| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is nuoI [C]
Identifier: 126699072
GI number: 126699072
Start: 1697852
End: 1699126
Strand: Direct
Name: nuoI [C]
Synonym: CD1468
Alternate gene names: 126699072
Gene position: 1697852-1699126 (Clockwise)
Preceding gene: 126699071
Following gene: 126699074
Centisome position: 39.57
GC content: 31.69
Gene sequence:
>1275_bases GTGATTACTATTTCTCATATAACTGCGAAGAATATGTATAAAAGTTTAGAGGAAAGAATAAACAAGTTTCCACAAGGTGC TCCACCATCTGATACATTATACAAAATACTAAATGTACTATATACAGAACAAGAGGCGAAGTTAGTTGCTCAGCTTCCAA TAAAGCCTTTCAGAGTAAAAACAGCAGCTAAAATTTGGAGTGTAAGTGAAAGTGAAGCATATAGAGTATTGGATAAACTT GCTAGTAAGGCTCTGATACTAGATATAGAAGATAATAAAGGGAAGAAATATATAATGCCTCCTCCAATGGCTGGTTTTTT TGAGTTTGCCATGATGAGAACGAGACACGATATAGACCAAAAACTTTTGGCAGAGCTTTACTATCAATATATGAATGTAG AAGAAGATTTTATCAAAGATTTATTTTATTCAACAGAAACGAAGCTTGGAAGAGTATACGTTCAAGAGGAAGTTTTAACT AATGATAATGAGGTTAGTATTTTAGATTATGAAAGGGCTACTCATATAATTGATGAATCAACTCATATAGGTATAAGTAT GTGTTACTGTAGACATAGAATGCAACATGTTGGAAAAGCTTGTGATGCTCCTATGGATATATGTATGACGTTTGACAATG TAGCAAATTCTTTAATAAATAATAAATTTGCAAGACGTGTGGATAAAATAGAATGTAAAGAACTACTTCATCAAGCATAT GAACATAACTTAGTTCAATGTGGAGAAAATGTTAGGAAAGGGGTTACGTTTATATGTAATTGCTGTGGATGTTGCTGTGA AGCAATGGTAGCAGCTAAAAGATTTGGAAATCTTCATCCAGTACAGACAACAAGTTTTATACCAAATATAAACCATGAAA ATTGTGTAAAGTGTGGTAAATGTATAACTGCATGTCCAATAGATGCGATAAGCAAGGTTAAGGAAGATGGTAAAGAATAT ATAAAAATTGATGAGGATAGATGTTTAGGTTGTGGAGTTTGTGTTAGAAATTGCCATAAAAATAGCATTATGTTATTAAA GAGAGATGAAAAAATAATAACTCCAGCAAATTCAGTACATAGAGCAGTTCTTATGGCAATTGAAAAAGGGCAGTTACAAA ATTTAATTTTTGATAATAATGCTCTGGCTAGTCATAGAGCTATGGGAGCTATACTGTCAGCTATATTAAAGCTTGAACCA GCTAAAAAGATTTTAGCCAGTAAACAATTAAAGTCAGTATATTTAGATAAATTGTTAAGTATGAATGATAAATAG
Upstream 100 bases:
>100_bases AGGTATTTAACTATTTAGAAAGAATTGGTATTATATAAAGTAAGAGAATATATAATAAGAAAGAATATTTGATTTTATTG GAAAACAAAAGAAAAAGAAG
Downstream 100 bases:
>100_bases AAACTAACTTAAAAAAGGCAAAGTTTTAGACTTATCTATATCTTAATAAACTTATCATTTAATATTTAAATTTAATTTTT ACACATATAAAACTTATAAC
Product: iron-sulfur protein
Products: NAD+; ubiquinol [C]
Alternate protein names: Pyridine Nucleotide-Disulphide Oxidoreductase; Ferredoxin; Glutamate Synthase; 4Fe-4S Ferredoxin; FAD-Dependent Pyridine Nucleotide-Disulfide Oxidoreductase
Number of amino acids: Translated: 424; Mature: 424
Protein sequence:
>424_residues MITISHITAKNMYKSLEERINKFPQGAPPSDTLYKILNVLYTEQEAKLVAQLPIKPFRVKTAAKIWSVSESEAYRVLDKL ASKALILDIEDNKGKKYIMPPPMAGFFEFAMMRTRHDIDQKLLAELYYQYMNVEEDFIKDLFYSTETKLGRVYVQEEVLT NDNEVSILDYERATHIIDESTHIGISMCYCRHRMQHVGKACDAPMDICMTFDNVANSLINNKFARRVDKIECKELLHQAY EHNLVQCGENVRKGVTFICNCCGCCCEAMVAAKRFGNLHPVQTTSFIPNINHENCVKCGKCITACPIDAISKVKEDGKEY IKIDEDRCLGCGVCVRNCHKNSIMLLKRDEKIITPANSVHRAVLMAIEKGQLQNLIFDNNALASHRAMGAILSAILKLEP AKKILASKQLKSVYLDKLLSMNDK
Sequences:
>Translated_424_residues MITISHITAKNMYKSLEERINKFPQGAPPSDTLYKILNVLYTEQEAKLVAQLPIKPFRVKTAAKIWSVSESEAYRVLDKL ASKALILDIEDNKGKKYIMPPPMAGFFEFAMMRTRHDIDQKLLAELYYQYMNVEEDFIKDLFYSTETKLGRVYVQEEVLT NDNEVSILDYERATHIIDESTHIGISMCYCRHRMQHVGKACDAPMDICMTFDNVANSLINNKFARRVDKIECKELLHQAY EHNLVQCGENVRKGVTFICNCCGCCCEAMVAAKRFGNLHPVQTTSFIPNINHENCVKCGKCITACPIDAISKVKEDGKEY IKIDEDRCLGCGVCVRNCHKNSIMLLKRDEKIITPANSVHRAVLMAIEKGQLQNLIFDNNALASHRAMGAILSAILKLEP AKKILASKQLKSVYLDKLLSMNDK >Mature_424_residues MITISHITAKNMYKSLEERINKFPQGAPPSDTLYKILNVLYTEQEAKLVAQLPIKPFRVKTAAKIWSVSESEAYRVLDKL ASKALILDIEDNKGKKYIMPPPMAGFFEFAMMRTRHDIDQKLLAELYYQYMNVEEDFIKDLFYSTETKLGRVYVQEEVLT NDNEVSILDYERATHIIDESTHIGISMCYCRHRMQHVGKACDAPMDICMTFDNVANSLINNKFARRVDKIECKELLHQAY EHNLVQCGENVRKGVTFICNCCGCCCEAMVAAKRFGNLHPVQTTSFIPNINHENCVKCGKCITACPIDAISKVKEDGKEY IKIDEDRCLGCGVCVRNCHKNSIMLLKRDEKIITPANSVHRAVLMAIEKGQLQNLIFDNNALASHRAMGAILSAILKLEP AKKILASKQLKSVYLDKLLSMNDK
Specific function: Ndh-1 Shuttles Electrons From NADH, Via Fmn And Iron- Sulfur (Fe-S) Centers, To Quinones In The Respiratory Chain. The Immediate Electron Acceptor For The Enzyme In This Species Is Believed To Be Ubiquinone. Couples The Redox Reaction To Proton Translocat
COG id: COG1145
COG function: function code C; Ferredoxin
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: 60 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 1.6.99.5 [C]
Molecular weight: Translated: 48135; Mature: 48135
Theoretical pI: Translated: 8.02; Mature: 8.02
Prosite motif: PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.7 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 8.5 %Cys+Met (Translated Protein) 4.7 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 8.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MITISHITAKNMYKSLEERINKFPQGAPPSDTLYKILNVLYTEQEAKLVAQLPIKPFRVK CEEEEHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH TAAKIWSVSESEAYRVLDKLASKALILDIEDNKGKKYIMPPPMAGFFEFAMMRTRHDIDQ HHHHHHCCCHHHHHHHHHHHCCCEEEEEEECCCCCEEECCCCCHHHHHHHHHHHHHHHHH KLLAELYYQYMNVEEDFIKDLFYSTETKLGRVYVQEEVLTNDNEVSILDYERATHIIDES HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEEHHHHHCCCCCEEEEEHHHHHHHHCCC THIGISMCYCRHRMQHVGKACDAPMDICMTFDNVANSLINNKFARRVDKIECKELLHQAY CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EHNLVQCGENVRKGVTFICNCCGCCCEAMVAAKRFGNLHPVQTTSFIPNINHENCVKCGK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHCC CITACPIDAISKVKEDGKEYIKIDEDRCLGCGVCVRNCHKNSIMLLKRDEKIITPANSVH HHHHCCHHHHHHHHHCCHHHEEECCCCCCCHHHHHHHCCCCCEEEEECCCCEECCCHHHH RAVLMAIEKGQLQNLIFDNNALASHRAMGAILSAILKLEPAKKILASKQLKSVYLDKLLS HHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHC MNDK CCCC >Mature Secondary Structure MITISHITAKNMYKSLEERINKFPQGAPPSDTLYKILNVLYTEQEAKLVAQLPIKPFRVK CEEEEHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH TAAKIWSVSESEAYRVLDKLASKALILDIEDNKGKKYIMPPPMAGFFEFAMMRTRHDIDQ HHHHHHCCCHHHHHHHHHHHCCCEEEEEEECCCCCEEECCCCCHHHHHHHHHHHHHHHHH KLLAELYYQYMNVEEDFIKDLFYSTETKLGRVYVQEEVLTNDNEVSILDYERATHIIDES HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEEHHHHHCCCCCEEEEEHHHHHHHHCCC THIGISMCYCRHRMQHVGKACDAPMDICMTFDNVANSLINNKFARRVDKIECKELLHQAY CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EHNLVQCGENVRKGVTFICNCCGCCCEAMVAAKRFGNLHPVQTTSFIPNINHENCVKCGK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHCC CITACPIDAISKVKEDGKEYIKIDEDRCLGCGVCVRNCHKNSIMLLKRDEKIITPANSVH HHHHCCHHHHHHHHHCCHHHEEECCCCCCCHHHHHHHCCCCCEEEEECCCCEECCCHHHH RAVLMAIEKGQLQNLIFDNNALASHRAMGAILSAILKLEPAKKILASKQLKSVYLDKLLS HHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHC MNDK CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: Iron [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NADH; ubiquinone [C]
Specific reaction: NADH + ubiquinone = NAD+ + ubiquinol [C]
General reaction: Redox reaction [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA