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The map label for this gene is rimM

Identifier: 126698852

GI number: 126698852

Start: 1458171

End: 1458686

Strand: Direct

Name: rimM

Synonym: CD1255

Alternate gene names: 126698852

Gene position: 1458171-1458686 (Clockwise)

Preceding gene: 126698851

Following gene: 126698853

Centisome position: 33.99

GC content: 28.68

Gene sequence:

>516_bases
ATGAAAGAAAAATTAACTCATTTTAAGGTAGGTCAAATAGTAAATACACAAGGTTTAAAAGGTGAAGTAAGAGTTTATCC
ACTTACTGATGATATAGAGAGGTTTGATGAATTAAAAGATTTCTATCTGGGAAAAGATTTAAATAATAAATTGGCTGTTG
AAAAAGTAAGATACAAAGGTTCTATGGTTATAATGAAGATAAAAGGCATAGACAGCATAGAGAAAGCAGAAAAACTAAAA
AATAAATTTATGTATGTATCTAGAGAAGATAGCAGAGAGCTTGAAGAAGGCGAATTTTTTATAGCAGATATGATTGGAAT
GGAAGTTTTAACTGTAGATGGAAAATATGTAGGAATACTAGAAGATGTTCTTCAATACTCAGCAAATGATGTCTATGTAG
TAAAAGGTGAGGAAGATAAAGAATTTATGATACCAGCTATAAAAAAATTTGTACCTACAATAGATATTGATGAAAGAAAA
ATGATTATAGACCCTATTAAGGGAATGATAGATTAG

Upstream 100 bases:

>100_bases
GGATTAGGTATAATGCCTAGTCCTTTTTATATAAATGCGTAGTTTAAGATTTTATGATGATATGACCACATAAGATTAAA
TTTTTTAAGAAGGTGATAAC

Downstream 100 bases:

>100_bases
GTGGTAATATGAGATTTCATATAATGACACTTTTTCCAGAAATATTTAATTCTTACATGGATGAAAGTATAATGAAGAGA
GCAGTTGAAAAAGGTATAAT

Product: 16S rRNA processing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MKEKLTHFKVGQIVNTQGLKGEVRVYPLTDDIERFDELKDFYLGKDLNNKLAVEKVRYKGSMVIMKIKGIDSIEKAEKLK
NKFMYVSREDSRELEEGEFFIADMIGMEVLTVDGKYVGILEDVLQYSANDVYVVKGEEDKEFMIPAIKKFVPTIDIDERK
MIIDPIKGMID

Sequences:

>Translated_171_residues
MKEKLTHFKVGQIVNTQGLKGEVRVYPLTDDIERFDELKDFYLGKDLNNKLAVEKVRYKGSMVIMKIKGIDSIEKAEKLK
NKFMYVSREDSRELEEGEFFIADMIGMEVLTVDGKYVGILEDVLQYSANDVYVVKGEEDKEFMIPAIKKFVPTIDIDERK
MIIDPIKGMID
>Mature_171_residues
MKEKLTHFKVGQIVNTQGLKGEVRVYPLTDDIERFDELKDFYLGKDLNNKLAVEKVRYKGSMVIMKIKGIDSIEKAEKLK
NKFMYVSREDSRELEEGEFFIADMIGMEVLTVDGKYVGILEDVLQYSANDVYVVKGEEDKEFMIPAIKKFVPTIDIDERK
MIIDPIKGMID

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=147, Percent_Identity=27.2108843537415, Blast_Score=70, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_CLOD6 (Q18BB6)

Other databases:

- EMBL:   AM180355
- RefSeq:   YP_001087749.1
- ProteinModelPortal:   Q18BB6
- SMR:   Q18BB6
- STRING:   Q18BB6
- GeneID:   4913734
- GenomeReviews:   AM180355_GR
- KEGG:   cdf:CD1255
- NMPDR:   fig|1496.1.peg.35
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   TSCHGIN
- ProtClustDB:   CLSK2534771
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 19770; Mature: 19770

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEKLTHFKVGQIVNTQGLKGEVRVYPLTDDIERFDELKDFYLGKDLNNKLAVEKVRYKG
CCCCCCCEECCCEECCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCHHHHHHEECC
SMVIMKIKGIDSIEKAEKLKNKFMYVSREDSRELEEGEFFIADMIGMEVLTVDGKYVGIL
CEEEEEECCCCCHHHHHHHHHHEEEEECCCCCCCCCCCEEEEECCCEEEEEECCCCHHHH
EDVLQYSANDVYVVKGEEDKEFMIPAIKKFVPTIDIDERKMIIDPIKGMID
HHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCHHHCCC
>Mature Secondary Structure
MKEKLTHFKVGQIVNTQGLKGEVRVYPLTDDIERFDELKDFYLGKDLNNKLAVEKVRYKG
CCCCCCCEECCCEECCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCHHHHHHEECC
SMVIMKIKGIDSIEKAEKLKNKFMYVSREDSRELEEGEFFIADMIGMEVLTVDGKYVGIL
CEEEEEECCCCCHHHHHHHHHHEEEEECCCCCCCCCCCEEEEECCCEEEEEECCCCHHHH
EDVLQYSANDVYVVKGEEDKEFMIPAIKKFVPTIDIDERKMIIDPIKGMID
HHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA