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The map label for this gene is yrvN [H]

Identifier: 126698873

GI number: 126698873

Start: 1482608

End: 1483903

Strand: Direct

Name: yrvN [H]

Synonym: CD1276

Alternate gene names: 126698873

Gene position: 1482608-1483903 (Clockwise)

Preceding gene: 126698872

Following gene: 126698874

Centisome position: 34.56

GC content: 28.55

Gene sequence:

>1296_bases
ATGATAAGTATATTAAAAAGGAGTGAGAAAATGCCTTTAGCAGATAAAATAAGACCAAAAACAATGAATGATGTAATAGG
TCAAAGTCATATAATAGGTAATGGAAAAATATTGTCTAAGATATTACAATCTAATTTTTTACCAAATATGATATTTTTTG
GTCCTCCTGGTGTTGGTAAAACTACAGTAGCGGAAATAATAGCAGAAAGAAGCAATAAAAGCTTCTATAAAATAAATGCT
ACTAATTCATCTTTAGAAGATATAAAAAAGGTGATATCAGAGCTTGGAAGTATAAATAATGTAAATGGAGTCCTATTATA
TATAGATGAAATACAAAGTTTTAATAAAAAACAGCAACAATCAATATTAGAATTTATGGAAAATGGGAGTATAACTTTGA
TTGCTAGCACTACAGAAAATCCATATCATTATGTATATAAAGCTCTTTTAAGTAGGTCTACTGTATTTGAATTTAAACCT
TTAGAAAAACTTGATGTAGAAAAAGGACTGAAAAGAGCTGTTGAAGTATTAAATGAAGATAGCTATATGGATATTGAGTG
TAATAATGATGCTATTGAAGATATAGCAATTCTTTCTGATGGAGATATGAGAAGAGCCTTAAATATTTTGGAAGTGGTAG
TCTATTCAACTAAACCAAATAAGGATAATATAACTTATATAGATTCAGATGTAATAAGGGCATCTACATTTAATAAAATT
ATAAACTATGACAAAAATGGTGATAGTCATTATGATATTTTAAGTGCATTTCAAAAATCTATAAGAGGAAGTGACCCACA
GGCATCTATACACTATCTAGCAAGACTTATAAAAGGTGGGGATTTGATAAGTATATGTAGGAGACTTTTAGTAATAGCTA
GTGAAGATATAGGTTTAGCTTATCCAAATGCTATTGTAATTGTAAAGGCATGTGTAGACTCAGCTATGCAACTTGGATTT
CCAGAAGCGAAAATACCATTAGCAGAAGCTACTATTCTTTTGGCTACATCTCCAAAGTCTAATTCTGCATGTATAGCAAT
AATGAAAGCTATGGATGAACTGGATAAAGAGTTTGTTAAGGATATACCAAATAGTATAAAGGATGCTCACTATTCTGGTT
CTAAAGAAATAGGTAGGGGTTGTGGATACAAATATCCTCATAATTTTAAAAATCATTATGTAAAGCAACAGTATTTACCA
GATAGCATAAAAGATAGTATTTATTACATACCACAAGAAAATAAAACTGAGAAAAATATAAAAAAATATTTAGAATATCT
AAATAGTGATTTTTAG

Upstream 100 bases:

>100_bases
AAAAAATTAAAAAACAATCAATAATCTATATTTTATAGGTTTAGATTAGAAAAGGTATCTATTTGAAATAGATACCTTTT
TTAGACGAATTATTAAGGTA

Downstream 100 bases:

>100_bases
ACTGAACTTTATGTATCGGGGGTAGATATTATGATTATAAAACTTAACTCAACTTATCACAGTAGAGTTATGAAATACTT
AAAAAAAGAACCTGAGTACA

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 431; Mature: 431

Protein sequence:

>431_residues
MISILKRSEKMPLADKIRPKTMNDVIGQSHIIGNGKILSKILQSNFLPNMIFFGPPGVGKTTVAEIIAERSNKSFYKINA
TNSSLEDIKKVISELGSINNVNGVLLYIDEIQSFNKKQQQSILEFMENGSITLIASTTENPYHYVYKALLSRSTVFEFKP
LEKLDVEKGLKRAVEVLNEDSYMDIECNNDAIEDIAILSDGDMRRALNILEVVVYSTKPNKDNITYIDSDVIRASTFNKI
INYDKNGDSHYDILSAFQKSIRGSDPQASIHYLARLIKGGDLISICRRLLVIASEDIGLAYPNAIVIVKACVDSAMQLGF
PEAKIPLAEATILLATSPKSNSACIAIMKAMDELDKEFVKDIPNSIKDAHYSGSKEIGRGCGYKYPHNFKNHYVKQQYLP
DSIKDSIYYIPQENKTEKNIKKYLEYLNSDF

Sequences:

>Translated_431_residues
MISILKRSEKMPLADKIRPKTMNDVIGQSHIIGNGKILSKILQSNFLPNMIFFGPPGVGKTTVAEIIAERSNKSFYKINA
TNSSLEDIKKVISELGSINNVNGVLLYIDEIQSFNKKQQQSILEFMENGSITLIASTTENPYHYVYKALLSRSTVFEFKP
LEKLDVEKGLKRAVEVLNEDSYMDIECNNDAIEDIAILSDGDMRRALNILEVVVYSTKPNKDNITYIDSDVIRASTFNKI
INYDKNGDSHYDILSAFQKSIRGSDPQASIHYLARLIKGGDLISICRRLLVIASEDIGLAYPNAIVIVKACVDSAMQLGF
PEAKIPLAEATILLATSPKSNSACIAIMKAMDELDKEFVKDIPNSIKDAHYSGSKEIGRGCGYKYPHNFKNHYVKQQYLP
DSIKDSIYYIPQENKTEKNIKKYLEYLNSDF
>Mature_431_residues
MISILKRSEKMPLADKIRPKTMNDVIGQSHIIGNGKILSKILQSNFLPNMIFFGPPGVGKTTVAEIIAERSNKSFYKINA
TNSSLEDIKKVISELGSINNVNGVLLYIDEIQSFNKKQQQSILEFMENGSITLIASTTENPYHYVYKALLSRSTVFEFKP
LEKLDVEKGLKRAVEVLNEDSYMDIECNNDAIEDIAILSDGDMRRALNILEVVVYSTKPNKDNITYIDSDVIRASTFNKI
INYDKNGDSHYDILSAFQKSIRGSDPQASIHYLARLIKGGDLISICRRLLVIASEDIGLAYPNAIVIVKACVDSAMQLGF
PEAKIPLAEATILLATSPKSNSACIAIMKAMDELDKEFVKDIPNSIKDAHYSGSKEIGRGCGYKYPHNFKNHYVKQQYLP
DSIKDSIYYIPQENKTEKNIKKYLEYLNSDF

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=441, Percent_Identity=35.827664399093, Blast_Score=236, Evalue=2e-62,
Organism=Homo sapiens, GI18426904, Length=441, Percent_Identity=33.1065759637188, Blast_Score=200, Evalue=2e-51,
Organism=Homo sapiens, GI6677723, Length=215, Percent_Identity=30.2325581395349, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI194306571, Length=213, Percent_Identity=30.0469483568075, Blast_Score=79, Evalue=6e-15,
Organism=Homo sapiens, GI194306567, Length=213, Percent_Identity=30.0469483568075, Blast_Score=79, Evalue=6e-15,
Organism=Escherichia coli, GI1787119, Length=420, Percent_Identity=35.2380952380952, Blast_Score=268, Evalue=7e-73,
Organism=Caenorhabditis elegans, GI71986063, Length=236, Percent_Identity=25, Blast_Score=71, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17541988, Length=234, Percent_Identity=24.7863247863248, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17554730, Length=234, Percent_Identity=26.0683760683761, Blast_Score=65, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6324111, Length=437, Percent_Identity=35.0114416475973, Blast_Score=235, Evalue=9e-63,
Organism=Saccharomyces cerevisiae, GI6324039, Length=297, Percent_Identity=28.6195286195286, Blast_Score=89, Evalue=9e-19,
Organism=Saccharomyces cerevisiae, GI6324478, Length=228, Percent_Identity=27.1929824561404, Blast_Score=72, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6322528, Length=222, Percent_Identity=25.2252252252252, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI19921076, Length=226, Percent_Identity=24.7787610619469, Blast_Score=73, Evalue=4e-13,
Organism=Drosophila melanogaster, GI18859927, Length=224, Percent_Identity=24.5535714285714, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI17647857, Length=289, Percent_Identity=25.6055363321799, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR008824
- InterPro:   IPR021886 [H]

