| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is regX3 [H]
Identifier: 126698400
GI number: 126698400
Start: 995689
End: 996381
Strand: Direct
Name: regX3 [H]
Synonym: CD0820
Alternate gene names: 126698400
Gene position: 995689-996381 (Clockwise)
Preceding gene: 126698399
Following gene: 126698401
Centisome position: 23.21
GC content: 36.94
Gene sequence:
>693_bases ATGAATAAAGTTTTAATTATAGATGATGATAAAGATCTTTGTATTTTGTTAAAAAAGAGTATTTCAATTGAACAGATTGA AGCAAACTATTGCCATTCTGGGAGAGATGGACTGGTTGAACTTTCAAAACAAGATTATCAGTTAGTAGTTCTAGACGTGA TGATGCCAGGTATGGATGGTTTTGAAACTATGGAACAAATACGAAAATATAGCAGTATTCCCATCTTAATGCTGACATCA AAAAGCGATAATTACAGCAAAGTGCATGGATTGCGAGCTGGTGCAGATGACTATCTAACCAAACCATTTGAAATTACAGA ATTTACTGCTCGTGTACTGTCTTTAATCCGACGTTACACCCGTTTTAATCCAAAAAATGAGGAGCCACAGCAACTTTCTT TCAAAGGTTTGTTGATTGACCTTGACCAGCATACAGTTACTACCAATGGCGAACCTATGTTGCTTCCACCCAAGGAATTT GGTGTACTTCTTTACTGTGCAAGGCATCAGGGTAAGATTTTGACAAAACAGCAGATTTATGAAGCCGTGTGGGGTGAGCC ATATGTATATGATGACAGCAATATCATGGCTATTATCAGTCGCCTAAGAAAAAAAATTGAACTAGACCCATCATCTCCCA TCTATTTGCAAACAATAAAAGGAATTGGGTATCAATTCAACACGGAGGTATGA
Upstream 100 bases:
>100_bases TCATTGAGGAGCATATTCTAAATGATGTAAAGATACTACAATATGACTAAATTCCTAGTGATAAAAAAGTCTACGAATGA GTGTAGAAAGGGGAACTAAG
Downstream 100 bases:
>100_bases AAATGGATGAACAAACGATAATTCTTTTCTTACTCTTGCTGTCGATTGGTCTACTTTTTCTTTCCATATTTGCTTTTTCA AAGCTTGGGCATATTTACAA
Product: two-component response regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 230; Mature: 230
Protein sequence:
>230_residues MNKVLIIDDDKDLCILLKKSISIEQIEANYCHSGRDGLVELSKQDYQLVVLDVMMPGMDGFETMEQIRKYSSIPILMLTS KSDNYSKVHGLRAGADDYLTKPFEITEFTARVLSLIRRYTRFNPKNEEPQQLSFKGLLIDLDQHTVTTNGEPMLLPPKEF GVLLYCARHQGKILTKQQIYEAVWGEPYVYDDSNIMAIISRLRKKIELDPSSPIYLQTIKGIGYQFNTEV
Sequences:
>Translated_230_residues MNKVLIIDDDKDLCILLKKSISIEQIEANYCHSGRDGLVELSKQDYQLVVLDVMMPGMDGFETMEQIRKYSSIPILMLTS KSDNYSKVHGLRAGADDYLTKPFEITEFTARVLSLIRRYTRFNPKNEEPQQLSFKGLLIDLDQHTVTTNGEPMLLPPKEF GVLLYCARHQGKILTKQQIYEAVWGEPYVYDDSNIMAIISRLRKKIELDPSSPIYLQTIKGIGYQFNTEV >Mature_230_residues MNKVLIIDDDKDLCILLKKSISIEQIEANYCHSGRDGLVELSKQDYQLVVLDVMMPGMDGFETMEQIRKYSSIPILMLTS KSDNYSKVHGLRAGADDYLTKPFEITEFTARVLSLIRRYTRFNPKNEEPQQLSFKGLLIDLDQHTVTTNGEPMLLPPKEF GVLLYCARHQGKILTKQQIYEAVWGEPYVYDDSNIMAIISRLRKKIELDPSSPIYLQTIKGIGYQFNTEV
Specific function: Part of the two-component regulatory system senX3/regX3. Once phosphorylated by senX3, activates the expression of several operons/genes involved in phosphate assimilation and metabolism, such as pstSCAB, phnDCE, and phoA [H]
COG id: COG0745
COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI87082012, Length=224, Percent_Identity=33.0357142857143, Blast_Score=137, Evalue=8e-34, Organism=Escherichia coli, GI1786911, Length=228, Percent_Identity=32.4561403508772, Blast_Score=135, Evalue=2e-33, Organism=Escherichia coli, GI1789809, Length=227, Percent_Identity=32.15859030837, Blast_Score=132, Evalue=3e-32, Organism=Escherichia coli, GI1786784, Length=225, Percent_Identity=33.7777777777778, Blast_Score=129, Evalue=2e-31, Organism=Escherichia coli, GI1789402, Length=230, Percent_Identity=33.4782608695652, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI1786599, Length=234, Percent_Identity=29.9145299145299, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI1788394, Length=228, Percent_Identity=29.3859649122807, Blast_Score=117, Evalue=7e-28, Organism=Escherichia coli, GI2367329, Length=228, Percent_Identity=31.140350877193, Blast_Score=115, Evalue=2e-27, Organism=Escherichia coli, GI1790863, Length=227, Percent_Identity=29.0748898678414, Blast_Score=111, Evalue=4e-26, Organism=Escherichia coli, GI1790552, Length=232, Percent_Identity=31.0344827586207, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1787375, Length=225, Percent_Identity=28, Blast_Score=94, Evalue=6e-21, Organism=Escherichia coli, GI1787229, Length=233, Percent_Identity=27.4678111587983, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1790860, Length=227, Percent_Identity=27.7533039647577, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI145693140, Length=233, Percent_Identity=25.7510729613734, Blast_Score=82, Evalue=2e-17, Organism=Escherichia coli, GI1788550, Length=110, Percent_Identity=28.1818181818182, Blast_Score=72, Evalue=2e-14, Organism=Escherichia coli, GI1790299, Length=139, Percent_Identity=28.0575539568345, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1790437, Length=181, Percent_Identity=27.6243093922652, Blast_Score=71, Evalue=8e-14,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011006 - InterPro: IPR001867 - InterPro: IPR001789 - InterPro: IPR011991 [H]
Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]
EC number: NA
Molecular weight: Translated: 26405; Mature: 26405
Theoretical pI: Translated: 5.73; Mature: 5.73
Prosite motif: PS50110 RESPONSE_REGULATORY
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKVLIIDDDKDLCILLKKSISIEQIEANYCHSGRDGLVELSKQDYQLVVLDVMMPGMDG CCEEEEEECCCCEEEEEECCCCEEEEEHHCCCCCCCCEEEECCCCCEEEEEEEECCCCCC FETMEQIRKYSSIPILMLTSKSDNYSKVHGLRAGADDYLTKPFEITEFTARVLSLIRRYT HHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHH RFNPKNEEPQQLSFKGLLIDLDQHTVTTNGEPMLLPPKEFGVLLYCARHQGKILTKQQIY HCCCCCCCCCCEEEEEEEEECCCEEEECCCCEEEECHHHCCEEEEEECCCCCEECHHHHH EAVWGEPYVYDDSNIMAIISRLRKKIELDPSSPIYLQTIKGIGYQFNTEV HHHCCCCEEECCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEECCCC >Mature Secondary Structure MNKVLIIDDDKDLCILLKKSISIEQIEANYCHSGRDGLVELSKQDYQLVVLDVMMPGMDG CCEEEEEECCCCEEEEEECCCCEEEEEHHCCCCCCCCEEEECCCCCEEEEEEEECCCCCC FETMEQIRKYSSIPILMLTSKSDNYSKVHGLRAGADDYLTKPFEITEFTARVLSLIRRYT HHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHH RFNPKNEEPQQLSFKGLLIDLDQHTVTTNGEPMLLPPKEFGVLLYCARHQGKILTKQQIY HCCCCCCCCCCEEEEEEEEECCCEEEECCCCEEEECHHHCCEEEEEECCCCCEECHHHHH EAVWGEPYVYDDSNIMAIISRLRKKIELDPSSPIYLQTIKGIGYQFNTEV HHHCCCCEEECCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA