| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is pgm1 [H]
Identifier: 126699180
GI number: 126699180
Start: 1825729
End: 1827426
Strand: Direct
Name: pgm1 [H]
Synonym: CD1577
Alternate gene names: 126699180
Gene position: 1825729-1827426 (Clockwise)
Preceding gene: 126699179
Following gene: 126699181
Centisome position: 42.56
GC content: 29.51
Gene sequence:
>1698_bases ATGGATTATACTAAAACTTATGAAGAGTGGATAAAGGGTTCATATTTTGATGAAGATACAAAGCTAGAGTTGGAGAATAT AAAAAATAATGAAAAAGAAATAGAGGATAGATTCTATAAGGATTTAGAATTTGGGACTGCGGGTCTTAGAGGAATAATTG AAGCAGGAACGAATAGAATAAATAAGTACACAGTTAGAAGAGCTACTTTTGGATTGGCAAACTATATATTAGAAAACACA ACAAAAGAAGAAACAAGTAGAGGAGTAGTAATAGCTCATGATAATAGACACAAGTCTAGACAATTCTGTATAGAATCTGC AAATACTTTGGCAGCATGTGGTATAAAAGCATATATATTTGATAGTTTGAGAACTACTCCAGAATTATCTTTTGCTGTTA GAAGCTTAAACGCAATCGCTGGTATAGTCATAACAGCAAGCCATAATCCTCCAGAATATAATGGATATAAGGTATACTGG GAAGATGGAGCACAAGTTATGCCAGAGATTGCAAATGCAATAACAGAGAAAGTAAATAGTATACATGATTATAGTACAAT ACCAACCTTAACGGAAGCTAATAAAAATTTGGTAGTTTTGTTGGACGAATCACAAGATACTAAATTTATAGAAGCAGTAA AAAGCCAAATTATAAGAAAAGATTTAGTTAAAAATGTAGGTAAAAGCTTTAAGATAGTTTATACACCTCTTTGTGGAACA GGGAATGTTCCAATAAGAAGAGCATTGAAAGAAGTTGGTTTTGAAAATATAATTGTAGTTCCAGAAGAAGAAAATCCAGA CCCAAATTTTGCAGGGCTTGATTATCCAAATCCAGAAGAGAAAAAAGCTTTAAATAGAGGTATATTACTCGCAAAAGAAA AAGGAGCAGACCTTGTAATAGCAACTGACCCAGATTGTGATAGAGTAGGTGTAGCAGTAAAAACTACTACAGGTGAGTAT GCTTTACTTACAGGAAATCAAATTGGTGGTATGCTGACACATTATATAATAGAAGGATTAAAAGAAAATAACAAATTAAA AGAAAATCCTACAATAATAAAAACCATAGTTACATCAGAATTTGGAGCAGATATAGCTAAAGCAAATAATGTTGATGTAT TAAATGTTCTTACAGGTTTTAAATTTATTGGTGAAAAAATAAAATTATTTGAACAAAATAAAAATAGAAGTTATGTATTT GGATATGAAGAAAGTTATGGTTACTTAGTTGGGACTCATGCTAGAGATAAAGATGGTGTAGTTTCTTCATTGTTAATATC TGAAATGGCAGCATTTTACTATTCAAAAGGTATGAGTTTATATGATGGTTTAATAGAACTTTATAAAAAGTATGGATTTT TCAAAGAACAGACTATATCTTTGACTTTAAAAGGTATAGAAGGTGTAGAAAAGATAAAAGAAATAATATCTTATTTTAGA GAAAATCAAATTGATTATATAAATAGTATTAAAGTAGTTGATAAAAAAGATTATAAAAATGGTATAGATAATCTTCCTAA ATCTGATGTTTTAAAATACTTTTTGGAAGATGAATCTTGGGTAGCTATAAGACCATCTGGAACAGAACCAAAACTTAAAT TTTACATAGCTGTAAAAGGAGCTAGTGATATTGAAGCAGATAAAAAGATTCAAGGTTTGAAAAAGTATATAGATGACATG GTCGAAAAATTAAAATAA
Upstream 100 bases:
>100_bases TTAATTCAATTAATAAGTATATAGAAGAGTTATAGATTACATTAAAATGCTTGTTTATGCGTCAGTTGCAATAAATACAT ACAGTAGAGAGGGGTTTATT
Downstream 100 bases:
>100_bases AATATTATTATTTTATAAGATAATTTTGTAATAATATTTATTTAGCTGAAAATTATAATTTACTTTCATTGAGTAGAATA TGGAAATGTTAGTAGAATTG
Product: phosphoglucomutase
Products: NA
Alternate protein names: PGM; Alpha-phosphoglucomutase; Glucose phosphomutase [H]
Number of amino acids: Translated: 565; Mature: 565
Protein sequence:
>565_residues MDYTKTYEEWIKGSYFDEDTKLELENIKNNEKEIEDRFYKDLEFGTAGLRGIIEAGTNRINKYTVRRATFGLANYILENT TKEETSRGVVIAHDNRHKSRQFCIESANTLAACGIKAYIFDSLRTTPELSFAVRSLNAIAGIVITASHNPPEYNGYKVYW EDGAQVMPEIANAITEKVNSIHDYSTIPTLTEANKNLVVLLDESQDTKFIEAVKSQIIRKDLVKNVGKSFKIVYTPLCGT GNVPIRRALKEVGFENIIVVPEEENPDPNFAGLDYPNPEEKKALNRGILLAKEKGADLVIATDPDCDRVGVAVKTTTGEY ALLTGNQIGGMLTHYIIEGLKENNKLKENPTIIKTIVTSEFGADIAKANNVDVLNVLTGFKFIGEKIKLFEQNKNRSYVF GYEESYGYLVGTHARDKDGVVSSLLISEMAAFYYSKGMSLYDGLIELYKKYGFFKEQTISLTLKGIEGVEKIKEIISYFR ENQIDYINSIKVVDKKDYKNGIDNLPKSDVLKYFLEDESWVAIRPSGTEPKLKFYIAVKGASDIEADKKIQGLKKYIDDM VEKLK
Sequences:
>Translated_565_residues MDYTKTYEEWIKGSYFDEDTKLELENIKNNEKEIEDRFYKDLEFGTAGLRGIIEAGTNRINKYTVRRATFGLANYILENT TKEETSRGVVIAHDNRHKSRQFCIESANTLAACGIKAYIFDSLRTTPELSFAVRSLNAIAGIVITASHNPPEYNGYKVYW EDGAQVMPEIANAITEKVNSIHDYSTIPTLTEANKNLVVLLDESQDTKFIEAVKSQIIRKDLVKNVGKSFKIVYTPLCGT GNVPIRRALKEVGFENIIVVPEEENPDPNFAGLDYPNPEEKKALNRGILLAKEKGADLVIATDPDCDRVGVAVKTTTGEY ALLTGNQIGGMLTHYIIEGLKENNKLKENPTIIKTIVTSEFGADIAKANNVDVLNVLTGFKFIGEKIKLFEQNKNRSYVF GYEESYGYLVGTHARDKDGVVSSLLISEMAAFYYSKGMSLYDGLIELYKKYGFFKEQTISLTLKGIEGVEKIKEIISYFR ENQIDYINSIKVVDKKDYKNGIDNLPKSDVLKYFLEDESWVAIRPSGTEPKLKFYIAVKGASDIEADKKIQGLKKYIDDM VEKLK >Mature_565_residues MDYTKTYEEWIKGSYFDEDTKLELENIKNNEKEIEDRFYKDLEFGTAGLRGIIEAGTNRINKYTVRRATFGLANYILENT TKEETSRGVVIAHDNRHKSRQFCIESANTLAACGIKAYIFDSLRTTPELSFAVRSLNAIAGIVITASHNPPEYNGYKVYW EDGAQVMPEIANAITEKVNSIHDYSTIPTLTEANKNLVVLLDESQDTKFIEAVKSQIIRKDLVKNVGKSFKIVYTPLCGT GNVPIRRALKEVGFENIIVVPEEENPDPNFAGLDYPNPEEKKALNRGILLAKEKGADLVIATDPDCDRVGVAVKTTTGEY ALLTGNQIGGMLTHYIIEGLKENNKLKENPTIIKTIVTSEFGADIAKANNVDVLNVLTGFKFIGEKIKLFEQNKNRSYVF GYEESYGYLVGTHARDKDGVVSSLLISEMAAFYYSKGMSLYDGLIELYKKYGFFKEQTISLTLKGIEGVEKIKEIISYFR ENQIDYINSIKVVDKKDYKNGIDNLPKSDVLKYFLEDESWVAIRPSGTEPKLKFYIAVKGASDIEADKKIQGLKKYIDDM VEKLK
Specific function: Catalyzes the interconversion between glucose-6- phosphate and alpha-glucose-1-phosphate. This is the first step in the biosynthesis of diglucosyl-diacylglycerol (Glc2-DAG), i.e. the predominant glycolipid found in B.subtilis membrane, which is also used
COG id: COG1109
COG function: function code G; Phosphomannomutase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphohexose mutase family [H]
Homologues:
Organism=Homo sapiens, GI31377548, Length=592, Percent_Identity=31.9256756756757, Blast_Score=266, Evalue=6e-71, Organism=Homo sapiens, GI63055049, Length=601, Percent_Identity=30.4492512479201, Blast_Score=253, Evalue=3e-67, Organism=Caenorhabditis elegans, GI71993870, Length=565, Percent_Identity=32.7433628318584, Blast_Score=248, Evalue=6e-66, Organism=Caenorhabditis elegans, GI71993878, Length=298, Percent_Identity=33.5570469798658, Blast_Score=149, Evalue=3e-36, Organism=Saccharomyces cerevisiae, GI6323934, Length=556, Percent_Identity=31.1151079136691, Blast_Score=230, Evalue=4e-61, Organism=Drosophila melanogaster, GI20129809, Length=564, Percent_Identity=30.8510638297872, Blast_Score=258, Evalue=6e-69, Organism=Drosophila melanogaster, GI24651977, Length=493, Percent_Identity=31.237322515213, Blast_Score=239, Evalue=4e-63, Organism=Drosophila melanogaster, GI24653722, Length=437, Percent_Identity=30.4347826086957, Blast_Score=207, Evalue=2e-53,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005844 - InterPro: IPR016055 - InterPro: IPR005845 - InterPro: IPR005846 - InterPro: IPR005843 - InterPro: IPR016066 - InterPro: IPR005841 [H]
Pfam domain/function: PF02878 PGM_PMM_I; PF02879 PGM_PMM_II; PF02880 PGM_PMM_III; PF00408 PGM_PMM_IV [H]
EC number: =5.4.2.2 [H]
Molecular weight: Translated: 63650; Mature: 63650
Theoretical pI: Translated: 5.53; Mature: 5.53
Prosite motif: PS00710 PGM_PMM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDYTKTYEEWIKGSYFDEDTKLELENIKNNEKEIEDRFYKDLEFGTAGLRGIIEAGTNRI CCCCHHHHHHHCCCCCCCCCCEEHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCHH NKYTVRRATFGLANYILENTTKEETSRGVVIAHDNRHKSRQFCIESANTLAACGIKAYIF HHHHHHHHHHHHHHHHHHCCCHHHHCCCEEEEECCCCCHHHHHHHCCCHHHHCCHHHHHH DSLRTTPELSFAVRSLNAIAGIVITASHNPPEYNGYKVYWEDGAQVMPEIANAITEKVNS HHHCCCCHHHHHHHHHHHHEEEEEEECCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHH IHDYSTIPTLTEANKNLVVLLDESQDTKFIEAVKSQIIRKDLVKNVGKSFKIVYTPLCGT HHCCCCCCCHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCC GNVPIRRALKEVGFENIIVVPEEENPDPNFAGLDYPNPEEKKALNRGILLAKEKGADLVI CCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCEEEE ATDPDCDRVGVAVKTTTGEYALLTGNQIGGMLTHYIIEGLKENNKLKENPTIIKTIVTSE ECCCCCCCCCEEEEECCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHH FGADIAKANNVDVLNVLTGFKFIGEKIKLFEQNKNRSYVFGYEESYGYLVGTHARDKDGV HCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCCCHH VSSLLISEMAAFYYSKGMSLYDGLIELYKKYGFFKEQTISLTLKGIEGVEKIKEIISYFR HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHHHHHHHHH ENQIDYINSIKVVDKKDYKNGIDNLPKSDVLKYFLEDESWVAIRPSGTEPKLKFYIAVKG CCCCCHHHCEEEEECHHHHHHHCCCCHHHHHHHHHCCCCEEEEECCCCCCCEEEEEEEEC ASDIEADKKIQGLKKYIDDMVEKLK CCCCCHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MDYTKTYEEWIKGSYFDEDTKLELENIKNNEKEIEDRFYKDLEFGTAGLRGIIEAGTNRI CCCCHHHHHHHCCCCCCCCCCEEHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCHH NKYTVRRATFGLANYILENTTKEETSRGVVIAHDNRHKSRQFCIESANTLAACGIKAYIF HHHHHHHHHHHHHHHHHHCCCHHHHCCCEEEEECCCCCHHHHHHHCCCHHHHCCHHHHHH DSLRTTPELSFAVRSLNAIAGIVITASHNPPEYNGYKVYWEDGAQVMPEIANAITEKVNS HHHCCCCHHHHHHHHHHHHEEEEEEECCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHH IHDYSTIPTLTEANKNLVVLLDESQDTKFIEAVKSQIIRKDLVKNVGKSFKIVYTPLCGT HHCCCCCCCHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCC GNVPIRRALKEVGFENIIVVPEEENPDPNFAGLDYPNPEEKKALNRGILLAKEKGADLVI CCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCEEEE ATDPDCDRVGVAVKTTTGEYALLTGNQIGGMLTHYIIEGLKENNKLKENPTIIKTIVTSE ECCCCCCCCCEEEEECCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHH FGADIAKANNVDVLNVLTGFKFIGEKIKLFEQNKNRSYVFGYEESYGYLVGTHARDKDGV HCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCCCHH VSSLLISEMAAFYYSKGMSLYDGLIELYKKYGFFKEQTISLTLKGIEGVEKIKEIISYFR HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHHHHHHHHH ENQIDYINSIKVVDKKDYKNGIDNLPKSDVLKYFLEDESWVAIRPSGTEPKLKFYIAVKG CCCCCHHHCEEEEECHHHHHHHCCCCHHHHHHHHHCCCCEEEEECCCCCCCEEEEEEEEC ASDIEADKKIQGLKKYIDDMVEKLK CCCCCHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377; 2127799 [H]