Pfam domain/function: PF12002 MgsA_C; PF05496 RuvB_N [H]

EC number: NA

Molecular weight: Translated: 48384; Mature: 48384

Theoretical pI: Translated: 7.16; Mature: 7.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISILKRSEKMPLADKIRPKTMNDVIGQSHIIGNGKILSKILQSNFLPNMIFFGPPGVGK
CCCCCCCCCCCCCHHHCCCCHHHHHCCCCEEECCHHHHHHHHHHCCCCCEEEECCCCCCH
TTVAEIIAERSNKSFYKINATNSSLEDIKKVISELGSINNVNGVLLYIDEIQSFNKKQQQ
HHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHCHHHHH
SILEFMENGSITLIASTTENPYHYVYKALLSRSTVFEFKPLEKLDVEKGLKRAVEVLNED
HHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHCCC
SYMDIECNNDAIEDIAILSDGDMRRALNILEVVVYSTKPNKDNITYIDSDVIRASTFNKI
CEEEEECCCCCHHHEEEECCCHHHHHHHHHHHHHCCCCCCCCCCEEECCHHHHHHHHHHH
INYDKNGDSHYDILSAFQKSIRGSDPQASIHYLARLIKGGDLISICRRLLVIASEDIGLA
HCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCC
YPNAIVIVKACVDSAMQLGFPEAKIPLAEATILLATSPKSNSACIAIMKAMDELDKEFVK
CCCHHHHHHHHHHHHHHCCCCCCCCCHHHEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
DIPNSIKDAHYSGSKEIGRGCGYKYPHNFKNHYVKQQYLPDSIKDSIYYIPQENKTEKNI
HHHHHHHHCCCCCCHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCEEECCCCCCCHHHH
KKYLEYLNSDF
HHHHHHHCCCC
>Mature Secondary Structure
MISILKRSEKMPLADKIRPKTMNDVIGQSHIIGNGKILSKILQSNFLPNMIFFGPPGVGK
CCCCCCCCCCCCCHHHCCCCHHHHHCCCCEEECCHHHHHHHHHHCCCCCEEEECCCCCCH
TTVAEIIAERSNKSFYKINATNSSLEDIKKVISELGSINNVNGVLLYIDEIQSFNKKQQQ
HHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHCHHHHH
SILEFMENGSITLIASTTENPYHYVYKALLSRSTVFEFKPLEKLDVEKGLKRAVEVLNED
HHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHCCC
SYMDIECNNDAIEDIAILSDGDMRRALNILEVVVYSTKPNKDNITYIDSDVIRASTFNKI
CEEEEECCCCCHHHEEEECCCHHHHHHHHHHHHHCCCCCCCCCCEEECCHHHHHHHHHHH
INYDKNGDSHYDILSAFQKSIRGSDPQASIHYLARLIKGGDLISICRRLLVIASEDIGLA
HCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCC
YPNAIVIVKACVDSAMQLGFPEAKIPLAEATILLATSPKSNSACIAIMKAMDELDKEFVK
CCCHHHHHHHHHHHHHHCCCCCCCCCHHHEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
DIPNSIKDAHYSGSKEIGRGCGYKYPHNFKNHYVKQQYLPDSIKDSIYYIPQENKTEKNI
HHHHHHHHCCCCCCHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCEEECCCCCCCHHHH
KKYLEYLNSDF
HHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]