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The map label for this gene is sigV [H]

Identifier: 126699162

GI number: 126699162

Start: 1806610

End: 1807092

Strand: Direct

Name: sigV [H]

Synonym: CD1558

Alternate gene names: 126699162

Gene position: 1806610-1807092 (Clockwise)

Preceding gene: 126699161

Following gene: 126699163

Centisome position: 42.11

GC content: 25.26

Gene sequence:

>483_bases
ATGTTTAAGAGTTTAAAGAGAACGAAAGTTGAGAAATACATTATCGATAATAAAGACTCTTTTTATAGAATAGCATATAG
TTATACGAAGAATGAAGAAGATGCCTTAGATGTGGTTCAAGAAGCCATGTATAAGGCACTATACTCAGTGGAAAATATTA
AAGAAGTAAATTATATAAAGACATGGTTTTATAAAATTTTAGTTAGAACGAGTATAGATTTTATTAGAAAAAACCGTAAA
TATAATAATATGACAGATATTGACCTTATAGATGAGACTGGAGAGTATGATAAATATACTGATTTGGATTTAAGAAGAGC
TTTGGAAGAATTACCTATTGAATACAAATCTATTATAATATTAAGATTTTTTGAAGATTTAAAGATTGAAGAAGTAGCAA
TAATATTGGATGAAAATGTGAATACTGTTAAAACTAGGTTATATACTGCTTTAAAAAAACTAAAATTAAAAATTGAAGAG
TAG

Upstream 100 bases:

>100_bases
TATTGAGCATATAAAAAAACTGAATGAAGATGCTAAAATAGACAGATAGAATTTCTAACAGCTCAATCCTAGCCTGTAAT
CGGAGGGAGATTTTACAGGA

Downstream 100 bases:

>100_bases
GGATAAAAAGAATGACAAGCAAAGAAAGGTTAAATAAGTTAAAAGATGAGTATCATAAAATTCCAATACCCAAGAAATTA
GATACTATAATAAATCATGA

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 160

Protein sequence:

>160_residues
MFKSLKRTKVEKYIIDNKDSFYRIAYSYTKNEEDALDVVQEAMYKALYSVENIKEVNYIKTWFYKILVRTSIDFIRKNRK
YNNMTDIDLIDETGEYDKYTDLDLRRALEELPIEYKSIIILRFFEDLKIEEVAIILDENVNTVKTRLYTALKKLKLKIEE

Sequences:

>Translated_160_residues
MFKSLKRTKVEKYIIDNKDSFYRIAYSYTKNEEDALDVVQEAMYKALYSVENIKEVNYIKTWFYKILVRTSIDFIRKNRK
YNNMTDIDLIDETGEYDKYTDLDLRRALEELPIEYKSIIILRFFEDLKIEEVAIILDENVNTVKTRLYTALKKLKLKIEE
>Mature_160_residues
MFKSLKRTKVEKYIIDNKDSFYRIAYSYTKNEEDALDVVQEAMYKALYSVENIKEVNYIKTWFYKILVRTSIDFIRKNRK
YNNMTDIDLIDETGEYDKYTDLDLRRALEELPIEYKSIIILRFFEDLKIEEVAIILDENVNTVKTRLYTALKKLKLKIEE

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Positively regulates the expression of proteins involved in stress responses against bacitracin, paraquat and tellurite

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19343; Mature: 19343

Theoretical pI: Translated: 5.49; Mature: 5.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKSLKRTKVEKYIIDNKDSFYRIAYSYTKNEEDALDVVQEAMYKALYSVENIKEVNYIK
CCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TWFYKILVRTSIDFIRKNRKYNNMTDIDLIDETGEYDKYTDLDLRRALEELPIEYKSIII
HHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHCCCHHHHHHH
LRFFEDLKIEEVAIILDENVNTVKTRLYTALKKLKLKIEE
HHHHHHCCHHHEEEEECCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFKSLKRTKVEKYIIDNKDSFYRIAYSYTKNEEDALDVVQEAMYKALYSVENIKEVNYIK
CCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TWFYKILVRTSIDFIRKNRKYNNMTDIDLIDETGEYDKYTDLDLRRALEELPIEYKSIII
HHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHCCCHHHHHHH
LRFFEDLKIEEVAIILDENVNTVKTRLYTALKKLKLKIEE
HHHHHHCCHHHEEEEECCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377 [H]