| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is mreC [H]
Identifier: 126698741
GI number: 126698741
Start: 1344188
End: 1345087
Strand: Direct
Name: mreC [H]
Synonym: CD1146
Alternate gene names: 126698741
Gene position: 1344188-1345087 (Clockwise)
Preceding gene: 126698740
Following gene: 126698742
Centisome position: 31.33
GC content: 30.22
Gene sequence:
>900_bases TTGGTGATGGCCTTGAGATTTGACAAGAACAAAAATGAGAAAAAAAGGATTAATGTTAAAGTGATAGCAACGGGCGTAGT TGCTATCACTTTAATTGGAATTGTGGGTATATCAATTGGTAAATTTTCTAGTGGTAGTCCAGTAAATTTAGGAGTAGCTT CAGATGCTATTACAAGTGTAGGTAAGGGAATAAATGATGGATTTTCTTTTATCAAAAATGGTTTTAAAGATGTAGCAAAT TTTAAAGATAATTCTAAAAAGGTAAAAAAATTAGAAGAAGAAAATGAAAAACTTAAAAAAAATATGATAGCTTTAAATGC CAAACTAGATAAAACAGAATCGCTAGAAGAGTTAAAAAAGACACTGAACTTTGTACAAGAAGAGTATAAGGCGACAAGTA TTTCAGCAAGTGTTGTTGGTAAAAATGATGGAAACTGGTATGAGAGTTTTGTCATAGGTGCAGGAAAAAATTCAGGTGTA AAAAAAGAAAGTATAGTTATGAATGGTAGTGGATTAGTTGGCATAGTTTATGAGGTTTCCAACAATTATAGTAAGGCAAT TTCACTATTGGATTCTAAGGCATCTGTAAGCTTTAAACTAGCAAAGGATGCCAATGCTAAAGGTACAATTACTCAAAATA CTACTTTAGATAATAAAGATAGTTATAATAGTAAAGGATATTTGCAAGGATATATGTTTGACTCATCATATAATGTAATT CAAGGAGATATAATAACAACATCAGGTCTTGGATTCTTCCCAGATGGTATACCAATTGGCGAAGTTGAAAAAGTGGTTGA TGATAAAGATAAGTCATTAAAATATGTAGTTGTAAAACCTTATGTTGATTTTAAGAATATAAATGACGTTGTAGTCATAG AACCAAGAAATATAGGATAA
Upstream 100 bases:
>100_bases AGAAACACCTCTTGATTGTGTTGCACTTGGAACAGGTAAATCTGTTGAAGACCAAGAAATCTTTGAAAAAGTATTAATGA TGAATACTAAGAATTAGAAG
Downstream 100 bases:
>100_bases AGGGGATAAAAACAATGAAAAAAGTTTTACTTTGTCTGTTGGGGATTGTGCTTATGACTATAGAAAATAGTATAACAAAT TATATAGATATTTTTGGCAT
Product: rod shape-determining protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 299; Mature: 299
Protein sequence:
>299_residues MVMALRFDKNKNEKKRINVKVIATGVVAITLIGIVGISIGKFSSGSPVNLGVASDAITSVGKGINDGFSFIKNGFKDVAN FKDNSKKVKKLEEENEKLKKNMIALNAKLDKTESLEELKKTLNFVQEEYKATSISASVVGKNDGNWYESFVIGAGKNSGV KKESIVMNGSGLVGIVYEVSNNYSKAISLLDSKASVSFKLAKDANAKGTITQNTTLDNKDSYNSKGYLQGYMFDSSYNVI QGDIITTSGLGFFPDGIPIGEVEKVVDDKDKSLKYVVVKPYVDFKNINDVVVIEPRNIG
Sequences:
>Translated_299_residues MVMALRFDKNKNEKKRINVKVIATGVVAITLIGIVGISIGKFSSGSPVNLGVASDAITSVGKGINDGFSFIKNGFKDVAN FKDNSKKVKKLEEENEKLKKNMIALNAKLDKTESLEELKKTLNFVQEEYKATSISASVVGKNDGNWYESFVIGAGKNSGV KKESIVMNGSGLVGIVYEVSNNYSKAISLLDSKASVSFKLAKDANAKGTITQNTTLDNKDSYNSKGYLQGYMFDSSYNVI QGDIITTSGLGFFPDGIPIGEVEKVVDDKDKSLKYVVVKPYVDFKNINDVVVIEPRNIG >Mature_299_residues MVMALRFDKNKNEKKRINVKVIATGVVAITLIGIVGISIGKFSSGSPVNLGVASDAITSVGKGINDGFSFIKNGFKDVAN FKDNSKKVKKLEEENEKLKKNMIALNAKLDKTESLEELKKTLNFVQEEYKATSISASVVGKNDGNWYESFVIGAGKNSGV KKESIVMNGSGLVGIVYEVSNNYSKAISLLDSKASVSFKLAKDANAKGTITQNTTLDNKDSYNSKGYLQGYMFDSSYNVI QGDIITTSGLGFFPDGIPIGEVEKVVDDKDKSLKYVVVKPYVDFKNINDVVVIEPRNIG
Specific function: Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins [H]
COG id: COG1792
COG function: function code M; Cell shape-determining protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mreC family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007221 - InterPro: IPR005223 [H]
Pfam domain/function: PF04085 MreC [H]
EC number: NA
Molecular weight: Translated: 32457; Mature: 32457
Theoretical pI: Translated: 9.73; Mature: 9.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVMALRFDKNKNEKKRINVKVIATGVVAITLIGIVGISIGKFSSGSPVNLGVASDAITSV CEEEEEECCCCCCCCEEEEEEEEHHHHHHHHHHHHHHEECCCCCCCCEEEECHHHHHHHH GKGINDGFSFIKNGFKDVANFKDNSKKVKKLEEENEKLKKNMIALNAKLDKTESLEELKK CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHH TLNFVQEEYKATSISASVVGKNDGNWYESFVIGAGKNSGVKKESIVMNGSGLVGIVYEVS HHHHHHHHHHHHEEEEEEEECCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEEEEEC NNYSKAISLLDSKASVSFKLAKDANAKGTITQNTTLDNKDSYNSKGYLQGYMFDSSYNVI CCHHHHHHHHCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCEEEEEEECCCCCEE QGDIITTSGLGFFPDGIPIGEVEKVVDDKDKSLKYVVVKPYVDFKNINDVVVIEPRNIG ECCEEEECCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEEECCCCCC >Mature Secondary Structure MVMALRFDKNKNEKKRINVKVIATGVVAITLIGIVGISIGKFSSGSPVNLGVASDAITSV CEEEEEECCCCCCCCEEEEEEEEHHHHHHHHHHHHHHEECCCCCCCCEEEECHHHHHHHH GKGINDGFSFIKNGFKDVANFKDNSKKVKKLEEENEKLKKNMIALNAKLDKTESLEELKK CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHH TLNFVQEEYKATSISASVVGKNDGNWYESFVIGAGKNSGVKKESIVMNGSGLVGIVYEVS HHHHHHHHHHHHEEEEEEEECCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEEEEEC NNYSKAISLLDSKASVSFKLAKDANAKGTITQNTTLDNKDSYNSKGYLQGYMFDSSYNVI CCHHHHHHHHCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCEEEEEEECCCCCEE QGDIITTSGLGFFPDGIPIGEVEKVVDDKDKSLKYVVVKPYVDFKNINDVVVIEPRNIG ECCEEEECCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1400225; 1400224; 9384377 [H]