| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is metI [H]
Identifier: 126699094
GI number: 126699094
Start: 1725309
End: 1725965
Strand: Direct
Name: metI [H]
Synonym: CD1490
Alternate gene names: 126699094
Gene position: 1725309-1725965 (Clockwise)
Preceding gene: 126699093
Following gene: 126699095
Centisome position: 40.21
GC content: 30.44
Gene sequence:
>657_bases ATGAATAGTTTAATTGACTTTTTAACAACACTATTTCCAAATGCATTGTTACAAACTTTGTATATGGTTATAGTACCAAC TATAGTGGCAACAATATTAGGATTTATATTAGCAATCATATTAGTAGTTACAAAACCAGATGGATTAAAACCAAATAGCA CAATAAATAGTGCATTAGGATTTATAGTAAATATATTTAGAAGTTTCCCATTTATGATACTTATAGTTGCAATGATTCCA ATAACTAGATTAATCGTTGGAACAAGTATAGGGGAAACTGCTGCAATAGTGCCAATAACTATTGGGGCAGCACCGTTTAT CGCTAGAATTATAGAAAGCTCATTAAATGAAGTTGATAAAGGATTGATAGAAGCAGCAAAATCTTTTGGAGCTACAAAAA GACAAATAGTATTTAAAGTTATGATAAAGGAAGCTATGCCTTCAATAGTATCTGGAATTACATTATCAATAATATCTATA CTTGGTTATACAGCTATGGCAGGTGCAGTAGGAGCTGGAGGATTAGGTAATATAGCACTTATTTATGGATATCAAAGATT TGATACAGCAGTAATGGTATATACTGTAATAGCACTTATAATATTAGTTCAGATAATCCAGGGAGTAGGAAATCTGGCTT ATAAGAAACTAAAATAA
Upstream 100 bases:
>100_bases GATATTTTAGGTTCACTTATTATAAACATTTCAGATAAAAGTGGAGAGCAAGTAAAACAATATCTAACTAGTAAAGGCAT AAGATGGGAGGAAATGATAA
Downstream 100 bases:
>100_bases ATTAATTATAAACATTTTAAAGAGGGGGAGTAAAAATGAAATTAAAGAAATTATTATCAGTAGCATTGGTGTCAGCAATA GCAATATCAGCAGTAGGTTG
Product: D-methionine ABC transporter permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 218; Mature: 218
Protein sequence:
>218_residues MNSLIDFLTTLFPNALLQTLYMVIVPTIVATILGFILAIILVVTKPDGLKPNSTINSALGFIVNIFRSFPFMILIVAMIP ITRLIVGTSIGETAAIVPITIGAAPFIARIIESSLNEVDKGLIEAAKSFGATKRQIVFKVMIKEAMPSIVSGITLSIISI LGYTAMAGAVGAGGLGNIALIYGYQRFDTAVMVYTVIALIILVQIIQGVGNLAYKKLK
Sequences:
>Translated_218_residues MNSLIDFLTTLFPNALLQTLYMVIVPTIVATILGFILAIILVVTKPDGLKPNSTINSALGFIVNIFRSFPFMILIVAMIP ITRLIVGTSIGETAAIVPITIGAAPFIARIIESSLNEVDKGLIEAAKSFGATKRQIVFKVMIKEAMPSIVSGITLSIISI LGYTAMAGAVGAGGLGNIALIYGYQRFDTAVMVYTVIALIILVQIIQGVGNLAYKKLK >Mature_218_residues MNSLIDFLTTLFPNALLQTLYMVIVPTIVATILGFILAIILVVTKPDGLKPNSTINSALGFIVNIFRSFPFMILIVAMIP ITRLIVGTSIGETAAIVPITIGAAPFIARIIESSLNEVDKGLIEAAKSFGATKRQIVFKVMIKEAMPSIVSGITLSIISI LGYTAMAGAVGAGGLGNIALIYGYQRFDTAVMVYTVIALIILVQIIQGVGNLAYKKLK
Specific function: Part of the binding-protein-dependent transport system for D-methionine. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG2011
COG function: function code P; ABC-type metal ion transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1786397, Length=179, Percent_Identity=49.7206703910614, Blast_Score=147, Evalue=8e-37, Organism=Escherichia coli, GI1789033, Length=145, Percent_Identity=35.1724137931034, Blast_Score=69, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 23189; Mature: 23189
Theoretical pI: Translated: 10.15; Mature: 10.15
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSLIDFLTTLFPNALLQTLYMVIVPTIVATILGFILAIILVVTKPDGLKPNSTINSALG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH FIVNIFRSFPFMILIVAMIPITRLIVGTSIGETAAIVPITIGAAPFIARIIESSLNEVDK HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEECCHHHHHHHHHHHHHHHHHH GLIEAAKSFGATKRQIVFKVMIKEAMPSIVSGITLSIISILGYTAMAGAVGAGGLGNIAL HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH IYGYQRFDTAVMVYTVIALIILVQIIQGVGNLAYKKLK HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MNSLIDFLTTLFPNALLQTLYMVIVPTIVATILGFILAIILVVTKPDGLKPNSTINSALG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH FIVNIFRSFPFMILIVAMIPITRLIVGTSIGETAAIVPITIGAAPFIARIIESSLNEVDK HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEECCHHHHHHHHHHHHHHHHHH GLIEAAKSFGATKRQIVFKVMIKEAMPSIVSGITLSIISILGYTAMAGAVGAGGLGNIAL HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH IYGYQRFDTAVMVYTVIALIILVQIIQGVGNLAYKKLK HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]