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The map label for this gene is codY [H]

Identifier: 126698872

GI number: 126698872

Start: 1481746

End: 1482531

Strand: Direct

Name: codY [H]

Synonym: CD1275

Alternate gene names: 126698872

Gene position: 1481746-1482531 (Clockwise)

Preceding gene: 126698871

Following gene: 126698873

Centisome position: 34.54

GC content: 31.68

Gene sequence:

>786_bases
ATGGCAAGTGAAGTGTTACAAAAAACAAGGAAAATAAATAAAACATTACAAACAAGTGGTGGAAGCAGTGTCTCTTTTGA
TTTACTGGCCGGAGCATTGGGCGACGTTTTAAGTTCTAATGTTTATGTAGTAAGTGCAAAAGGTAAAGTACTAGGTCTTC
ATTTAAATGATGTTCAAGACAGTTCAGTTATAGAAGATGAGTATACTAAGCAAAAGAAATTTTCAGATGAATATACTCAA
AATGTGTTAAAAATTGATGAAACATTAGAAAATTTAAATGGTGAGAAGATATTAGAAATCTTTCCTGAAGAACATGGAAG
ATTACAAAAATATACTACAGTAGTTCCAATATTAGGAAGCGGTCAAAGATTAGGAACATTGGTACTTTCAAGATATTCAA
ATTCATTCAATGATGATGATTTAGTAATAGCTGAATACAGTGCAACTGTTGTTGGTCTTGAAATATTAAGAGCAATAGGT
GAAGAATTAGAAGAAGAAATGAGAAAGAAAGCTGTAGTTCAAATGGCAATAGGCACTCTGTCCTACTCCGAGCTTGAAGC
AGTTGAACATATTTTTGCTGAATTGGATGGAAAAGAAGGTCTACTTGTAGCAAGTAAGATAGCTGATAGAGTTGGTATAA
CTAGGTCTGTAATAGTAAATGCACTTAGAAAATTTGAGAGTGCAGGTGTGATAGAATCAAGATCATTAGGTATGAAAGGT
ACTCATATAAGAATACTTAATGACAAACTTACAGATGAATTAAAAAAATTAAAAAACAATCAATAA

Upstream 100 bases:

>100_bases
AAACAACTAATAGAAAAATAAATTTTCATTAAATGTGAAAATAATATTAGAAAATATAAAAGGTTATTAAAAGGCCTAAA
TTTCATGAGGAGATGATTAA

Downstream 100 bases:

>100_bases
TCTATATTTTATAGGTTTAGATTAGAAAAGGTATCTATTTGAAATAGATACCTTTTTTAGACGAATTATTAAGGTAATGA
TAAGTATATTAAAAAGGAGT

Product: transcriptional repressor CodY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 260

Protein sequence:

>261_residues
MASEVLQKTRKINKTLQTSGGSSVSFDLLAGALGDVLSSNVYVVSAKGKVLGLHLNDVQDSSVIEDEYTKQKKFSDEYTQ
NVLKIDETLENLNGEKILEIFPEEHGRLQKYTTVVPILGSGQRLGTLVLSRYSNSFNDDDLVIAEYSATVVGLEILRAIG
EELEEEMRKKAVVQMAIGTLSYSELEAVEHIFAELDGKEGLLVASKIADRVGITRSVIVNALRKFESAGVIESRSLGMKG
THIRILNDKLTDELKKLKNNQ

Sequences:

>Translated_261_residues
MASEVLQKTRKINKTLQTSGGSSVSFDLLAGALGDVLSSNVYVVSAKGKVLGLHLNDVQDSSVIEDEYTKQKKFSDEYTQ
NVLKIDETLENLNGEKILEIFPEEHGRLQKYTTVVPILGSGQRLGTLVLSRYSNSFNDDDLVIAEYSATVVGLEILRAIG
EELEEEMRKKAVVQMAIGTLSYSELEAVEHIFAELDGKEGLLVASKIADRVGITRSVIVNALRKFESAGVIESRSLGMKG
THIRILNDKLTDELKKLKNNQ
>Mature_260_residues
ASEVLQKTRKINKTLQTSGGSSVSFDLLAGALGDVLSSNVYVVSAKGKVLGLHLNDVQDSSVIEDEYTKQKKFSDEYTQN
VLKIDETLENLNGEKILEIFPEEHGRLQKYTTVVPILGSGQRLGTLVLSRYSNSFNDDDLVIAEYSATVVGLEILRAIGE
ELEEEMRKKAVVQMAIGTLSYSELEAVEHIFAELDGKEGLLVASKIADRVGITRSVIVNALRKFESAGVIESRSLGMKGT
HIRILNDKLTDELKKLKNNQ

Specific function: DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of

COG id: COG4465

COG function: function code K; Pleiotropic transcriptional repressor

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CodY family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014154
- InterPro:   IPR010312
- InterPro:   IPR013198
- InterPro:   IPR011991 [H]

Pfam domain/function: PF06018 CodY; PF08222 HTH_CodY [H]

EC number: NA

Molecular weight: Translated: 28745; Mature: 28614

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASEVLQKTRKINKTLQTSGGSSVSFDLLAGALGDVLSSNVYVVSAKGKVLGLHLNDVQD
CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCEEEEEEECCCCC
SSVIEDEYTKQKKFSDEYTQNVLKIDETLENLNGEKILEIFPEEHGRLQKYTTVVPILGS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHCCHHCCCHHHHHEEEEECCC
GQRLGTLVLSRYSNSFNDDDLVIAEYSATVVGLEILRAIGEELEEEMRKKAVVQMAIGTL
CHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
SYSELEAVEHIFAELDGKEGLLVASKIADRVGITRSVIVNALRKFESAGVIESRSLGMKG
CHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCHHHHHHHHHHHHHHCCCEECCCCCCCC
THIRILNDKLTDELKKLKNNQ
CEEEEECHHHHHHHHHHHCCC
>Mature Secondary Structure 
ASEVLQKTRKINKTLQTSGGSSVSFDLLAGALGDVLSSNVYVVSAKGKVLGLHLNDVQD
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCEEEEEEECCCCC
SSVIEDEYTKQKKFSDEYTQNVLKIDETLENLNGEKILEIFPEEHGRLQKYTTVVPILGS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHCCHHCCCHHHHHEEEEECCC
GQRLGTLVLSRYSNSFNDDDLVIAEYSATVVGLEILRAIGEELEEEMRKKAVVQMAIGTL
CHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
SYSELEAVEHIFAELDGKEGLLVASKIADRVGITRSVIVNALRKFESAGVIESRSLGMKG
CHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCHHHHHHHHHHHHHHCCCEECCCCCCCC
THIRILNDKLTDELKKLKNNQ
CEEEEECHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12552129 [H]