| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126698771
Identifier: 126698771
GI number: 126698771
Start: 1376750
End: 1377274
Strand: Direct
Name: 126698771
Synonym: CD1176
Alternate gene names: NA
Gene position: 1376750-1377274 (Clockwise)
Preceding gene: 126698770
Following gene: 126698772
Centisome position: 32.09
GC content: 27.81
Gene sequence:
>525_bases ATGAAAGTTAGCATAGAAAAAATAAATAGAAAAGAAACTGACAAAATAGACTTGAATTTTTGTGAAAAAATTGATACTAT TAGTTATTGTGATGAGATTTACAAATTAGTATCACCTGTAAATTTAAAAGGGAAAGTGTCAAAGACTAATAAAGGTTTGT ATCTAGATATAGATGTCAATTTTACAATTGTTGACAATTGTTCAAGATGTCTTAAAGAAGTAGAAATACCACTAGAGTAT TCTATACAAGGTTTTTTAGTAAAAGAAGAAGATTATGATGAAGATGAGTTTGAGGAATTTGATCCTTTTATATTCGATGG TGAAGAAATCGACCTTATTGATATAATAGAACAGACATTAGATTTTAATGTACCTCATAAAGTTCTTTGTAGTGAAAACT GTAAAGGTCTTTGTCAAGTATGCGGGGCAAACTTAAATGAAGAAGAGTGTTCTTGCAGTGAAATTACAAACGATGAGGAA TACATAGATCCTCGTTTTGCTAAATTAAAAGATTTATTTAATTAA
Upstream 100 bases:
>100_bases TAAAATAATTAAATTAAACCTATGCCTATCAAGTAAAAATACTTGACAAACAAATGCTAGATTTGTATAATAAATTTGGT GATATGTTGAGGTGAACTTA
Downstream 100 bases:
>100_bases ATTTTGACTAAGGAGGTGGCGTAAATGGCAGTACCAAAGCGTAAAACGTCTAAATCAAACACAAAAATGAGAAGAGCAGC TAACTCAAAGATGGAAGCAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 174; Mature: 174
Protein sequence:
>174_residues MKVSIEKINRKETDKIDLNFCEKIDTISYCDEIYKLVSPVNLKGKVSKTNKGLYLDIDVNFTIVDNCSRCLKEVEIPLEY SIQGFLVKEEDYDEDEFEEFDPFIFDGEEIDLIDIIEQTLDFNVPHKVLCSENCKGLCQVCGANLNEEECSCSEITNDEE YIDPRFAKLKDLFN
Sequences:
>Translated_174_residues MKVSIEKINRKETDKIDLNFCEKIDTISYCDEIYKLVSPVNLKGKVSKTNKGLYLDIDVNFTIVDNCSRCLKEVEIPLEY SIQGFLVKEEDYDEDEFEEFDPFIFDGEEIDLIDIIEQTLDFNVPHKVLCSENCKGLCQVCGANLNEEECSCSEITNDEE YIDPRFAKLKDLFN >Mature_174_residues MKVSIEKINRKETDKIDLNFCEKIDTISYCDEIYKLVSPVNLKGKVSKTNKGLYLDIDVNFTIVDNCSRCLKEVEIPLEY SIQGFLVKEEDYDEDEFEEFDPFIFDGEEIDLIDIIEQTLDFNVPHKVLCSENCKGLCQVCGANLNEEECSCSEITNDEE YIDPRFAKLKDLFN
Specific function: Unknown
COG id: COG1399
COG function: function code R; Predicted metal-binding, possibly nucleic acid-binding protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20155; Mature: 20155
Theoretical pI: Translated: 4.00; Mature: 4.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
5.7 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 6.3 %Cys+Met (Translated Protein) 5.7 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 6.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVSIEKINRKETDKIDLNFCEKIDTISYCDEIYKLVSPVNLKGKVSKTNKGLYLDIDVN CCCCHHHCCCCCCCEECHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEEEEECC FTIVDNCSRCLKEVEIPLEYSIQGFLVKEEDYDEDEFEEFDPFIFDGEEIDLIDIIEQTL EEEHHHHHHHHHHCCCCEEECEEEEEEECCCCCHHHHHHCCCEEECCCCCHHHHHHHHHH DFNVPHKVLCSENCKGLCQVCGANLNEEECSCSEITNDEEYIDPRFAKLKDLFN CCCCCHHHHCCCCHHHHHHHHCCCCCCCCCCHHHCCCCHHHCCHHHHHHHHHCC >Mature Secondary Structure MKVSIEKINRKETDKIDLNFCEKIDTISYCDEIYKLVSPVNLKGKVSKTNKGLYLDIDVN CCCCHHHCCCCCCCEECHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEEEEECC FTIVDNCSRCLKEVEIPLEYSIQGFLVKEEDYDEDEFEEFDPFIFDGEEIDLIDIIEQTL EEEHHHHHHHHHHCCCCEEECEEEEEEECCCCCHHHHHHCCCEEECCCCCHHHHHHHHHH DFNVPHKVLCSENCKGLCQVCGANLNEEECSCSEITNDEEYIDPRFAKLKDLFN CCCCCHHHHCCCCHHHHHHHHCCCCCCCCCCHHHCCCCHHHCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA