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The map label for this gene is xerD2 [H]

Identifier: 126698932

GI number: 126698932

Start: 1546822

End: 1547730

Strand: Direct

Name: xerD2 [H]

Synonym: CD1333

Alternate gene names: 126698932

Gene position: 1546822-1547730 (Clockwise)

Preceding gene: 126698929

Following gene: 126698933

Centisome position: 36.05

GC content: 26.4

Gene sequence:

>909_bases
ATGTATAGTACAAAAATACTAGATGATTATGAGTATGAAACTTTTAATGTTTTTTCTACAAAATTAAATCCAAACACGAA
ACACGATTATTTATCAAAGGTTATACTGTTTAAAGAATTTTTAAAAGGGAAAGAATTGATTTATGCTACGAAAGAAGATT
GTAAAAATTTTGTAGACTATATACAGACTAAATATGCGAAATCAACTTGTGAAAAGATATATAGTTATTTACATAGTTTT
TATAACTTCTTAAAAAAAGAAGGATACATAGATATAAATCCATTTAGATATGTAGAAAAACCCACAGTAACAAGAATAAA
AACAAAAGATGATGTTCTAAGTATACAAGAAATAAATAAACTTATAGGTATCCTACCAAAATTAAATATAAGAGATAGAG
TAATAATAGTCTGTCTAGTTACTACTGGGTGTTTATTAAATGAATTAGTTAGCTTAAAGTGGAAAGACCTTATGGTAGAT
GAAAACGATAACTCATATGTAAGGTTAGGTAAGGGAAGAAAAGAAAGAGTAGTTAAATTACATCCATACTTTTTTAAACT
TTTAGAAGATTACAGGAATTATTCTGGGCTTCCAGAGGTAATAATACCTAGTGATGATTTTATTTTTACAACTCAAAAGA
GTAATTCTATAACAGATAGAAATGTCAGACTTATAGTCAAAAAAGCATTAGATTTAGCTGGACTTTCTCAATATTCAGCA
AGAGATTTTAGACATTCATTTGCAGCAATAAGTTTAAGGCTTGGGGCAGATGAAAGTGATGTAAAAAATCAGCTTGGATG
GAGTGATAAATACTATGCAATTAGATATAAGTATGTATTAAATTTTGTTGATAGTGAAATAGTGGATTACTTAATTGAAA
AAGATAATTTGGATATAAATAAAAAATAG

Upstream 100 bases:

>100_bases
CTTAAAAGTTATCTATTGAATAAGGGGTATATTTGAGGGGGAAATATATGGTATAGTAAAAGTATAGCTATTTTATTTTA
TGAAAAGGAAAGGAGTTATT

Downstream 100 bases:

>100_bases
TAATAAATAGAAAATACTATATATAAATGTGAACAAAAAATAAAAAAGTCTTGTTATAGTTCGTAAAATTATATATAATT
ATTTATGTACTAATGTGTAC

Product: tyrosine recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MYSTKILDDYEYETFNVFSTKLNPNTKHDYLSKVILFKEFLKGKELIYATKEDCKNFVDYIQTKYAKSTCEKIYSYLHSF
YNFLKKEGYIDINPFRYVEKPTVTRIKTKDDVLSIQEINKLIGILPKLNIRDRVIIVCLVTTGCLLNELVSLKWKDLMVD
ENDNSYVRLGKGRKERVVKLHPYFFKLLEDYRNYSGLPEVIIPSDDFIFTTQKSNSITDRNVRLIVKKALDLAGLSQYSA
RDFRHSFAAISLRLGADESDVKNQLGWSDKYYAIRYKYVLNFVDSEIVDYLIEKDNLDINKK

Sequences:

>Translated_302_residues
MYSTKILDDYEYETFNVFSTKLNPNTKHDYLSKVILFKEFLKGKELIYATKEDCKNFVDYIQTKYAKSTCEKIYSYLHSF
YNFLKKEGYIDINPFRYVEKPTVTRIKTKDDVLSIQEINKLIGILPKLNIRDRVIIVCLVTTGCLLNELVSLKWKDLMVD
ENDNSYVRLGKGRKERVVKLHPYFFKLLEDYRNYSGLPEVIIPSDDFIFTTQKSNSITDRNVRLIVKKALDLAGLSQYSA
RDFRHSFAAISLRLGADESDVKNQLGWSDKYYAIRYKYVLNFVDSEIVDYLIEKDNLDINKK
>Mature_302_residues
MYSTKILDDYEYETFNVFSTKLNPNTKHDYLSKVILFKEFLKGKELIYATKEDCKNFVDYIQTKYAKSTCEKIYSYLHSF
YNFLKKEGYIDINPFRYVEKPTVTRIKTKDDVLSIQEINKLIGILPKLNIRDRVIIVCLVTTGCLLNELVSLKWKDLMVD
ENDNSYVRLGKGRKERVVKLHPYFFKLLEDYRNYSGLPEVIIPSDDFIFTTQKSNSITDRNVRLIVKKALDLAGLSQYSA
RDFRHSFAAISLRLGADESDVKNQLGWSDKYYAIRYKYVLNFVDSEIVDYLIEKDNLDINKK

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=258, Percent_Identity=27.5193798449612, Blast_Score=75, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 35516; Mature: 35516

Theoretical pI: Translated: 9.02; Mature: 9.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYSTKILDDYEYETFNVFSTKLNPNTKHDYLSKVILFKEFLKGKELIYATKEDCKNFVDY
CCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHH
IQTKYAKSTCEKIYSYLHSFYNFLKKEGYIDINPFRYVEKPTVTRIKTKDDVLSIQEINK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCEECCCCCEEEECHHHHHHHHHHHH
LIGILPKLNIRDRVIIVCLVTTGCLLNELVSLKWKDLMVDENDNSYVRLGKGRKERVVKL
HHHHCCCCCCCCCEEEEEEHHHHHHHHHHHHCCHHHEEEECCCCCEEEECCCCCCCEEEE
HPYFFKLLEDYRNYSGLPEVIIPSDDFIFTTQKSNSITDRNVRLIVKKALDLAGLSQYSA
CHHHHHHHHHHHCCCCCCCEEECCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHHH
RDFRHSFAAISLRLGADESDVKNQLGWSDKYYAIRYKYVLNFVDSEIVDYLIEKDNLDIN
HHHHHHHHEEEEEECCCHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCC
KK
CC
>Mature Secondary Structure
MYSTKILDDYEYETFNVFSTKLNPNTKHDYLSKVILFKEFLKGKELIYATKEDCKNFVDY
CCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHH
IQTKYAKSTCEKIYSYLHSFYNFLKKEGYIDINPFRYVEKPTVTRIKTKDDVLSIQEINK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCEECCCCCEEEECHHHHHHHHHHHH
LIGILPKLNIRDRVIIVCLVTTGCLLNELVSLKWKDLMVDENDNSYVRLGKGRKERVVKL
HHHHCCCCCCCCCEEEEEEHHHHHHHHHHHHCCHHHEEEECCCCCEEEECCCCCCCEEEE
HPYFFKLLEDYRNYSGLPEVIIPSDDFIFTTQKSNSITDRNVRLIVKKALDLAGLSQYSA
CHHHHHHHHHHHCCCCCCCEEECCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHHH
RDFRHSFAAISLRLGADESDVKNQLGWSDKYYAIRYKYVLNFVDSEIVDYLIEKDNLDIN
HHHHHHHHEEEEEECCCHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCC
KK
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12235376 [H]