| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
Click here to switch to the map view.
The map label for this gene is 126699146
Identifier: 126699146
GI number: 126699146
Start: 1790950
End: 1791990
Strand: Direct
Name: 126699146
Synonym: CD1542
Alternate gene names: NA
Gene position: 1790950-1791990 (Clockwise)
Preceding gene: 126699145
Following gene: 126699147
Centisome position: 41.74
GC content: 27.19
Gene sequence:
>1041_bases ATGGAATTTACAAAGAAAAGCAAATTAAAAAATATGTATGTAAACATGAATGTAGCTAGAATGTTGTCTAAGATAAATGA GTATAAGGGTAGACAACTGCTTTACAAAAAACAACCAAAAGAAATTTTAGAAAACTTAGAAAAAAAATCTTTAGTAGATT GTTCTGAATCTACATACATTGGAAATCAAAGAGATAGTAGTAATTTTAATCTAGAAAAGTTGATAAGTAATGAAGTTACA CCTAGAAGTAGAGAGGAATTGAGTATTGTTGAATACAGAGATGTGGTAAAAACTATTAACAGTGCTTATGAGAGTATTCC CATCAGTTCACAAACGATTCTTGAGCTTCATGGATACTTATATAAATTTTCATCTACTAGAGGAGGAAGTTATAAGTCAG ATAATGATTTTATTGAACACAATTTAAAACCTAGCGAATTTATAAGTACTGATTCAAGTGTCAATAAAGTTGAAAAAGCT GTAGAAGAAATATGTGAAGCTTATAATACATTGATAGAGGAAGATGAAATTGATATATTAATATTAATTTCTGCATTTGT GTTAGATTTCATATTGATACATCCATTCAAAGAAGGTAATATAAAAATGGCGAGAGTACTTATCCTATTGTTACTAAATA AAAATGGGTATGAAGTTGGAAGATATATAAGTTTAGGAAAGATATTTGATGATAGTTCATATGAATATTATAGTAATTTA AATTATTTGAAAGCCTCAATAGGTAGTGAAAAAGCAGATATGAATGCATGGATTGAGTATTTTTTAGAGACGATATTAAC TGCATATGAGAAGCTGGATGATAGTTTAAATATATCTGATAAGAAAAGACAAACAAAAACTAGTAGAATAGAGAAAATAA TAAATTCTACCCTTGGATATTTTACAAAAGAAGATATAAGAGATTTATGTCCTGACATTCCAGAACCTACTATAAATAGA GTTTTTAATAATCTAAGAAAACAAGATAAGATAGAAGTTGTTGCAAGAGGAAGAAGTGCAAAATGGAAGAAAAAATATTA A
Upstream 100 bases:
>100_bases AAATTCAGATAATTGAGCAAGAAATTGCAAAAAATACGATTATATGATAAAATAAAACCGCTGTCAAGGATAAGAGAAAT TCTAATTATGGAGTGATTTT
Downstream 100 bases:
>100_bases AAAATGTTTAGATAACTAAAATGGTATAGTGTTTTACACTATACCATTTTTAATGTCATTAGCATGAGCAATAATTTAAC AACTTAAGCAATATCAATTT
Product: hypothetical protein
Products: NA
Alternate protein names: Filamentation Induced By CAMP Protein Fic; Fic Protein Family; Regulation Factor CAMP; AsnC Family Regulatory Protein
Number of amino acids: Translated: 346; Mature: 346
Protein sequence:
>346_residues MEFTKKSKLKNMYVNMNVARMLSKINEYKGRQLLYKKQPKEILENLEKKSLVDCSESTYIGNQRDSSNFNLEKLISNEVT PRSREELSIVEYRDVVKTINSAYESIPISSQTILELHGYLYKFSSTRGGSYKSDNDFIEHNLKPSEFISTDSSVNKVEKA VEEICEAYNTLIEEDEIDILILISAFVLDFILIHPFKEGNIKMARVLILLLLNKNGYEVGRYISLGKIFDDSSYEYYSNL NYLKASIGSEKADMNAWIEYFLETILTAYEKLDDSLNISDKKRQTKTSRIEKIINSTLGYFTKEDIRDLCPDIPEPTINR VFNNLRKQDKIEVVARGRSAKWKKKY
Sequences:
>Translated_346_residues MEFTKKSKLKNMYVNMNVARMLSKINEYKGRQLLYKKQPKEILENLEKKSLVDCSESTYIGNQRDSSNFNLEKLISNEVT PRSREELSIVEYRDVVKTINSAYESIPISSQTILELHGYLYKFSSTRGGSYKSDNDFIEHNLKPSEFISTDSSVNKVEKA VEEICEAYNTLIEEDEIDILILISAFVLDFILIHPFKEGNIKMARVLILLLLNKNGYEVGRYISLGKIFDDSSYEYYSNL NYLKASIGSEKADMNAWIEYFLETILTAYEKLDDSLNISDKKRQTKTSRIEKIINSTLGYFTKEDIRDLCPDIPEPTINR VFNNLRKQDKIEVVARGRSAKWKKKY >Mature_346_residues MEFTKKSKLKNMYVNMNVARMLSKINEYKGRQLLYKKQPKEILENLEKKSLVDCSESTYIGNQRDSSNFNLEKLISNEVT PRSREELSIVEYRDVVKTINSAYESIPISSQTILELHGYLYKFSSTRGGSYKSDNDFIEHNLKPSEFISTDSSVNKVEKA VEEICEAYNTLIEEDEIDILILISAFVLDFILIHPFKEGNIKMARVLILLLLNKNGYEVGRYISLGKIFDDSSYEYYSNL NYLKASIGSEKADMNAWIEYFLETILTAYEKLDDSLNISDKKRQTKTSRIEKIINSTLGYFTKEDIRDLCPDIPEPTINR VFNNLRKQDKIEVVARGRSAKWKKKY
Specific function: Unknown
COG id: COG3177
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40183; Mature: 40183
Theoretical pI: Translated: 7.41; Mature: 7.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEFTKKSKLKNMYVNMNVARMLSKINEYKGRQLLYKKQPKEILENLEKKSLVDCSESTYI CCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHCCCCCCCCC GNQRDSSNFNLEKLISNEVTPRSREELSIVEYRDVVKTINSAYESIPISSQTILELHGYL CCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH YKFSSTRGGSYKSDNDFIEHNLKPSEFISTDSSVNKVEKAVEEICEAYNTLIEEDEIDIL HHCCCCCCCCCCCCCHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHH ILISAFVLDFILIHPFKEGNIKMARVLILLLLNKNGYEVGRYISLGKIFDDSSYEYYSNL HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHEEHHHHCCCCCHHHHHHH NYLKASIGSEKADMNAWIEYFLETILTAYEKLDDSLNISDKKRQTKTSRIEKIINSTLGY HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH FTKEDIRDLCPDIPEPTINRVFNNLRKQDKIEVVARGRSAKWKKKY CCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MEFTKKSKLKNMYVNMNVARMLSKINEYKGRQLLYKKQPKEILENLEKKSLVDCSESTYI CCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHCCCCCCCCC GNQRDSSNFNLEKLISNEVTPRSREELSIVEYRDVVKTINSAYESIPISSQTILELHGYL CCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH YKFSSTRGGSYKSDNDFIEHNLKPSEFISTDSSVNKVEKAVEEICEAYNTLIEEDEIDIL HHCCCCCCCCCCCCCHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHH ILISAFVLDFILIHPFKEGNIKMARVLILLLLNKNGYEVGRYISLGKIFDDSSYEYYSNL HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHEEHHHHCCCCCHHHHHHH NYLKASIGSEKADMNAWIEYFLETILTAYEKLDDSLNISDKKRQTKTSRIEKIINSTLGY HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH FTKEDIRDLCPDIPEPTINRVFNNLRKQDKIEVVARGRSAKWKKKY CCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA