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The map label for this gene is yddU [C]

Identifier: 126698391

GI number: 126698391

Start: 983376

End: 985304

Strand: Direct

Name: yddU [C]

Synonym: CD0811

Alternate gene names: 126698391

Gene position: 983376-985304 (Clockwise)

Preceding gene: 126698390

Following gene: 126698392

Centisome position: 22.92

GC content: 28.2

Gene sequence:

>1929_bases
ATGGTATGGCATATAGAATATGAGATTTTTTCTGCAATTATAGTTATTTTTTTAATGGTATACTTTTTTAGAAGTAAATT
TATACCTACTTTACAAAACAAAATATATTGTGCACTTTTAATATTCTCATTTTTATTTATAATTTCAAATATTTTAGGTT
CATTTTGTCTAAATAATATAGACAAAATTCCAATTTTTATTACTTTTTTATTGAATCAGATATACTTATTGTTATTGCCA
ATACCAGCAGCACTTGTATCATTTTATGTTATGGCTATTATTTATCAAGACATAAGGTATATGAAAAAAAGATTATTATT
TTTATCTATACCACTTATAATTTGTATAATCTTATCTATTACAAATCCTTTTACGCATATTCTATTTGGATTGTCAAAAG
AAACAGGTTATATACGAGGTTGTGGATATGTTGCAACTTTTGCATCTTTTTTCTTTTATGCAATATATTCAGCATTTTTA
TCTTTTAAATATAGAAAAGCAATGCATGAATCAAAAATATGGGCTATTAGAGGTTTTCTTATAGTTTCAATTGTGGCAAT
TATCTTACAGGCAATTTTTTTACAGTATCTTCTTACAGGAACTGCATGTGCATGTAGTTTACTTTTGACATATCTTTCTA
TGCAGAATCGAGGTCTTATTATTGATGACCTTACTGGTGTACTCAATAGACAATCTTTTATTCAAGAGCTAGATTTGAAT
ATCAATACTGAACAATCAGGATTTATTATTACAATTGCGCTTGATGATTTTAAGTTTATGAATGAAACTTTTGGAACAAA
AAATGGAGATATTGCACTAAAAGAAGTTGGAAAATATTTGATTCAGATACATGATGTAAACCATGTATATAGAATAGGGG
GAGATATATTTTCTATTGTTGTCAATAGTCAATTAGGTATAGAACCAGATGATATTATCAGAAAGATAGAAGAAAGATTT
AAAAAGCCTTGGCTAGTAGAAGAGATAAGTTTTAATTTAGCAACTAGTATTGCTGTTGTTTATTACCCAGAAAATGCAGA
AACGACAGAAGATGTAATTGTTGCTATAGATTTCTCTATACATGAAGCAAAACGTTCTGAGTCAAGGCGAGTTGTTTATG
CAGATGCGTCTATAAGTGAAAAGATAAAGAAGAAACATGTTATTAAAAATTGTTTAAAAGAAGCATTAAAAAATGATGGG
TTTGAAGTGTACTACCAACCTATATTTTCTAATAGCAGGGGCAGGTTTACTTCAGCAGAGGCATTACTTAGGCTAGAACA
CAAAGAGTTAGGTTTTATACCTCCTGATGAATTTATTCCAATTGCAGAACAAACAGGATTGATTAACTCAATTGGATTAG
TAGTCTTTGAGAAGGTATGTAGATTTATAGCTAGTGATGAGTTTGAAAATTTAAAATTGGATAATATAGCTGTGAATCTT
TCTGTAGTACAATGTATGCAAAAAAACTTAGCTGATGATTTACTTTATCTTATGAATAAATATAATGTATCACCAACTAA
ATTTAAACTTGAAATTACTGAGACTGTGGCTATGGGCTCTTTTAATATAATAAAAGAAACAATGGAAAGATTAATTGATT
TAGGTGTTAAGTTTGCACTTGATGATTTTGGAATTGCTTATTCTGGAGTTACTAATATGCTTTCTTTACCATTTTCAGTA
ATTAAGTTAGATAAGAGTTTGATTTGGTCTATGAATGAAGATAGTAGGCATAAACTTACAGTTGAGACGATTATAGCACT
TATAAATAAATTGAATATGAAGGCTGTAGCAGAAGGTGTTGAAACCATTAAGTGTGCTGAAGATTTAATAGCTATGGAGT
GTGAATATTTGCAAGGGTATTATTTTTCTAAACCAGTTCCAGAAGATGTTTTTAAAAATTTGTTGAAAGAAAATACTTTT
ACAAGTTAA

Upstream 100 bases:

