| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126699173
Identifier: 126699173
GI number: 126699173
Start: 1818353
End: 1818877
Strand: Direct
Name: 126699173
Synonym: CD1570
Alternate gene names: NA
Gene position: 1818353-1818877 (Clockwise)
Preceding gene: 126699171
Following gene: 126699174
Centisome position: 42.38
GC content: 30.1
Gene sequence:
>2901_bases ATGAAGTGTACAAACTTTACTTTCAAAGGAGAGGAAGGTTTAGATATATATACATATAAATGGGAAGATGAAAATATAAA AAAACCAAAGGCAGTTATCCAAATTGCACATGGAATGGCTGAAACTGCACAAAGGTATGAGACTTTTGCCAAGGTACTTA CTAAAAATGGTTATATAGTATATATCAATGACCATAGAGGTCATGGAAAAACTGCAAAGATAATAGAAAATGTTGGACAT TTAGCTGAAAAAGAAGGATTTAGATGTCTTGTAGAGGACATGTATACTTTAACAAATATTATAAAGAAAGAAAATGAAGA TTTGCCAATTTATCTATTTGGACACAGCATGGGTTCATTTGCAAGTCAAAGATATATAATGGATTACAGTAATAATTTAG CTGGTCTTATACTATGTGGTTCAAATGGAAAGCAAGGAATCATTCTAAATCTTGCTCATCTGATAATCAATCGTGAGATT AAAAAGTATGGAAGACGTTCTAAAAGTAATAAAATAAATAATTTGATTAAAAAATAGTTACTCACACTCGTGACTTTAGT CATGAGTTAGTAGCTAAAATAGTCAGCATATAGGGAAACTTATATGTAGAGATAGGATAGAACTATCCAATACTACTTGA ATTGCTAAAAACCCCTAAAGCTAACCAAACTAAAACATAAGGATGAAATAAACCTAAGTGTGAAAGTTACGAAAGTAGAA AAAATTGGTTAGATGGTATAAGGTTAAACCCTAAGTACTTTAAAATGGGCAATCAGCAGGTAAGCTCCGAATAGGAGAAA CTTCAACGACTATTCCTCTTGAGGGAAGTACACTACAAGCTATTGGTAGTGGAAGTGGGTAGACCTTAACGGATAATGCC GAAGGATAAGATATAGTCTGTGCTTACATGAAAGTGTAAGAAGTTCATAAGAGAACTGCATAGGTAGTAGCGAACTTATG TGAACGACAACCTCAAAAATGATAAAAGTTAAGACTTACGGTTCTTATATATGTTATTTAAAAATAAATATAAAAAACCT TCAAAATACTTGTTTTAAGTAATTGCATATTTTAATATTATGATAGGTGATGAAAAATGGAAGTTACTCATAATAGAGGA TATGCATATAGTATGTCAAATATAGACATCCAGTATTATGGGGAGACATCTTTGGAATCCTAGTTATTTCGTTGCTACTG TATCAGAAAATACAGAGGAGCAGATAAGAAAATATAGAAAAAACAAGTAAAGTGAGGTGGCAGTAGTGGAAAAAGCTTAT AAGTTTAGAATGTATCCAAATAAAAAACAACAAGAGTTAATTAACAAAACTTTTGGATGTTGTAGATTTGTATATAATAA GTATCTTGCTAAAAGAATAGAAGTTTATAAAAACAATAAAGAAACTTTTACTTATAAACAGTGTAGTTCTGATTTGACCA ATTTAAAAAAAGAATTAAAATGGCTTAAGGAACCTGACAAATTTTCACTACAAAACGCCTTAAAAGATTTAGATAATGCA TATAAAAAATTCTTTAAAGAAAAATCAGGATTTCCTAAATTTAAATCAAAGAAAATTAATAGATTTTCATATAAAACTAA CTTTACAAATGGAAACATTATGTACTTTAGTCAACATATAAAACTACCTAAACTTGGTATGGTTAAGATAAGGGATAAAC AAGTACCTCAAGGTAGAATACTTAATGCTACTATATCTAAAGAACCAAGTGGTAGATATTATGTATCATTATGCTGTACT GATGTAGACATTGAAGCATTTGAAAATACTAACAATCAGATAGGTTTAGATTTAGGAATTAAAGAATTTTGTATCTCAAG TTGTGGAGACTTTATAGAAAATCCTAAGTATCTTAAGAAGTCATTAAGCAAACTTGCTAAATTACAAAGAGAATTATCGA GAAAAACAATCGGTAGTTTAAATAGAAATAAAGCAAGATTAAAAGTTGCAAGACTTCAAGAACATATAGCTAATCAAAGA AATGATTTTCTACAAAAACTATCTACTAAATTAATAAAAGAGAATGATATTATTTGCATAGAAGATTTACAAGTAAAGAA TATGATTAGAAATCGTAAACTATCTCGCTTAATTTCTGATGTGTCATGGTCAGAATTTATTCGTCAATTAAAATACAAGG CTAATTGGCATGGTAGACAAATTGTAAAGGTAGGTAAATTCTTTGCAAGTTCACAAATATGCAATAAATGTGGGTATAAA AACGAGGAAGTTAAGGACTTAAATGTAAGAGAATGGATTTGTCCTAGTTGTAATGAAACTCACGATAGAGATATAAATGC AAGTATAAATATATTAAAAGAAGGATTAAGACTAATAACGATTCAAAATAAATAACTTATGTAAGAACCGTAGGAACTAC GGGGATAGCCTGTGGAGAATTAGTAAGACATATTTTAGTATGCAAAATTTTATGAAGCAGGAACCCTGTGACTTTAGTCA TGGGAGGTTCAGATTTGGTGGCGAAATAATAAGAAGAAATGAAAAGACTAAGTTTGACTGGTTAAGTAGAGATAAAGAAC AAGTTGAAAAATATATAAATGACCCATTTTGTGGAGTAGTGTGTAGTTGTGGCTTTTTTTATGATTTAGTTCAAGGGTTA AAAGAAATTGAGGATAAAGAAAACTTAAAAAAAGTGCCACTTGATATACCTATTTACATAATATCTGGAGATAAAGACCC CATAGGAAAAAATGGTAAAGGAGTCTTAAGACTAAGGGATAGATATATAAAATTAGGAGTAAAAGATGTAACTTGCAAAC TTTACAAAGATGGAAGGCATGAATTGTTGAATGAAATAAATAGAGAAGAAGTTTTTGAGGATATAATTTGTTGGTTAAAT AATAAAATAGAAATATTGTAA
Upstream 100 bases:
>100_bases TAATAATTCTTAAATTTTTTAGAAAGATTTTGACTTGAAAATACTTGTAATATAATATATAAATTAATATACTGAATAAA ATCAATCTGGAGGGATAATT
Downstream 100 bases:
>100_bases TAAAAAAATATAATGATATATTTGCTTTAAATTTATTTATATATAATATTTGAAAAGTGGATTATGTATATGCAAAGTAG AAAAGAGAGAGCCCAGAAGT
Product: lysophospholipase
Products: NA
Alternate protein names: Alpha/Beta Hydrolase Fold Protein; Alpha/Beta Hydrolase Fold; Alpha/Beta Fold Family Hydrolase; Hydrolase; Hydrolase Alpha/Beta Fold Family; Alpha/Beta Hydrolase; Lipase; Hydrolase Alpha/Beta Hydrolase Fold Family; Acylglycerol Lipase; Lysophospholipase Protein; Lysophospholipase-Like Protein; Monoglyceride Lipase; Alpha/Beta Hydrolase Family Protein; Lysophospholipase L2 PLDB; S33 Family Lysophospholipase; Carboxylic Ester Hydrolase; Alpha/Beta Fold Family Protein Hydrolase; Aminopeptidase; Hydrolase Alpha/Beta Fold Family Protein; Hydrolase Alpha/Beta Domain-Containing Protein; Lysophospholipase/Monoglyceride Lipase; Alpha/Beta Hydrolase Fold-Domain Containing Protein; Monoacylglycerol Lipase
Number of amino acids: Translated: 175; Mature: 175
Protein sequence:
>310_residues MKCTNFTFKGEEGLDIYTYKWEDENIKKPKAVIQIAHGMAETAQRYETFAKVLTKNGYIVYINDHRGHGKTAKIIENVGH LAEKEGFRCLVEDMYTLTNIIKKENEDLPIYLFGHSMGSFASQRYIMDYSNNLAGLILCGSNGKQGIILNLAHLIINREI KKYGRRSKSNKINNLFGGEIIRRNEKTKFDWLSRDKEQVEKYINDPFCGVVCSCGFFYDLVQGLKEIEDKENLKKVPLDI PIYIISGDKDPIGKNGKGVLRLRDRYIKLGVKDVTCKLYKDGRHELLNEINREEVFEDIICWLNNKIEIL
Sequences:
>Translated_175_residues MKCTNFTFKGEEGLDIYTYKWEDENIKKPKAVIQIAHGMAETAQRYETFAKVLTKNGYIVYINDHRGHGKTAKIIENVGH LAEKEGFRCLVEDMYTLTNIIKKENEDLPIYLFGHSMGSFASQRYIMDYSNNLAGLILCGSNGKQGIILNLAHLIINREI KKYGRRSKSNKINNL >Mature_175_residues MKCTNFTFKGEEGLDIYTYKWEDENIKKPKAVIQIAHGMAETAQRYETFAKVLTKNGYIVYINDHRGHGKTAKIIENVGH LAEKEGFRCLVEDMYTLTNIIKKENEDLPIYLFGHSMGSFASQRYIMDYSNNLAGLILCGSNGKQGIILNLAHLIINREI KKYGRRSKSNKINNL
Specific function: Unknown
COG id: COG2267
COG function: function code I; Lysophospholipase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20011; Mature: 20011
Theoretical pI: Translated: 9.42; Mature: 9.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKCTNFTFKGEEGLDIYTYKWEDENIKKPKAVIQIAHGMAETAQRYETFAKVLTKNGYIV CCCCCCEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE YINDHRGHGKTAKIIENVGHLAEKEGFRCLVEDMYTLTNIIKKENEDLPIYLFGHSMGSF EEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCH ASQRYIMDYSNNLAGLILCGSNGKQGIILNLAHLIINREIKKYGRRSKSNKINNL HHCCEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MKCTNFTFKGEEGLDIYTYKWEDENIKKPKAVIQIAHGMAETAQRYETFAKVLTKNGYIV CCCCCCEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE YINDHRGHGKTAKIIENVGHLAEKEGFRCLVEDMYTLTNIIKKENEDLPIYLFGHSMGSF EEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCH ASQRYIMDYSNNLAGLILCGSNGKQGIILNLAHLIINREIKKYGRRSKSNKINNL HHCCEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA