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The map label for this gene is nifU [H]

Identifier: 126698877

GI number: 126698877

Start: 1486524

End: 1486964

Strand: Direct

Name: nifU [H]

Synonym: CD1280

Alternate gene names: 126698877

Gene position: 1486524-1486964 (Clockwise)

Preceding gene: 126698876

Following gene: 126698878

Centisome position: 34.65

GC content: 32.88

Gene sequence:

>441_bases
ATGCAATATAGTGATAAAGTTATGGAACATTTTATGAATCCAAGAAATATGGGAGAAATTGATAATGCAAGTGGTGTAGG
TGAAGTTGGAAACCCTACATGTGGAGATATAATGAAGATATTTTTAGACATAGATGGAGATGTAATAAAGGATGTTAAGT
TTAAAACATTTGGCTGTGGTTCAGCTATAGCAAGTTCTTCTATGGCAACTGAAATGATAAAAGGAAAAACTATAAAAGAT
GCATTAGAACTTACAAATAAAGCTGTTGCAGAAGCTTTGGATGGTTTACCACCAGTAAAGATGCATTGTTCAGTTTTAGC
TGAACAAGCTGTAAAAGCAGCTCTTATAGATTATGCTCAAAAGAACAATATCCATATACCAGAATTGGATGGATATGTTA
TAGATGATGCTCATGACCATGATGTTGAAGAAGAAGAATAA

Upstream 100 bases:

>100_bases
TGTCACCACTTTATGATGATGCGAAGAAACAAGGTTTAGTAAAATAGACATAAAGATAAAGCATAAAAAATAGACATAAA
TTGAGTAGGAGGAAAAGATA

Downstream 100 bases:

>100_bases
AAATAAGTGATTGTGTTATGAGAAGTTTACAATGATTAAAAAGAAGTACTAATGATATAATTAGGACATAAAAAATAGCT
GTTTTTAAAATAGCTATTTT

Product: NifU-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 146

Protein sequence:

>146_residues
MQYSDKVMEHFMNPRNMGEIDNASGVGEVGNPTCGDIMKIFLDIDGDVIKDVKFKTFGCGSAIASSSMATEMIKGKTIKD
ALELTNKAVAEALDGLPPVKMHCSVLAEQAVKAALIDYAQKNNIHIPELDGYVIDDAHDHDVEEEE

Sequences:

>Translated_146_residues
MQYSDKVMEHFMNPRNMGEIDNASGVGEVGNPTCGDIMKIFLDIDGDVIKDVKFKTFGCGSAIASSSMATEMIKGKTIKD
ALELTNKAVAEALDGLPPVKMHCSVLAEQAVKAALIDYAQKNNIHIPELDGYVIDDAHDHDVEEEE
>Mature_146_residues
MQYSDKVMEHFMNPRNMGEIDNASGVGEVGNPTCGDIMKIFLDIDGDVIKDVKFKTFGCGSAIASSSMATEMIKGKTIKD
ALELTNKAVAEALDGLPPVKMHCSVLAEQAVKAALIDYAQKNNIHIPELDGYVIDDAHDHDVEEEE

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Homo sapiens, GI56699456, Length=125, Percent_Identity=55.2, Blast_Score=139, Evalue=1e-33,
Organism=Homo sapiens, GI24307953, Length=124, Percent_Identity=54.8387096774194, Blast_Score=136, Evalue=8e-33,
Organism=Escherichia coli, GI1788878, Length=126, Percent_Identity=53.1746031746032, Blast_Score=138, Evalue=1e-34,
Organism=Caenorhabditis elegans, GI17543474, Length=127, Percent_Identity=53.5433070866142, Blast_Score=132, Evalue=8e-32,
Organism=Saccharomyces cerevisiae, GI6325122, Length=126, Percent_Identity=52.3809523809524, Blast_Score=133, Evalue=1e-32,
Organism=Saccharomyces cerevisiae, GI6324800, Length=126, Percent_Identity=49.2063492063492, Blast_Score=130, Evalue=1e-31,
Organism=Drosophila melanogaster, GI21355597, Length=126, Percent_Identity=54.7619047619048, Blast_Score=135, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011339
- InterPro:   IPR002871 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 15871; Mature: 15871

Theoretical pI: Translated: 4.30; Mature: 4.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
7.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYSDKVMEHFMNPRNMGEIDNASGVGEVGNPTCGDIMKIFLDIDGDVIKDVKFKTFGCG
CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCC
SAIASSSMATEMIKGKTIKDALELTNKAVAEALDGLPPVKMHCSVLAEQAVKAALIDYAQ
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
KNNIHIPELDGYVIDDAHDHDVEEEE
CCCCCCCCCCCEEECCCCCCCCCCCC
>Mature Secondary Structure
MQYSDKVMEHFMNPRNMGEIDNASGVGEVGNPTCGDIMKIFLDIDGDVIKDVKFKTFGCG
CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCC
SAIASSSMATEMIKGKTIKDALELTNKAVAEALDGLPPVKMHCSVLAEQAVKAALIDYAQ
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
KNNIHIPELDGYVIDDAHDHDVEEEE
CCCCCCCCCCCEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]