| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126698754
Identifier: 126698754
GI number: 126698754
Start: 1358977
End: 1359678
Strand: Direct
Name: 126698754
Synonym: CD1159
Alternate gene names: NA
Gene position: 1358977-1359678 (Clockwise)
Preceding gene: 126698753
Following gene: 126698755
Centisome position: 31.68
GC content: 28.77
Gene sequence:
>702_bases ATGAGTAAGATAATAAGAGTAAAATTTAAAAAGGAAGGCGACATGATATATATATCACATCTTGACCTTCAGAGATTGTT ACAAAGAGCGTTTAGAAGAGCTGAAATAAACTTATCACATTCTCAAGGATTTAATCCTCACCCTAAAATGAGTTATGGCA ATGCTTTGGCTTTAGGGACAGAAAGTCAAGGTGAGTATGTAGATATTGAAATAGAAGAAGATGATTTATCAGTAGAGGAA TTTTTAAATAAAGTATCAATTCAACTTCCAGATGGGATAGATTTTATCAAAGCAAAAGAAATTGATAGACAAACACCTTC TCTTTCTTCTGTGATAGACTATGGAGAATATTTGTTTAATATAGATTTGAAAAGACCTATGACGAAAGAGTTTGTAAAAA GAAAAGTAATTGACTTTATGAATAATAAAGAAATAATCATAACAAAAAAGAATAAAAAAGGTAAGATGGTTGAAGTAGAT ATAAGACCTATGATAAGAACCTTTGATGTTTTAAATTTAGAAGATGAACATATTACTCTTACTGCTACTATAGCTACAGG CTCAAAAACTAATTTAAATACTAATATACTTATACCAAAGATATTAGAGATGTTTGAACTTGATATTGACCCATTAGATG TTGATATATTGAGAAGAGATTTATATGTATTAGAAGATGGGGAATTAGTGACTCCTATGTAA
Upstream 100 bases:
>100_bases GACGAAAATGCTAAAAAAGAAAAAATCACTTCTGATTGTAGACATAACTGCAATGGTTGTGGAATAAATATACATGATAT AGGAAGGGGGCTTTGCTAAT
Downstream 100 bases:
>100_bases GCTCGAGAGGTGAAGTTGTGAAAAAGATAGTTATTGAGTCCCTAATAGGGTCCCAGAAAACAGCAGTACTTGAAGATGAA AGATTAACAGAACTTTTTGT
Product: hypothetical protein
Products: NA
Alternate protein names: Radical Sam Protein; Fe-S Oxidoreductase; Radical SAM Family Protein; Radical SAM Domain-Containing Protein
Number of amino acids: Translated: 233; Mature: 232
Protein sequence:
>233_residues MSKIIRVKFKKEGDMIYISHLDLQRLLQRAFRRAEINLSHSQGFNPHPKMSYGNALALGTESQGEYVDIEIEEDDLSVEE FLNKVSIQLPDGIDFIKAKEIDRQTPSLSSVIDYGEYLFNIDLKRPMTKEFVKRKVIDFMNNKEIIITKKNKKGKMVEVD IRPMIRTFDVLNLEDEHITLTATIATGSKTNLNTNILIPKILEMFELDIDPLDVDILRRDLYVLEDGELVTPM
Sequences:
>Translated_233_residues MSKIIRVKFKKEGDMIYISHLDLQRLLQRAFRRAEINLSHSQGFNPHPKMSYGNALALGTESQGEYVDIEIEEDDLSVEE FLNKVSIQLPDGIDFIKAKEIDRQTPSLSSVIDYGEYLFNIDLKRPMTKEFVKRKVIDFMNNKEIIITKKNKKGKMVEVD IRPMIRTFDVLNLEDEHITLTATIATGSKTNLNTNILIPKILEMFELDIDPLDVDILRRDLYVLEDGELVTPM >Mature_232_residues SKIIRVKFKKEGDMIYISHLDLQRLLQRAFRRAEINLSHSQGFNPHPKMSYGNALALGTESQGEYVDIEIEEDDLSVEEF LNKVSIQLPDGIDFIKAKEIDRQTPSLSSVIDYGEYLFNIDLKRPMTKEFVKRKVIDFMNNKEIIITKKNKKGKMVEVDI RPMIRTFDVLNLEDEHITLTATIATGSKTNLNTNILIPKILEMFELDIDPLDVDILRRDLYVLEDGELVTPM
Specific function: Unknown
COG id: COG5011
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26919; Mature: 26787
Theoretical pI: Translated: 4.95; Mature: 4.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKIIRVKFKKEGDMIYISHLDLQRLLQRAFRRAEINLSHSQGFNPHPKMSYGNALALGT CCCEEEEEEECCCCEEEEECCCHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCEEEECC ESQGEYVDIEIEEDDLSVEEFLNKVSIQLPDGIDFIKAKEIDRQTPSLSSVIDYGEYLFN CCCCCEEEEEEECCCCCHHHHHHHEEEECCCCCCCHHHHHHCCCCCCHHHHHHHCCEEEE IDLKRPMTKEFVKRKVIDFMNNKEIIITKKNKKGKMVEVDIRPMIRTFDVLNLEDEHITL EECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEECCHHHHHEEEECCCCCEEEE TATIATGSKTNLNTNILIPKILEMFELDIDPLDVDILRRDLYVLEDGELVTPM EEEEECCCCCCCCCEEEHHHHHHHHHCCCCCCCHHHHHCEEEEEECCCEECCC >Mature Secondary Structure SKIIRVKFKKEGDMIYISHLDLQRLLQRAFRRAEINLSHSQGFNPHPKMSYGNALALGT CCEEEEEEECCCCEEEEECCCHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCEEEECC ESQGEYVDIEIEEDDLSVEEFLNKVSIQLPDGIDFIKAKEIDRQTPSLSSVIDYGEYLFN CCCCCEEEEEEECCCCCHHHHHHHEEEECCCCCCCHHHHHHCCCCCCHHHHHHHCCEEEE IDLKRPMTKEFVKRKVIDFMNNKEIIITKKNKKGKMVEVDIRPMIRTFDVLNLEDEHITL EECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEECCHHHHHEEEECCCCCEEEE TATIATGSKTNLNTNILIPKILEMFELDIDPLDVDILRRDLYVLEDGELVTPM EEEEECCCCCCCCCEEEHHHHHHHHHCCCCCCCHHHHHCEEEEEECCCEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA