Click here to switch to the map view.

The map label for this gene is cafA [H]

Identifier: 126698755

GI number: 126698755

Start: 1359696

End: 1361117

Strand: Direct

Name: cafA [H]

Synonym: CD1160

Alternate gene names: 126698755

Gene position: 1359696-1361117 (Clockwise)

Preceding gene: 126698754

Following gene: 126698756

Centisome position: 31.69

GC content: 26.44

Gene sequence:

>1422_bases
GTGAAAAAGATAGTTATTGAGTCCCTAATAGGGTCCCAGAAAACAGCAGTACTTGAAGATGAAAGATTAACAGAACTTTT
TGTTGAAGACAATTTAAATAAGAAGACTGTATCCAATATATATCGTGGAATCGTAAAAAAAGTTATACCAGGAATAGAAG
CTTGTTTTGTAGATATTGGATTTAAGAAACTTGCTTATTTACAATTAAAAAAGGGAAGTACTATAAAATCTGGTCAGGAT
ATTTTGGTTCAGATAAATAAAGAAGAAATAGGAACTAAAGGCGCAAAATTAAACACTGAGATTAGTATTTCTGGAAGGTA
TATTGTCTATATACCTTCCAATGATAGAACTACAATATCAAATAAAATTACTGATGAAAAAGAACGATTTAGATTAAAAA
AAATTACTAAGGCAGTAAATAAGGAAAATCTAGGATTAATAATAAGGACTGAGGCTCAAGGTTGCACTCATGATGAAATA
AAGAAAGATATAGAAGAGTTGAAATTAAAGTATGAAAACATTTTAAAAGAATATAAACTTGGTATAGGTCCGAAATTATT
ATATAAGTCTTTAGATTTTGCAACTAAATATGTAAAAGATAATGTGAATGATGATATTGAATCTATAATTACCAATAGTT
ATGATAAGTACTCTGAACTTAAGTCTATTTTAAGAGGTATAGATAAGACTTATGTTGATAAACTGTGTCTTGAGGAAAAT
AGAGATGTATTTGATTTATACAGAATAGAATCTAAAATAGAAAAATTATTAAATAAAAAAGTATGGTTAAAGAGTGGAGG
TTATTTAATAATTGAAAAAACAGAAGCTCTTACGGTTATAGATGTAAATACGGGTAAGTTTATTGGAACTGGTAAACTTG
ATGAAACCGTTTATAAAACTAATCTTGAAGCTGCAAAAGAAATTGTAAGACAGCTTAGAATTAGAGACATAGCTGGGATA
ATAATAATCGATTTTATTGATATGCATAAAAAGAAGCATCAAAAGGAGATTTTACACATCCTAGAAGAAGAATTTAATAA
AGATAAAAGAAAAGCTGAAGTATTAGGTATGACAAAACTTGGTTTAGTAGAAGTTGCTAGGCGTAGAGAAAAAGAATCCA
TTGATAAGTATTATTTAATGTCTTGTCCATGTTGTGATGGTGAACAAACAATAAAATCTGTACATTATATACTAGATAGT
ATTGAAAAAGAAATTATGAGAATAAGTGAACATACTGTTTACAAAAACATAATGGTAGAATTTAATGATTTTATTTTTGA
ACAAATAAAAGAATATTATATGGATATAATTGATAAAATTGGTGAAAAATATAATATAAAGATTTCTTTAAACGCAAATA
GTACATTAAAGCACAATAAAACCAATGTTATTTTCGATAAAATAGTTGACAATAAAATGTAA

Upstream 100 bases:

>100_bases
TTGATATTGACCCATTAGATGTTGATATATTGAGAAGAGATTTATATGTATTAGAAGATGGGGAATTAGTGACTCCTATG
TAAGCTCGAGAGGTGAAGTT

Downstream 100 bases:

>100_bases
ATATTTTATAATTAATAATTGTAATGCCGCACAGTAAAGGTTTAAATCTTCAAATGAAGTACCTTGTACTGGCGAGTTTG
AGGCCGAGGAGGTGTATTTA

Product: ribonuclease g

Products: NA

Alternate protein names: RNase G; Cytoplasmic axial filament protein [H]

Number of amino acids: Translated: 473; Mature: 473

Protein sequence:

>473_residues
MKKIVIESLIGSQKTAVLEDERLTELFVEDNLNKKTVSNIYRGIVKKVIPGIEACFVDIGFKKLAYLQLKKGSTIKSGQD
ILVQINKEEIGTKGAKLNTEISISGRYIVYIPSNDRTTISNKITDEKERFRLKKITKAVNKENLGLIIRTEAQGCTHDEI
KKDIEELKLKYENILKEYKLGIGPKLLYKSLDFATKYVKDNVNDDIESIITNSYDKYSELKSILRGIDKTYVDKLCLEEN
RDVFDLYRIESKIEKLLNKKVWLKSGGYLIIEKTEALTVIDVNTGKFIGTGKLDETVYKTNLEAAKEIVRQLRIRDIAGI
IIIDFIDMHKKKHQKEILHILEEEFNKDKRKAEVLGMTKLGLVEVARRREKESIDKYYLMSCPCCDGEQTIKSVHYILDS
IEKEIMRISEHTVYKNIMVEFNDFIFEQIKEYYMDIIDKIGEKYNIKISLNANSTLKHNKTNVIFDKIVDNKM

Sequences:

>Translated_473_residues
MKKIVIESLIGSQKTAVLEDERLTELFVEDNLNKKTVSNIYRGIVKKVIPGIEACFVDIGFKKLAYLQLKKGSTIKSGQD
ILVQINKEEIGTKGAKLNTEISISGRYIVYIPSNDRTTISNKITDEKERFRLKKITKAVNKENLGLIIRTEAQGCTHDEI
KKDIEELKLKYENILKEYKLGIGPKLLYKSLDFATKYVKDNVNDDIESIITNSYDKYSELKSILRGIDKTYVDKLCLEEN
RDVFDLYRIESKIEKLLNKKVWLKSGGYLIIEKTEALTVIDVNTGKFIGTGKLDETVYKTNLEAAKEIVRQLRIRDIAGI
IIIDFIDMHKKKHQKEILHILEEEFNKDKRKAEVLGMTKLGLVEVARRREKESIDKYYLMSCPCCDGEQTIKSVHYILDS
IEKEIMRISEHTVYKNIMVEFNDFIFEQIKEYYMDIIDKIGEKYNIKISLNANSTLKHNKTNVIFDKIVDNKM
>Mature_473_residues
MKKIVIESLIGSQKTAVLEDERLTELFVEDNLNKKTVSNIYRGIVKKVIPGIEACFVDIGFKKLAYLQLKKGSTIKSGQD
ILVQINKEEIGTKGAKLNTEISISGRYIVYIPSNDRTTISNKITDEKERFRLKKITKAVNKENLGLIIRTEAQGCTHDEI
KKDIEELKLKYENILKEYKLGIGPKLLYKSLDFATKYVKDNVNDDIESIITNSYDKYSELKSILRGIDKTYVDKLCLEEN
RDVFDLYRIESKIEKLLNKKVWLKSGGYLIIEKTEALTVIDVNTGKFIGTGKLDETVYKTNLEAAKEIVRQLRIRDIAGI
IIIDFIDMHKKKHQKEILHILEEEFNKDKRKAEVLGMTKLGLVEVARRREKESIDKYYLMSCPCCDGEQTIKSVHYILDS
IEKEIMRISEHTVYKNIMVEFNDFIFEQIKEYYMDIIDKIGEKYNIKISLNANSTLKHNKTNVIFDKIVDNKM

Specific function: Involved in the processing of the 5'-end of 16S rRNA. Could be involved in chromosome segregation and cell division. It may be one of the components of the cytoplasmic axial filaments bundles or merely regulate the formation of this structure [H]

COG id: COG1530

COG function: function code J; Ribonucleases G and E

Gene ontology:

Cell location: Cytoplasm, cytoskeleton [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Escherichia coli, GI87082235, Length=414, Percent_Identity=37.6811594202899, Blast_Score=271, Evalue=8e-74,
Organism=Escherichia coli, GI1787325, Length=466, Percent_Identity=31.5450643776824, Blast_Score=228, Evalue=8e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR019307
- InterPro:   IPR022967
- InterPro:   IPR004659 [H]

Pfam domain/function: PF10150 RNase_E_G; PF00575 S1 [H]

EC number: 3.1.4.- [C]

Molecular weight: Translated: 54772; Mature: 54772

Theoretical pI: Translated: 9.02; Mature: 9.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIVIESLIGSQKTAVLEDERLTELFVEDNLNKKTVSNIYRGIVKKVIPGIEACFVDIG
CCHHHHHHHHCCCCCEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCC
FKKLAYLQLKKGSTIKSGQDILVQINKEEIGTKGAKLNTEISISGRYIVYIPSNDRTTIS
HHHHEEEEECCCCCCCCCCEEEEEECHHHCCCCCCEECEEEEECCEEEEEECCCCCEEEC
NKITDEKERFRLKKITKAVNKENLGLIIRTEAQGCTHDEIKKDIEELKLKYENILKEYKL
CCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
GIGPKLLYKSLDFATKYVKDNVNDDIESIITNSYDKYSELKSILRGIDKTYVDKLCLEEN
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
RDVFDLYRIESKIEKLLNKKVWLKSGGYLIIEKTEALTVIDVNTGKFIGTGKLDETVYKT
CCHHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCEEEEEECCCCCEEECCCCHHHHHHC
NLEAAKEIVRQLRIRDIAGIIIIDFIDMHKKKHQKEILHILEEEFNKDKRKAEVLGMTKL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHH
GLVEVARRREKESIDKYYLMSCPCCDGEQTIKSVHYILDSIEKEIMRISEHTVYKNIMVE
HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FNDFIFEQIKEYYMDIIDKIGEKYNIKISLNANSTLKHNKTNVIFDKIVDNKM
HHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCC
>Mature Secondary Structure
MKKIVIESLIGSQKTAVLEDERLTELFVEDNLNKKTVSNIYRGIVKKVIPGIEACFVDIG
CCHHHHHHHHCCCCCEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCC
FKKLAYLQLKKGSTIKSGQDILVQINKEEIGTKGAKLNTEISISGRYIVYIPSNDRTTIS
HHHHEEEEECCCCCCCCCCEEEEEECHHHCCCCCCEECEEEEECCEEEEEECCCCCEEEC
NKITDEKERFRLKKITKAVNKENLGLIIRTEAQGCTHDEIKKDIEELKLKYENILKEYKL
CCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
GIGPKLLYKSLDFATKYVKDNVNDDIESIITNSYDKYSELKSILRGIDKTYVDKLCLEEN
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
RDVFDLYRIESKIEKLLNKKVWLKSGGYLIIEKTEALTVIDVNTGKFIGTGKLDETVYKT
CCHHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCEEEEEECCCCCEEECCCCHHHHHHC
NLEAAKEIVRQLRIRDIAGIIIIDFIDMHKKKHQKEILHILEEEFNKDKRKAEVLGMTKL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHH
GLVEVARRREKESIDKYYLMSCPCCDGEQTIKSVHYILDSIEKEIMRISEHTVYKNIMVE
HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FNDFIFEQIKEYYMDIIDKIGEKYNIKISLNANSTLKHNKTNVIFDKIVDNKM
HHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]