAAAAGAC AATGTTATGGACAAGTAGGGATTGATTTTGTCGCTGGGCCAAGTGAAGTTCTTATAATAGCGGATGAAACTTCAAATCCA GTTTATATTGCAGCTGATTTATTAGCACAATGTGAGCATGATTTAAATGCAAGAGGAATATTATTGACAAATAGCTTGGA AGTAGCACAAAAAGTTGAAAAAAATATAGAAAGTATGCTAAAAGATTTGCCAACAAAGGACATATCATATAGTTCATGGG AAAATAATGGAGAGATAATATTGGTTGATGATATGGAAGAAGCCATTAAAATAAGTAATTTTTATGCACCAGAACATTTA GAAGTTGCAGTAAATGAGTATAATGATATTTGTGATAGATTAACTAACTATGGTTCTTTATTTATTGGAAATCTTTCTGC TGAGGTGTTTGGTGACTATGTTTCAGGTACCAATCATACATTACCAACACTTAAAGCATCAAGATATACTGGTGGTGTTT GGGTTGGAACTTTTATCAAAACTTGTACAAAGCAGATATTTAATGAAAAAGCTATACAATCATTAGCACCTGTAGCTGAA AAGCTGGCAAAAGAAGAGGGATTATATGCACATGCAAAGGCTGCTGAGGTTAGGTTTAAAAAGTAG
Upstream 100 bases:
>100_bases AGGATAATATTGTAAAATAAATGAGTATGAGATTGTAAAATAAATGAGTATGAGATTGTAAAATAAATGAGTATGAGATT GTAAAATTAGGAGGTAAAAA
Downstream 100 bases:
>100_bases TAAAAAATTTTATTTTGGCAGTCGAGATTTAGTATTAGACTGAGATAAGGAAAACGCTGAGAACCTGAATAAATACTATA TTTTGTGGGCCTCGGCGTTT
Product: histidinol dehydrogenase
Products: NA
Alternate protein names: HDH 1 [H]
Number of amino acids: Translated: 421; Mature: 421
Protein sequence:
>421_residues MKSIKTSSMKEKVDEKILREQVSSIIEDIRNNKDVALKKYNEKFDRNTRDEFRITKEEIKEAYKHVDDEFINNLKIAAKN IREFAKAQKLSFENPFEKEIYPGVILGQTNIPIESCLAYVPGGQYPLFSTALMLIIPAKVAGVKRIVACSPTMKNTEKIN PKTLVAMDIAGADEIYATGGVQAIAAFTYGTEKINPVDIIVGPGNKFVTEAKRQCYGQVGIDFVAGPSEVLIIADETSNP VYIAADLLAQCEHDLNARGILLTNSLEVAQKVEKNIESMLKDLPTKDISYSSWENNGEIILVDDMEEAIKISNFYAPEHL EVAVNEYNDICDRLTNYGSLFIGNLSAEVFGDYVSGTNHTLPTLKASRYTGGVWVGTFIKTCTKQIFNEKAIQSLAPVAE KLAKEEGLYAHAKAAEVRFKK
Sequences:
>Translated_421_residues MKSIKTSSMKEKVDEKILREQVSSIIEDIRNNKDVALKKYNEKFDRNTRDEFRITKEEIKEAYKHVDDEFINNLKIAAKN IREFAKAQKLSFENPFEKEIYPGVILGQTNIPIESCLAYVPGGQYPLFSTALMLIIPAKVAGVKRIVACSPTMKNTEKIN PKTLVAMDIAGADEIYATGGVQAIAAFTYGTEKINPVDIIVGPGNKFVTEAKRQCYGQVGIDFVAGPSEVLIIADETSNP VYIAADLLAQCEHDLNARGILLTNSLEVAQKVEKNIESMLKDLPTKDISYSSWENNGEIILVDDMEEAIKISNFYAPEHL EVAVNEYNDICDRLTNYGSLFIGNLSAEVFGDYVSGTNHTLPTLKASRYTGGVWVGTFIKTCTKQIFNEKAIQSLAPVAE KLAKEEGLYAHAKAAEVRFKK >Mature_421_residues MKSIKTSSMKEKVDEKILREQVSSIIEDIRNNKDVALKKYNEKFDRNTRDEFRITKEEIKEAYKHVDDEFINNLKIAAKN IREFAKAQKLSFENPFEKEIYPGVILGQTNIPIESCLAYVPGGQYPLFSTALMLIIPAKVAGVKRIVACSPTMKNTEKIN PKTLVAMDIAGADEIYATGGVQAIAAFTYGTEKINPVDIIVGPGNKFVTEAKRQCYGQVGIDFVAGPSEVLIIADETSNP VYIAADLLAQCEHDLNARGILLTNSLEVAQKVEKNIESMLKDLPTKDISYSSWENNGEIILVDDMEEAIKISNFYAPEHL EVAVNEYNDICDRLTNYGSLFIGNLSAEVFGDYVSGTNHTLPTLKASRYTGGVWVGTFIKTCTKQIFNEKAIQSLAPVAE KLAKEEGLYAHAKAAEVRFKK
Specific function: Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine [H]
COG id: COG0141
COG function: function code E; Histidinol dehydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the histidinol dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1788331, Length=407, Percent_Identity=39.5577395577396, Blast_Score=298, Evalue=4e-82, Organism=Saccharomyces cerevisiae, GI6319819, Length=406, Percent_Identity=38.6699507389163, Blast_Score=255, Evalue=8e-69,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016161 - InterPro: IPR022695 - InterPro: IPR001692 - InterPro: IPR012131 [H]
Pfam domain/function: PF00815 Histidinol_dh [H]
EC number: =1.1.1.23 [H]
Molecular weight: Translated: 46771; Mature: 46771
Theoretical pI: Translated: 5.27; Mature: 5.27
Prosite motif: PS00611 HISOL_DEHYDROGENASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSIKTSSMKEKVDEKILREQVSSIIEDIRNNKDVALKKYNEKFDRNTRDEFRITKEEIK CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHCCCCCHHHHCCHHHHH EAYKHVDDEFINNLKIAAKNIREFAKAQKLSFENPFEKEIYPGVILGQTNIPIESCLAYV HHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCEEECCCCCCHHHHHHHC PGGQYPLFSTALMLIIPAKVAGVKRIVACSPTMKNTEKINPKTLVAMDIAGADEIYATGG CCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCEEEEEEECCCCCCEECCC VQAIAAFTYGTEKINPVDIIVGPGNKFVTEAKRQCYGQVGIDFVAGPSEVLIIADETSNP HHEEHHEECCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEECCCEEEEEEECCCCC VYIAADLLAQCEHDLNARGILLTNSLEVAQKVEKNIESMLKDLPTKDISYSSWENNGEII EEEHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEE LVDDMEEAIKISNFYAPEHLEVAVNEYNDICDRLTNYGSLFIGNLSAEVFGDYVSGTNHT EEECHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCC LPTLKASRYTGGVWVGTFIKTCTKQIFNEKAIQSLAPVAEKLAKEEGLYAHAKAAEVRFK CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHCCCC K C >Mature Secondary Structure MKSIKTSSMKEKVDEKILREQVSSIIEDIRNNKDVALKKYNEKFDRNTRDEFRITKEEIK CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHCCCCCHHHHCCHHHHH EAYKHVDDEFINNLKIAAKNIREFAKAQKLSFENPFEKEIYPGVILGQTNIPIESCLAYV HHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCEEECCCCCCHHHHHHHC PGGQYPLFSTALMLIIPAKVAGVKRIVACSPTMKNTEKINPKTLVAMDIAGADEIYATGG CCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCEEEEEEECCCCCCEECCC VQAIAAFTYGTEKINPVDIIVGPGNKFVTEAKRQCYGQVGIDFVAGPSEVLIIADETSNP HHEEHHEECCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEECCCEEEEEEECCCCC VYIAADLLAQCEHDLNARGILLTNSLEVAQKVEKNIESMLKDLPTKDISYSSWENNGEII EEEHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEE LVDDMEEAIKISNFYAPEHLEVAVNEYNDICDRLTNYGSLFIGNLSAEVFGDYVSGTNHT EEECHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCC LPTLKASRYTGGVWVGTFIKTCTKQIFNEKAIQSLAPVAEKLAKEEGLYAHAKAAEVRFK CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHCCCC K C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA