| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is ycsG [H]
Identifier: 126698988
GI number: 126698988
Start: 1603762
End: 1604982
Strand: Direct
Name: ycsG [H]
Synonym: CD1385
Alternate gene names: 126698988
Gene position: 1603762-1604982 (Clockwise)
Preceding gene: 126698987
Following gene: 126698989
Centisome position: 37.38
GC content: 31.37
Gene sequence:
>1221_bases ATGAGTACAAAAAATATTACAGATAAAACTAAAAATAAAAAAGATGTCGGAGCACTTATAGGGGCTGCATTTATAATGGC AACATCAGCAATTGGACCAGGGTTTTTAACTCAGACTGCACAATTTACCCAAGATTTTGGACCGAATTTTTCATTTGTAA TTTTAATTACAACAATCCTTTTTATAGGGGCTCAAGTAAATGTATGGAGAGTAATTGGTGTATCAGGACTTAGAGGTCAG GATATAGCAAATAAAATAATACCTGGATTAGGCTATTTAGTAGCTTTTTTAGTAGCTCTTGGAGGATTAGCTTTTAATAT AGGAAATGTTGGTGGAGCTGCACTTGGTATGAATGTAATGTTTAATATGAATATGACATTAGGAACTGTATTAAGTGGAT TAATAGCTATATTTGTATTTATGTCAAAAAATTCAAATTCTCTAGTCGATAAGATAACTAAATTTTTAGCATTAGGAATG ATAATTATAGTTGGATATGTAGCAATATCAAATCATCCTCCTGTTGGAGAGGCAGTATCAAGAATGGTAAAACCAGAAAA TCCAAAAGGACTGATATTCCCAATAATAACTTTACTTGGAGGAAGTGTTGGAGGTTATATAACTTTTGCTGGAGGACATA GATTAATAGACGGTGGAATAACAGGAGAAGAAAATATAAAAGAAATAACTAAATCTTCTCTTTTGGGTATATTAGTTGCC ACAATGATGAGAGTTCTTTTATTTTTAGCAATACTGGCAGTGGTTTCAAAAGGTCTTCAACTTGACCCAGAAAATCCAGC TGCTTCAGCTTTTAAATTTAGTGCAGGAGCAATAGGATATAAATTCTTTGGACTTGTATTATGGTCTGCTGCAATTACAT CAGTTATAGGAGCTGCTTATACATCAGTTTCTTTCTTAAAGACACTAAATCCTTTTATAGATAAATATGAAAAATATTTT ATAATAGCATTTATAGCAATATCAACACTTATAATGGCATTTATAGGAAAACCAGCTACTTTATTAATTTTAGCAGGAGC TTTAAATGGATTGATACTTCCAATCACATTAGGAATTATGCTTATAGCATCTAAAAGAAAAGATATTGTTGGAGATTACA AGCATCCTACATGGCTTTTAATATTTGGATTAATAGTAGTTTTAATATCTGCATATACAGGAATAACTTCTCTTAGCAGC CTAGGTGCTTTATTTGCTTAA
Upstream 100 bases:
>100_bases TTTGAATTAGAAAGTATAGAAGTTTGTCCATTAGAAAACATAGAAGTTTGTTCGTCAGAGAACATAGTATAAGACTGATA ACATGAGGGGGAGATAAAAT
Downstream 100 bases:
>100_bases TTTAGAAGAGGTGACATTTATGGAAACTAGATACTTGATATCAGGGGATAAGGCAGTGGTTGCTGAATTTGGAAATGAGA TATCAGAAGATATAAACAAA
Product: transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 406; Mature: 405
Protein sequence:
>406_residues MSTKNITDKTKNKKDVGALIGAAFIMATSAIGPGFLTQTAQFTQDFGPNFSFVILITTILFIGAQVNVWRVIGVSGLRGQ DIANKIIPGLGYLVAFLVALGGLAFNIGNVGGAALGMNVMFNMNMTLGTVLSGLIAIFVFMSKNSNSLVDKITKFLALGM IIIVGYVAISNHPPVGEAVSRMVKPENPKGLIFPIITLLGGSVGGYITFAGGHRLIDGGITGEENIKEITKSSLLGILVA TMMRVLLFLAILAVVSKGLQLDPENPAASAFKFSAGAIGYKFFGLVLWSAAITSVIGAAYTSVSFLKTLNPFIDKYEKYF IIAFIAISTLIMAFIGKPATLLILAGALNGLILPITLGIMLIASKRKDIVGDYKHPTWLLIFGLIVVLISAYTGITSLSS LGALFA
Sequences:
>Translated_406_residues MSTKNITDKTKNKKDVGALIGAAFIMATSAIGPGFLTQTAQFTQDFGPNFSFVILITTILFIGAQVNVWRVIGVSGLRGQ DIANKIIPGLGYLVAFLVALGGLAFNIGNVGGAALGMNVMFNMNMTLGTVLSGLIAIFVFMSKNSNSLVDKITKFLALGM IIIVGYVAISNHPPVGEAVSRMVKPENPKGLIFPIITLLGGSVGGYITFAGGHRLIDGGITGEENIKEITKSSLLGILVA TMMRVLLFLAILAVVSKGLQLDPENPAASAFKFSAGAIGYKFFGLVLWSAAITSVIGAAYTSVSFLKTLNPFIDKYEKYF IIAFIAISTLIMAFIGKPATLLILAGALNGLILPITLGIMLIASKRKDIVGDYKHPTWLLIFGLIVVLISAYTGITSLSS LGALFA >Mature_405_residues STKNITDKTKNKKDVGALIGAAFIMATSAIGPGFLTQTAQFTQDFGPNFSFVILITTILFIGAQVNVWRVIGVSGLRGQD IANKIIPGLGYLVAFLVALGGLAFNIGNVGGAALGMNVMFNMNMTLGTVLSGLIAIFVFMSKNSNSLVDKITKFLALGMI IIVGYVAISNHPPVGEAVSRMVKPENPKGLIFPIITLLGGSVGGYITFAGGHRLIDGGITGEENIKEITKSSLLGILVAT MMRVLLFLAILAVVSKGLQLDPENPAASAFKFSAGAIGYKFFGLVLWSAAITSVIGAAYTSVSFLKTLNPFIDKYEKYFI IAFIAISTLIMAFIGKPATLLILAGALNGLILPITLGIMLIASKRKDIVGDYKHPTWLLIFGLIVVLISAYTGITSLSSL GALFA
Specific function: Unknown
COG id: COG1914
COG function: function code P; Mn2+ and Fe2+ transporters of the NRAMP family
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the NRAMP family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001046 [H]
Pfam domain/function: PF01566 Nramp [H]
EC number: NA
Molecular weight: Translated: 42810; Mature: 42679
Theoretical pI: Translated: 10.30; Mature: 10.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTKNITDKTKNKKDVGALIGAAFIMATSAIGPGFLTQTAQFTQDFGPNFSFVILITTIL CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHH FIGAQVNVWRVIGVSGLRGQDIANKIIPGLGYLVAFLVALGGLAFNIGNVGGAALGMNVM HHCCCCEEEEEEECCCCCCHHHHHHHCCHHHHHHHHHHHHCCHHEECCCCCCHHHCCEEE FNMNMTLGTVLSGLIAIFVFMSKNSNSLVDKITKFLALGMIIIVGYVAISNHPPVGEAVS EECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH RMVKPENPKGLIFPIITLLGGSVGGYITFAGGHRLIDGGITGEENIKEITKSSLLGILVA HHCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCEEEECCCCCHHHHHHHHHHHHHHHHHH TMMRVLLFLAILAVVSKGLQLDPENPAASAFKFSAGAIGYKFFGLVLWSAAITSVIGAAY HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH TSVSFLKTLNPFIDKYEKYFIIAFIAISTLIMAFIGKPATLLILAGALNGLILPITLGIM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHH LIASKRKDIVGDYKHPTWLLIFGLIVVLISAYTGITSLSSLGALFA HHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure STKNITDKTKNKKDVGALIGAAFIMATSAIGPGFLTQTAQFTQDFGPNFSFVILITTIL CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHH FIGAQVNVWRVIGVSGLRGQDIANKIIPGLGYLVAFLVALGGLAFNIGNVGGAALGMNVM HHCCCCEEEEEEECCCCCCHHHHHHHCCHHHHHHHHHHHHCCHHEECCCCCCHHHCCEEE FNMNMTLGTVLSGLIAIFVFMSKNSNSLVDKITKFLALGMIIIVGYVAISNHPPVGEAVS EECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH RMVKPENPKGLIFPIITLLGGSVGGYITFAGGHRLIDGGITGEENIKEITKSSLLGILVA HHCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCEEEECCCCCHHHHHHHHHHHHHHHHHH TMMRVLLFLAILAVVSKGLQLDPENPAASAFKFSAGAIGYKFFGLVLWSAAITSVIGAAY HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH TSVSFLKTLNPFIDKYEKYFIIAFIAISTLIMAFIGKPATLLILAGALNGLILPITLGIM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHH LIASKRKDIVGDYKHPTWLLIFGLIVVLISAYTGITSLSSLGALFA HHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377; 8969502 [H]