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The map label for this gene is radC [C]

Identifier: 126698739

GI number: 126698739

Start: 1342346

End: 1343053

Strand: Direct

Name: radC [C]

Synonym: CD1144

Alternate gene names: 126698739

Gene position: 1342346-1343053 (Clockwise)

Preceding gene: 126698738

Following gene: 126698740

Centisome position: 31.29

GC content: 31.07

Gene sequence:

>708_bases
GTGATTTATCTGAAAAAGTCATTTAATTCAACCATTAAGGTAAAAGAGATGGCACCAGAGGAAAGACCCAGAGAAAAGAT
GCTTGCCAAAGGCGTAAAAAGCTTATCAAATGCTGAGTTGTTGGCTATACTTTTAAGAACTGGCAACAAGAATAAAAATG
CTATTGAATTAGCCAACTATATAATAAATAGAGATATTCAGGGTATTAGACATTTAGAAGATATGACAATAGAGGAGCTG
TGTAATATAGATGGAATTGGGTTATCAAAATCAACCCAAATTAAAGCAGCTTTAGAACTAGGCTCTAGAGTAGCTAGTTT
TAAACCTATAAAGTATAAAATAATGAATCCTTGGGATATACAGAGGTATTATATGGATAGCCTAAGGTATTTAAAAAAAG
AGGTTTTTAAAGCGGTTCTTTTAAACACAAAAAATGAGATAATATCTGATGTAGATGTATCTATAGGGACTTTAAGCTCG
TCATTAGTCCATCCAAGAGAGGTTTTTAAAGAAGCTATAAGAAGAAGTGCAAGTAAGATAATAGTGATGCATAATCACCC
TTCAGGAAGTGTAGAACCATCAAGAGAAGATAAAAATATCACATCAAGACTTATTAAATGTGGAGAAATAATTGGAATAG
AAATAATAGACCATATAATTATTGGAGATGGATTATACTTTAGCTTTAAAGAAAATATGATAATTTGA

Upstream 100 bases:

>100_bases
AAGAAATTAGAGGAGATTATTTTAATATAGTTGGTCTTCCAATTTCAAGGTTAGGCGACCTATTAAAAAAATATTTTAGT
ATAAATCTTTTTTATGGAGT

Downstream 100 bases:

>100_bases
CTTTATATGTGATAAAATAATAGGAGAATGTTTTAAACATGATTCTTAATAGTAGGAAGGAGTAAAATCATGGCTAAGGA
AAAAAAGAAAGAAAAAAAAG

Product: DNA repair protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MIYLKKSFNSTIKVKEMAPEERPREKMLAKGVKSLSNAELLAILLRTGNKNKNAIELANYIINRDIQGIRHLEDMTIEEL
CNIDGIGLSKSTQIKAALELGSRVASFKPIKYKIMNPWDIQRYYMDSLRYLKKEVFKAVLLNTKNEIISDVDVSIGTLSS
SLVHPREVFKEAIRRSASKIIVMHNHPSGSVEPSREDKNITSRLIKCGEIIGIEIIDHIIIGDGLYFSFKENMII

Sequences:

>Translated_235_residues
MIYLKKSFNSTIKVKEMAPEERPREKMLAKGVKSLSNAELLAILLRTGNKNKNAIELANYIINRDIQGIRHLEDMTIEEL
CNIDGIGLSKSTQIKAALELGSRVASFKPIKYKIMNPWDIQRYYMDSLRYLKKEVFKAVLLNTKNEIISDVDVSIGTLSS
SLVHPREVFKEAIRRSASKIIVMHNHPSGSVEPSREDKNITSRLIKCGEIIGIEIIDHIIIGDGLYFSFKENMII
>Mature_235_residues
MIYLKKSFNSTIKVKEMAPEERPREKMLAKGVKSLSNAELLAILLRTGNKNKNAIELANYIINRDIQGIRHLEDMTIEEL
CNIDGIGLSKSTQIKAALELGSRVASFKPIKYKIMNPWDIQRYYMDSLRYLKKEVFKAVLLNTKNEIISDVDVSIGTLSS
SLVHPREVFKEAIRRSASKIIVMHNHPSGSVEPSREDKNITSRLIKCGEIIGIEIIDHIIIGDGLYFSFKENMII

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=210, Percent_Identity=36.1904761904762, Blast_Score=147, Evalue=6e-37,
Organism=Escherichia coli, GI1788997, Length=105, Percent_Identity=40, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788312, Length=105, Percent_Identity=39.0476190476191, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI2367100, Length=105, Percent_Identity=37.1428571428571, Blast_Score=94, Evalue=7e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1144_CLOD6 (Q18B06)

Other databases:

- EMBL:   AM180355
- RefSeq:   YP_001087636.1
- ProteinModelPortal:   Q18B06
- SMR:   Q18B06
- STRING:   Q18B06
- GeneID:   4916296
- GenomeReviews:   AM180355_GR
- KEGG:   cdf:CD1144
- NMPDR:   fig|1496.1.peg.252
- eggNOG:   COG2003
- HOGENOM:   HBG751042
- OMA:   DKPREKL
- ProtClustDB:   CLSK2534703
- InterPro:   IPR001405
- InterPro:   IPR020891
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466

EC number: NA

Molecular weight: Translated: 26691; Mature: 26691

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYLKKSFNSTIKVKEMAPEERPREKMLAKGVKSLSNAELLAILLRTGNKNKNAIELANY
CEEEECCCCCEEEEHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHH
IINRDIQGIRHLEDMTIEELCNIDGIGLSKSTQIKAALELGSRVASFKPIKYKIMNPWDI
HHHCCHHHHHHHHHCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHH
QRYYMDSLRYLKKEVFKAVLLNTKNEIISDVDVSIGTLSSSLVHPREVFKEAIRRSASKI
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCCEE
IVMHNHPSGSVEPSREDKNITSRLIKCGEIIGIEIIDHIIIGDGLYFSFKENMII
EEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC
>Mature Secondary Structure
MIYLKKSFNSTIKVKEMAPEERPREKMLAKGVKSLSNAELLAILLRTGNKNKNAIELANY
CEEEECCCCCEEEEHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHH
IINRDIQGIRHLEDMTIEELCNIDGIGLSKSTQIKAALELGSRVASFKPIKYKIMNPWDI
HHHCCHHHHHHHHHCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHH
QRYYMDSLRYLKKEVFKAVLLNTKNEIISDVDVSIGTLSSSLVHPREVFKEAIRRSASKI
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCCEE
IVMHNHPSGSVEPSREDKNITSRLIKCGEIIGIEIIDHIIIGDGLYFSFKENMII
EEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA