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The map label for this gene is yciR [C]

Identifier: 126699142

GI number: 126699142

Start: 1784341

End: 1786560

Strand: Direct

Name: yciR [C]

Synonym: CD1538

Alternate gene names: 126699142

Gene position: 1784341-1786560 (Clockwise)

Preceding gene: 126699141

Following gene: 126699143

Centisome position: 41.59

GC content: 24.46

Gene sequence:

>2220_bases
ATGAAAAAAAGAGAAAAAGTATTTGATGGGCTAGTTTTTAAGCATATATTAATCTTATTAATACTATTAGTTTTGATTGA
TTTAACAAGTACCATCATATATGCAAGTAACTCTATGGAAATTACTTCTAGAAATATGATTGAGGCATCAAAAAGAGAAC
TTGAAAACTATTTAGAAGTAAACATATCTTTATTAAAAGCTCTTAGTCAAGATGATAGATTTTCTAATGGTGAAACATCA
CTAATTGAAAAGGGAAAATTATTAAGTCCATATCAAAAGGAATATAATCTTTTTATGATTGGTATAACAGATACAAAAGG
AAATGCTTCAAGTACATATAGGGAAAATGTTAACTCAATAAAAGATAAGCCTAGTTTTGAGAAAGCAATTAAAACAAAGC
AAGTAGTAGTTTCAGATATTGAAGTCAGTAATGTAACAGGTGACAAAGTATTTATCATATATGTACCAATTGTAAAAAAT
AATGAGATGATTGGGACCATTTTTGCTTCTTTTTATTTTCAAGATGTAAATAATTTAATAAGTAGAAGCAATTTTGATGA
TTCTATTAAATTTCTAATGATAGATAAAGATTATACTATTATTTCTCATCCAAACAAAAAATATGTAAATGATAAAAGTA
AGATGCTTGATTTAGAAGGGAATATTATAGGAACCACTAAAAGTGAAATCTTAAAAAATATAAATAAAAAATGTCAAGGT
GATTTTTTATCTTGGGATAATTGGAGATTATATAATGTAAAATATACGAACATAAAGTGGACTAATTGGACTTTAGTATC
AAAATGTAATATATTTAAGAACTTTAAAAATCTAATAGTTAATTTTATGATAAAGTTGTATTTTTATATAGTAATATTTA
TGATATTGTGGAAATTAAGTAATGCTAAATTAATAGAACAACTTAAAAAATTGGCTTATTATGATTCTTTAAGTGGAATA
AAAAATAAAGAAAAGTTTAGAAAAGATTCTATGTATATTTTAAAGAATTATTATCAAGATAATTTTTACTTAGTACAATT
GGATGTCAATAAATTTAAATATATAAATGAGATGTTTGGATATGCTGAAGGGAATAAGATATTAATTCATATATCACAAG
TTTTAAATAATAATACAAATAAATATGAAATTTGTGCTAGGATGGATAATGACCATTTTATATTGTTGATTGCTTGTAAC
ACTGAAGATGAACTTTTAAATAGATTATCTAAAATAAATAAAGAAATTTGTAACTTAAATACTACTAACTCATCTAAGTA
TAAAATTGTTATGTCAAGTGGAATATATAAGATTACTAAAAAGGATGATATTAAAAAGATTGACTTGTTAATTGATAGAG
CAAATATTGCAGCAAAAAGTAAAAAGGAAAAATATGAACATTCATATTCATTTTTTAATGAAGATACAAGAAATCGATTG
TACAAGGAAAAACGATTGGAAGATAATATGAATAAAGCTTTAGAAAAAGGTGAATTTATAGTATATTATCAACCTAAGTA
TAGTTTAGATGATGTAAATGAAATTGAAGGAGCAGAAGCCTTGATAAGATGGAATAGTCCAGAATTTGGGTTTATTTCAC
CTATAGATTTTGTACCTTTATTTGAAAAGAATGGTTTTATTGTAAATATTGATATGTTCGTGTTTGAAGAAGTATGCAAA
ACATTAAACAAGTGGATAAATAAAGGGTATACTCCTGTACCAATCTCTGTAAATATGTCTAGAGTTCATTTATATAGGGA
TAATTTTATAGAAAATATAACTGATTTGATAAGTAAATACAATATATCTCCTGAGTTTATTGAACTTGAACTAACAGAAA
GTGTTGTGTTTGATAATTTAAATATATTGATTGATATAATGAAAAAGATTAAAGAGATAGGATTCCTTATATCAATGGAT
GATTTTGGTTCGGGATATTCATCTTTAAATCTGTTAAAAGACCTTTCTTTTGATATTTTAAAATTAGATAGAGGATTTTT
AATCGAAACAACAGATACAAAACGTGGAAAAATTATTATTTCTAAGATTGTGGAAATGGCAAAAGCGATTGATATTAAAG
TAATCTGTGAGGGCGTAGAAACTTATGAACAAGTAGAGTTCTTGAAAGAGATAGGTTGTGATAAGGTTCAAGGATACTTA
TTTGCTAAACCTATGGTATTAGATGAATTTGAAAAGCACTTAAACTTTAAATTTGATTAA

Upstream 100 bases:

>100_bases
TCTTGTAAGGAGTGAATAATGTGTGGCTAATAAAATCAGATTTGTCAAATCTAACATTAAATAATAGAAAAATAAATTGT
GTAATTAATGGTATTTTAAT

Downstream 100 bases:

>100_bases
TCATTAATAATTATTAGACTATAAGATACCCTAACAACTTACTTACAAATATGTAAGTTAATTGTTAGGGTATTTTTATG
GTTAAAGTAGTATATTCACG

Product: signaling protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 739; Mature: 739

Protein sequence:

>739_residues
MKKREKVFDGLVFKHILILLILLVLIDLTSTIIYASNSMEITSRNMIEASKRELENYLEVNISLLKALSQDDRFSNGETS
LIEKGKLLSPYQKEYNLFMIGITDTKGNASSTYRENVNSIKDKPSFEKAIKTKQVVVSDIEVSNVTGDKVFIIYVPIVKN
NEMIGTIFASFYFQDVNNLISRSNFDDSIKFLMIDKDYTIISHPNKKYVNDKSKMLDLEGNIIGTTKSEILKNINKKCQG
DFLSWDNWRLYNVKYTNIKWTNWTLVSKCNIFKNFKNLIVNFMIKLYFYIVIFMILWKLSNAKLIEQLKKLAYYDSLSGI
KNKEKFRKDSMYILKNYYQDNFYLVQLDVNKFKYINEMFGYAEGNKILIHISQVLNNNTNKYEICARMDNDHFILLIACN
TEDELLNRLSKINKEICNLNTTNSSKYKIVMSSGIYKITKKDDIKKIDLLIDRANIAAKSKKEKYEHSYSFFNEDTRNRL
YKEKRLEDNMNKALEKGEFIVYYQPKYSLDDVNEIEGAEALIRWNSPEFGFISPIDFVPLFEKNGFIVNIDMFVFEEVCK
TLNKWINKGYTPVPISVNMSRVHLYRDNFIENITDLISKYNISPEFIELELTESVVFDNLNILIDIMKKIKEIGFLISMD
DFGSGYSSLNLLKDLSFDILKLDRGFLIETTDTKRGKIIISKIVEMAKAIDIKVICEGVETYEQVEFLKEIGCDKVQGYL
FAKPMVLDEFEKHLNFKFD

Sequences:

>Translated_739_residues
MKKREKVFDGLVFKHILILLILLVLIDLTSTIIYASNSMEITSRNMIEASKRELENYLEVNISLLKALSQDDRFSNGETS
LIEKGKLLSPYQKEYNLFMIGITDTKGNASSTYRENVNSIKDKPSFEKAIKTKQVVVSDIEVSNVTGDKVFIIYVPIVKN
NEMIGTIFASFYFQDVNNLISRSNFDDSIKFLMIDKDYTIISHPNKKYVNDKSKMLDLEGNIIGTTKSEILKNINKKCQG
DFLSWDNWRLYNVKYTNIKWTNWTLVSKCNIFKNFKNLIVNFMIKLYFYIVIFMILWKLSNAKLIEQLKKLAYYDSLSGI
KNKEKFRKDSMYILKNYYQDNFYLVQLDVNKFKYINEMFGYAEGNKILIHISQVLNNNTNKYEICARMDNDHFILLIACN
TEDELLNRLSKINKEICNLNTTNSSKYKIVMSSGIYKITKKDDIKKIDLLIDRANIAAKSKKEKYEHSYSFFNEDTRNRL
YKEKRLEDNMNKALEKGEFIVYYQPKYSLDDVNEIEGAEALIRWNSPEFGFISPIDFVPLFEKNGFIVNIDMFVFEEVCK
TLNKWINKGYTPVPISVNMSRVHLYRDNFIENITDLISKYNISPEFIELELTESVVFDNLNILIDIMKKIKEIGFLISMD
DFGSGYSSLNLLKDLSFDILKLDRGFLIETTDTKRGKIIISKIVEMAKAIDIKVICEGVETYEQVEFLKEIGCDKVQGYL
FAKPMVLDEFEKHLNFKFD
>Mature_739_residues
MKKREKVFDGLVFKHILILLILLVLIDLTSTIIYASNSMEITSRNMIEASKRELENYLEVNISLLKALSQDDRFSNGETS
LIEKGKLLSPYQKEYNLFMIGITDTKGNASSTYRENVNSIKDKPSFEKAIKTKQVVVSDIEVSNVTGDKVFIIYVPIVKN
NEMIGTIFASFYFQDVNNLISRSNFDDSIKFLMIDKDYTIISHPNKKYVNDKSKMLDLEGNIIGTTKSEILKNINKKCQG
DFLSWDNWRLYNVKYTNIKWTNWTLVSKCNIFKNFKNLIVNFMIKLYFYIVIFMILWKLSNAKLIEQLKKLAYYDSLSGI
KNKEKFRKDSMYILKNYYQDNFYLVQLDVNKFKYINEMFGYAEGNKILIHISQVLNNNTNKYEICARMDNDHFILLIACN
TEDELLNRLSKINKEICNLNTTNSSKYKIVMSSGIYKITKKDDIKKIDLLIDRANIAAKSKKEKYEHSYSFFNEDTRNRL
YKEKRLEDNMNKALEKGEFIVYYQPKYSLDDVNEIEGAEALIRWNSPEFGFISPIDFVPLFEKNGFIVNIDMFVFEEVCK
TLNKWINKGYTPVPISVNMSRVHLYRDNFIENITDLISKYNISPEFIELELTESVVFDNLNILIDIMKKIKEIGFLISMD
DFGSGYSSLNLLKDLSFDILKLDRGFLIETTDTKRGKIIISKIVEMAKAIDIKVICEGVETYEQVEFLKEIGCDKVQGYL
FAKPMVLDEFEKHLNFKFD

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=434, Percent_Identity=28.8018433179723, Blast_Score=206, Evalue=3e-54,
Organism=Escherichia coli, GI87081921, Length=441, Percent_Identity=24.9433106575964, Blast_Score=169, Evalue=5e-43,
Organism=Escherichia coli, GI226510982, Length=288, Percent_Identity=31.25, Blast_Score=159, Evalue=8e-40,
Organism=Escherichia coli, GI1790496, Length=241, Percent_Identity=34.8547717842324, Blast_Score=152, Evalue=9e-38,
Organism=Escherichia coli, GI87081743, Length=257, Percent_Identity=34.2412451361868, Blast_Score=151, Evalue=1e-37,
Organism=Escherichia coli, GI87081845, Length=247, Percent_Identity=31.1740890688259, Blast_Score=137, Evalue=3e-33,
Organism=Escherichia coli, GI87081980, Length=248, Percent_Identity=29.8387096774194, Blast_Score=119, Evalue=7e-28,
Organism=Escherichia coli, GI1788502, Length=245, Percent_Identity=29.7959183673469, Blast_Score=118, Evalue=2e-27,
Organism=Escherichia coli, GI87082096, Length=248, Percent_Identity=30.241935483871, Blast_Score=116, Evalue=4e-27,
Organism=Escherichia coli, GI1787055, Length=384, Percent_Identity=26.0416666666667, Blast_Score=112, Evalue=1e-25,
Organism=Escherichia coli, GI1788849, Length=263, Percent_Identity=28.8973384030418, Blast_Score=109, Evalue=7e-25,
Organism=Escherichia coli, GI1786507, Length=239, Percent_Identity=28.4518828451883, Blast_Score=102, Evalue=6e-23,
Organism=Escherichia coli, GI1787410, Length=120, Percent_Identity=30.8333333333333, Blast_Score=66, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 86315; Mature: 86315

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKREKVFDGLVFKHILILLILLVLIDLTSTIIYASNSMEITSRNMIEASKRELENYLEV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEECHHHHHHHHHHHHHHHHHH
NISLLKALSQDDRFSNGETSLIEKGKLLSPYQKEYNLFMIGITDTKGNASSTYRENVNSI
HHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHH
KDKPSFEKAIKTKQVVVSDIEVSNVTGDKVFIIYVPIVKNNEMIGTIFASFYFQDVNNLI
CCCCCHHHHHHHHHHEEEEEEEECCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHH
SRSNFDDSIKFLMIDKDYTIISHPNKKYVNDKSKMLDLEGNIIGTTKSEILKNINKKCQG
HCCCCCCCEEEEEEECCEEEEECCCCHHCCCCHHEEEECCCEEECCHHHHHHHHHHHHCC
DFLSWDNWRLYNVKYTNIKWTNWTLVSKCNIFKNFKNLIVNFMIKLYFYIVIFMILWKLS
CCCCCCCEEEEEEEEEEEEEECEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NAKLIEQLKKLAYYDSLSGIKNKEKFRKDSMYILKNYYQDNFYLVQLDVNKFKYINEMFG
CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHC
YAEGNKILIHISQVLNNNTNKYEICARMDNDHFILLIACNTEDELLNRLSKINKEICNLN
CCCCCEEEEEEEHHHCCCCCEEEEEEEECCCCEEEEEEECCHHHHHHHHHHHHHHHHCCC
TTNSSKYKIVMSSGIYKITKKDDIKKIDLLIDRANIAAKSKKEKYEHSYSFFNEDTRNRL
CCCCCEEEEEEECCEEEECCCCCCEEEHHEEECCHHHHHHHHHHHHHHHHHCCHHHHHHH
YKEKRLEDNMNKALEKGEFIVYYQPKYSLDDVNEIEGAEALIRWNSPEFGFISPIDFVPL
HHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHCCCCEEEEEECCCCCCCCCCCCCEEE
FEKNGFIVNIDMFVFEEVCKTLNKWINKGYTPVPISVNMSRVHLYRDNFIENITDLISKY
ECCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEECHHEEEEEHHHHHHHHHHHHHHC
NISPEFIELELTESVVFDNLNILIDIMKKIKEIGFLISMDDFGSGYSSLNLLKDLSFDIL
CCCCCEEEEEEEHHHHHCCHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHCCHHEE
KLDRGFLIETTDTKRGKIIISKIVEMAKAIDIKVICEGVETYEQVEFLKEIGCDKVQGYL
EECCCEEEEECCCCCCCCHHHHHHHHHHHCCHHEEECCHHHHHHHHHHHHCCCCHHCCEE
FAKPMVLDEFEKHLNFKFD
EECCHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKKREKVFDGLVFKHILILLILLVLIDLTSTIIYASNSMEITSRNMIEASKRELENYLEV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEECHHHHHHHHHHHHHHHHHH
NISLLKALSQDDRFSNGETSLIEKGKLLSPYQKEYNLFMIGITDTKGNASSTYRENVNSI
HHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHH
KDKPSFEKAIKTKQVVVSDIEVSNVTGDKVFIIYVPIVKNNEMIGTIFASFYFQDVNNLI
CCCCCHHHHHHHHHHEEEEEEEECCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHH
SRSNFDDSIKFLMIDKDYTIISHPNKKYVNDKSKMLDLEGNIIGTTKSEILKNINKKCQG
HCCCCCCCEEEEEEECCEEEEECCCCHHCCCCHHEEEECCCEEECCHHHHHHHHHHHHCC
DFLSWDNWRLYNVKYTNIKWTNWTLVSKCNIFKNFKNLIVNFMIKLYFYIVIFMILWKLS
CCCCCCCEEEEEEEEEEEEEECEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NAKLIEQLKKLAYYDSLSGIKNKEKFRKDSMYILKNYYQDNFYLVQLDVNKFKYINEMFG
CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHC
YAEGNKILIHISQVLNNNTNKYEICARMDNDHFILLIACNTEDELLNRLSKINKEICNLN
CCCCCEEEEEEEHHHCCCCCEEEEEEEECCCCEEEEEEECCHHHHHHHHHHHHHHHHCCC
TTNSSKYKIVMSSGIYKITKKDDIKKIDLLIDRANIAAKSKKEKYEHSYSFFNEDTRNRL
CCCCCEEEEEEECCEEEECCCCCCEEEHHEEECCHHHHHHHHHHHHHHHHHCCHHHHHHH
YKEKRLEDNMNKALEKGEFIVYYQPKYSLDDVNEIEGAEALIRWNSPEFGFISPIDFVPL
HHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHCCCCEEEEEECCCCCCCCCCCCCEEE
FEKNGFIVNIDMFVFEEVCKTLNKWINKGYTPVPISVNMSRVHLYRDNFIENITDLISKY
ECCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEECHHEEEEEHHHHHHHHHHHHHHC
NISPEFIELELTESVVFDNLNILIDIMKKIKEIGFLISMDDFGSGYSSLNLLKDLSFDIL
CCCCCEEEEEEEHHHHHCCHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHCCHHEE
KLDRGFLIETTDTKRGKIIISKIVEMAKAIDIKVICEGVETYEQVEFLKEIGCDKVQGYL
EECCCEEEEECCCCCCCCHHHHHHHHHHHCCHHEEECCHHHHHHHHHHHHCCCCHHCCEE
FAKPMVLDEFEKHLNFKFD
EECCHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]