| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is ymxG [H]
Identifier: 126698919
GI number: 126698919
Start: 1530563
End: 1531810
Strand: Direct
Name: ymxG [H]
Synonym: CD1320
Alternate gene names: 126698919
Gene position: 1530563-1531810 (Clockwise)
Preceding gene: 126698918
Following gene: 126698920
Centisome position: 35.68
GC content: 28.12
Gene sequence:
>1248_bases ATGTATAAGACAAAAATACTGGAAAATGGGCTTACAATAATTGGTGAAGAAATACCATATCTAAAGTCAATAACATTAGG TATTTGGATAAATGCAGGCTCTAGGATAGAAGAAGCACAGGTGAGTGGAACTTCTCATTTTATAGAGCATATGATGTTTA AAGGAACCAAAAACAGAACATCAAAAGAGATTGCTAGTTCAATAGATAATTTGGGTGGTCAAATAAATGCATTTACAAGT AAAGAATGTACATGTTATTATGTAAAACTAATAGATGAGCATATAGATACAGGAATTGATGTATTGAGTGATATGATACT AAATTCTAAATTTGATAAAAATGATATAGATAAGGAAAGACTTATAATATTGGAAGAACTTAAGATGTATGAAGACTCTC CAGATGACTTATCTTATGATTTATTAGTGGAAAATATATATGCTAATGATGGATTAGGAATGAATATAATTGGGACAAAA GAATCTCTGTACAATATAACTAGAGAATCCATGTTAGAATACTTAAATAAGTATTATATTCCAAATAACGCTGTTATTTC TATAGCTGGAAACTTTAACTTTGATGATATGGTGGAGAAAATCAAATCAAAATTTGGACACTGGGAAAAGAAAAATTTAA GTATAGACATAAGTGAGGCTAAGTTTAATCCTTGCTTTATATCAAAAAATAAAGATACTGAACAGGTGAACTTAGCTATG TGCCTAAAAGGTATTCCTTTTGAAAATGATGAAGAAGTCTATTCAATGGCAGTGGTAAATAATATTTTCGGTGGAAGTAT AAGCTCAAGGCTTTTTCAGAAAATAAGGGAAGAAAAAGGTTTAGTATATTCAATATACTCATCACAGACATTATATAGGA AATGTGGTGAATTAGGTATATTTGCAAGCATGAGTACAGAAAATTTACAAGATGTATATAATTTAATAAAGAAAGAAATT GAAAATATAAGAGAAAACTATCTTACAGAAAAAGAAATATCTGAAAGCAAGGAACAGTTAAAAGGAAATTATATATTGGA TTTAGAAAGTACTAGCAGTAGAATGATGTCTACTGGTAAATCTATGTTACTTAGCAAAAAAGTAAAAACTACAGATGAAA TACTTGAATGTATAAATAATGTTAATATTAATTCAATAAAGAAGGTTGTTGATAAGGTATTCAATATCGAAAATATTGGT ACATGTATAGTTGGAAGAGATGTAGAAAAGATTCTACACTTGGATTAA
Upstream 100 bases:
>100_bases CTGACTTATAATGTAATACATATAAAAAATAAATATAATTAAAACATAGTGTTTTCAATAATCCAATATGAAACAAAGAA TAAATTGTTAGGAGAATGTA
Downstream 100 bases:
>100_bases TATTGAAAAAAGTAAATCTCTGGAGGTATAAAATATGAATTTATCTGAAATAGCAGGTAAGGAAATAGTTAACTTGGTCA CAGGAGAAAGATTGGGGGTC
Product: peptidase
Products: NA
Alternate protein names: ORFP [H]
Number of amino acids: Translated: 415; Mature: 415
Protein sequence:
>415_residues MYKTKILENGLTIIGEEIPYLKSITLGIWINAGSRIEEAQVSGTSHFIEHMMFKGTKNRTSKEIASSIDNLGGQINAFTS KECTCYYVKLIDEHIDTGIDVLSDMILNSKFDKNDIDKERLIILEELKMYEDSPDDLSYDLLVENIYANDGLGMNIIGTK ESLYNITRESMLEYLNKYYIPNNAVISIAGNFNFDDMVEKIKSKFGHWEKKNLSIDISEAKFNPCFISKNKDTEQVNLAM CLKGIPFENDEEVYSMAVVNNIFGGSISSRLFQKIREEKGLVYSIYSSQTLYRKCGELGIFASMSTENLQDVYNLIKKEI ENIRENYLTEKEISESKEQLKGNYILDLESTSSRMMSTGKSMLLSKKVKTTDEILECINNVNINSIKKVVDKVFNIENIG TCIVGRDVEKILHLD
Sequences:
>Translated_415_residues MYKTKILENGLTIIGEEIPYLKSITLGIWINAGSRIEEAQVSGTSHFIEHMMFKGTKNRTSKEIASSIDNLGGQINAFTS KECTCYYVKLIDEHIDTGIDVLSDMILNSKFDKNDIDKERLIILEELKMYEDSPDDLSYDLLVENIYANDGLGMNIIGTK ESLYNITRESMLEYLNKYYIPNNAVISIAGNFNFDDMVEKIKSKFGHWEKKNLSIDISEAKFNPCFISKNKDTEQVNLAM CLKGIPFENDEEVYSMAVVNNIFGGSISSRLFQKIREEKGLVYSIYSSQTLYRKCGELGIFASMSTENLQDVYNLIKKEI ENIRENYLTEKEISESKEQLKGNYILDLESTSSRMMSTGKSMLLSKKVKTTDEILECINNVNINSIKKVVDKVFNIENIG TCIVGRDVEKILHLD >Mature_415_residues MYKTKILENGLTIIGEEIPYLKSITLGIWINAGSRIEEAQVSGTSHFIEHMMFKGTKNRTSKEIASSIDNLGGQINAFTS KECTCYYVKLIDEHIDTGIDVLSDMILNSKFDKNDIDKERLIILEELKMYEDSPDDLSYDLLVENIYANDGLGMNIIGTK ESLYNITRESMLEYLNKYYIPNNAVISIAGNFNFDDMVEKIKSKFGHWEKKNLSIDISEAKFNPCFISKNKDTEQVNLAM CLKGIPFENDEEVYSMAVVNNIFGGSISSRLFQKIREEKGLVYSIYSSQTLYRKCGELGIFASMSTENLQDVYNLIKKEI ENIRENYLTEKEISESKEQLKGNYILDLESTSSRMMSTGKSMLLSKKVKTTDEILECINNVNINSIKKVVDKVFNIENIG TCIVGRDVEKILHLD
Specific function: Unknown
COG id: COG0612
COG function: function code R; Predicted Zn-dependent peptidases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M16 family [H]
Homologues:
Organism=Homo sapiens, GI94538354, Length=406, Percent_Identity=28.5714285714286, Blast_Score=186, Evalue=3e-47, Organism=Homo sapiens, GI46593007, Length=403, Percent_Identity=23.3250620347395, Blast_Score=138, Evalue=1e-32, Organism=Homo sapiens, GI24308013, Length=428, Percent_Identity=25.4672897196262, Blast_Score=120, Evalue=3e-27, Organism=Homo sapiens, GI155969707, Length=235, Percent_Identity=25.1063829787234, Blast_Score=71, Evalue=2e-12, Organism=Homo sapiens, GI50592988, Length=401, Percent_Identity=18.7032418952618, Blast_Score=69, Evalue=9e-12, Organism=Escherichia coli, GI1787770, Length=207, Percent_Identity=26.0869565217391, Blast_Score=79, Evalue=5e-16, Organism=Caenorhabditis elegans, GI71999683, Length=411, Percent_Identity=26.2773722627737, Blast_Score=186, Evalue=3e-47, Organism=Caenorhabditis elegans, GI17553678, Length=418, Percent_Identity=23.9234449760766, Blast_Score=152, Evalue=2e-37, Organism=Caenorhabditis elegans, GI17510601, Length=427, Percent_Identity=19.672131147541, Blast_Score=67, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6323192, Length=400, Percent_Identity=29.5, Blast_Score=191, Evalue=2e-49, Organism=Saccharomyces cerevisiae, GI6321813, Length=422, Percent_Identity=22.9857819905213, Blast_Score=125, Evalue=1e-29, Organism=Drosophila melanogaster, GI21357875, Length=396, Percent_Identity=27.2727272727273, Blast_Score=177, Evalue=1e-44, Organism=Drosophila melanogaster, GI24646943, Length=396, Percent_Identity=27.2727272727273, Blast_Score=177, Evalue=1e-44, Organism=Drosophila melanogaster, GI19921772, Length=431, Percent_Identity=23.4338747099768, Blast_Score=105, Evalue=7e-23, Organism=Drosophila melanogaster, GI24665395, Length=401, Percent_Identity=20.6982543640898, Blast_Score=74, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011249 - InterPro: IPR011237 - InterPro: IPR011765 - InterPro: IPR001431 - InterPro: IPR007863 [H]
Pfam domain/function: PF00675 Peptidase_M16; PF05193 Peptidase_M16_C [H]
EC number: 3.4.99.- [C]
Molecular weight: Translated: 47280; Mature: 47280
Theoretical pI: Translated: 4.76; Mature: 4.76
Prosite motif: PS00143 INSULINASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYKTKILENGLTIIGEEIPYLKSITLGIWINAGSRIEEAQVSGTSHFIEHMMFKGTKNRT CCCCHHHHCCCEEECCCCCHHHEEEEEEEECCCCCCHHHHHCCHHHHHHHHHHCCCCCCH SKEIASSIDNLGGQINAFTSKECTCYYVKLIDEHIDTGIDVLSDMILNSKFDKNDIDKER HHHHHHHHHHCCCCEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH LIILEELKMYEDSPDDLSYDLLVENIYANDGLGMNIIGTKESLYNITRESMLEYLNKYYI HHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHCC PNNAVISIAGNFNFDDMVEKIKSKFGHWEKKNLSIDISEAKFNPCFISKNKDTEQVNLAM CCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEECCCCCHHHHHHH CLKGIPFENDEEVYSMAVVNNIFGGSISSRLFQKIREEKGLVYSIYSSQTLYRKCGELGI HHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCE FASMSTENLQDVYNLIKKEIENIRENYLTEKEISESKEQLKGNYILDLESTSSRMMSTGK EEECCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH SMLLSKKVKTTDEILECINNVNINSIKKVVDKVFNIENIGTCIVGRDVEKILHLD HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEECCCHHHHHCCC >Mature Secondary Structure MYKTKILENGLTIIGEEIPYLKSITLGIWINAGSRIEEAQVSGTSHFIEHMMFKGTKNRT CCCCHHHHCCCEEECCCCCHHHEEEEEEEECCCCCCHHHHHCCHHHHHHHHHHCCCCCCH SKEIASSIDNLGGQINAFTSKECTCYYVKLIDEHIDTGIDVLSDMILNSKFDKNDIDKER HHHHHHHHHHCCCCEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH LIILEELKMYEDSPDDLSYDLLVENIYANDGLGMNIIGTKESLYNITRESMLEYLNKYYI HHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHCC PNNAVISIAGNFNFDDMVEKIKSKFGHWEKKNLSIDISEAKFNPCFISKNKDTEQVNLAM CCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEECCCCCHHHHHHH CLKGIPFENDEEVYSMAVVNNIFGGSISSRLFQKIREEKGLVYSIYSSQTLYRKCGELGI HHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCE FASMSTENLQDVYNLIKKEIENIRENYLTEKEISESKEQLKGNYILDLESTSSRMMSTGK EEECCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH SMLLSKKVKTTDEILECINNVNINSIKKVVDKVFNIENIGTCIVGRDVEKILHLD HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEECCCHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: Zn [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Endopeptidases of unknown catalytic mechanism [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377; 8098035 [H]