>100_bases
AAATTTTCCATAAAATTACTCAAGATGAATTATAATATAATTATAAATAAATTATATTATTAAAATATTTAAGATCAAAC
GTCAATAGCGAGGGAAGTTT

Downstream 100 bases:

>100_bases
CACCCTTTATTTTTTTAATTACAACTTTGTTCATTGACACTGCCAGCGATATATTATAAAATTAACACAATAATAAATAT
TAAATTTATTATACATATTA

Product: signaling protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 642; Mature: 642

Protein sequence:

>642_residues
MVWHIEYEIFSAIIVIFLMVYFFRSKFIPTLQNKIYCALLIFSFLFIISNILGSFCLNNIDKIPIFITFLLNQIYLLLLP
IPAALVSFYVMAIIYQDIRYMKKRLLFLSIPLIICIILSITNPFTHILFGLSKETGYIRGCGYVATFASFFFYAIYSAFL
SFKYRKAMHESKIWAIRGFLIVSIVAIILQAIFLQYLLTGTACACSLLLTYLSMQNRGLIIDDLTGVLNRQSFIQELDLN
INTEQSGFIITIALDDFKFMNETFGTKNGDIALKEVGKYLIQIHDVNHVYRIGGDIFSIVVNSQLGIEPDDIIRKIEERF
KKPWLVEEISFNLATSIAVVYYPENAETTEDVIVAIDFSIHEAKRSESRRVVYADASISEKIKKKHVIKNCLKEALKNDG
FEVYYQPIFSNSRGRFTSAEALLRLEHKELGFIPPDEFIPIAEQTGLINSIGLVVFEKVCRFIASDEFENLKLDNIAVNL
SVVQCMQKNLADDLLYLMNKYNVSPTKFKLEITETVAMGSFNIIKETMERLIDLGVKFALDDFGIAYSGVTNMLSLPFSV
IKLDKSLIWSMNEDSRHKLTVETIIALINKLNMKAVAEGVETIKCAEDLIAMECEYLQGYYFSKPVPEDVFKNLLKENTF
TS

Sequences:

>Translated_642_residues
MVWHIEYEIFSAIIVIFLMVYFFRSKFIPTLQNKIYCALLIFSFLFIISNILGSFCLNNIDKIPIFITFLLNQIYLLLLP
IPAALVSFYVMAIIYQDIRYMKKRLLFLSIPLIICIILSITNPFTHILFGLSKETGYIRGCGYVATFASFFFYAIYSAFL
SFKYRKAMHESKIWAIRGFLIVSIVAIILQAIFLQYLLTGTACACSLLLTYLSMQNRGLIIDDLTGVLNRQSFIQELDLN
INTEQSGFIITIALDDFKFMNETFGTKNGDIALKEVGKYLIQIHDVNHVYRIGGDIFSIVVNSQLGIEPDDIIRKIEERF
KKPWLVEEISFNLATSIAVVYYPENAETTEDVIVAIDFSIHEAKRSESRRVVYADASISEKIKKKHVIKNCLKEALKNDG
FEVYYQPIFSNSRGRFTSAEALLRLEHKELGFIPPDEFIPIAEQTGLINSIGLVVFEKVCRFIASDEFENLKLDNIAVNL
SVVQCMQKNLADDLLYLMNKYNVSPTKFKLEITETVAMGSFNIIKETMERLIDLGVKFALDDFGIAYSGVTNMLSLPFSV
IKLDKSLIWSMNEDSRHKLTVETIIALINKLNMKAVAEGVETIKCAEDLIAMECEYLQGYYFSKPVPEDVFKNLLKENTF
TS
>Mature_642_residues
MVWHIEYEIFSAIIVIFLMVYFFRSKFIPTLQNKIYCALLIFSFLFIISNILGSFCLNNIDKIPIFITFLLNQIYLLLLP
IPAALVSFYVMAIIYQDIRYMKKRLLFLSIPLIICIILSITNPFTHILFGLSKETGYIRGCGYVATFASFFFYAIYSAFL
SFKYRKAMHESKIWAIRGFLIVSIVAIILQAIFLQYLLTGTACACSLLLTYLSMQNRGLIIDDLTGVLNRQSFIQELDLN
INTEQSGFIITIALDDFKFMNETFGTKNGDIALKEVGKYLIQIHDVNHVYRIGGDIFSIVVNSQLGIEPDDIIRKIEERF
KKPWLVEEISFNLATSIAVVYYPENAETTEDVIVAIDFSIHEAKRSESRRVVYADASISEKIKKKHVIKNCLKEALKNDG
FEVYYQPIFSNSRGRFTSAEALLRLEHKELGFIPPDEFIPIAEQTGLINSIGLVVFEKVCRFIASDEFENLKLDNIAVNL
SVVQCMQKNLADDLLYLMNKYNVSPTKFKLEITETVAMGSFNIIKETMERLIDLGVKFALDDFGIAYSGVTNMLSLPFSV
IKLDKSLIWSMNEDSRHKLTVETIIALINKLNMKAVAEGVETIKCAEDLIAMECEYLQGYYFSKPVPEDVFKNLLKENTF
TS

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=418, Percent_Identity=28.4688995215311, Blast_Score=172, Evalue=5e-44,
Organism=Escherichia coli, GI1787541, Length=421, Percent_Identity=27.3159144893112, Blast_Score=164, Evalue=2e-41,
Organism=Escherichia coli, GI226510982, Length=313, Percent_Identity=30.0319488817891, Blast_Score=146, Evalue=4e-36,
Organism=Escherichia coli, GI1786507, Length=247, Percent_Identity=32.7935222672065, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI87081743, Length=254, Percent_Identity=30.7086614173228, Blast_Score=123, Evalue=3e-29,
Organism=Escherichia coli, GI1790496, Length=249, Percent_Identity=31.7269076305221, Blast_Score=122, Evalue=6e-29,
Organism=Escherichia coli, GI1788849, Length=343, Percent_Identity=25.3644314868805, Blast_Score=119, Evalue=8e-28,
Organism=Escherichia coli, GI87081845, Length=247, Percent_Identity=29.9595141700405, Blast_Score=115, Evalue=1e-26,
Organism=Escherichia coli, GI87082096, Length=420, Percent_Identity=24.2857142857143, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1788502, Length=250, Percent_Identity=30, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI87081980, Length=250, Percent_Identity=31.6, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787055, Length=255, Percent_Identity=27.843137254902, Blast_Score=85, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 73358; Mature: 73358

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVWHIEYEIFSAIIVIFLMVYFFRSKFIPTLQNKIYCALLIFSFLFIISNILGSFCLNNI
CEEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DKIPIFITFLLNQIYLLLLPIPAALVSFYVMAIIYQDIRYMKKRLLFLSIPLIICIILSI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TNPFTHILFGLSKETGYIRGCGYVATFASFFFYAIYSAFLSFKYRKAMHESKIWAIRGFL
CCHHHHHHHHCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVSIVAIILQAIFLQYLLTGTACACSLLLTYLSMQNRGLIIDDLTGVLNRQSFIQELDLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHCCC
INTEQSGFIITIALDDFKFMNETFGTKNGDIALKEVGKYLIQIHDVNHVYRIGGDIFSIV
CCCCCCCEEEEEEECCHHHHHHHCCCCCCCCHHHHHHHHHEEHCCCCHHHHHCCHHHHHH
VNSQLGIEPDDIIRKIEERFKKPWLVEEISFNLATSIAVVYYPENAETTEDVIVAIDFSI
CCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHEEEEEEEEECCCCCCCCCEEEEEECHH
HEAKRSESRRVVYADASISEKIKKKHVIKNCLKEALKNDGFEVYYQPIFSNSRGRFTSAE
HHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHH
ALLRLEHKELGFIPPDEFIPIAEQTGLINSIGLVVFEKVCRFIASDEFENLKLDNIAVNL
HHHHHHHHHCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCEECCEEEHH
SVVQCMQKNLADDLLYLMNKYNVSPTKFKLEITETVAMGSFNIIKETMERLIDLGVKFAL
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHCHHHHHHHHHHHHHHCCHHHHH
DDFGIAYSGVTNMLSLPFSVIKLDKSLIWSMNEDSRHKLTVETIIALINKLNMKAVAEGV
HHCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHH
ETIKCAEDLIAMECEYLQGYYFSKPVPEDVFKNLLKENTFTS
HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCC
>Mature Secondary Structure
MVWHIEYEIFSAIIVIFLMVYFFRSKFIPTLQNKIYCALLIFSFLFIISNILGSFCLNNI
CEEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DKIPIFITFLLNQIYLLLLPIPAALVSFYVMAIIYQDIRYMKKRLLFLSIPLIICIILSI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TNPFTHILFGLSKETGYIRGCGYVATFASFFFYAIYSAFLSFKYRKAMHESKIWAIRGFL
CCHHHHHHHHCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVSIVAIILQAIFLQYLLTGTACACSLLLTYLSMQNRGLIIDDLTGVLNRQSFIQELDLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHCCC
INTEQSGFIITIALDDFKFMNETFGTKNGDIALKEVGKYLIQIHDVNHVYRIGGDIFSIV
CCCCCCCEEEEEEECCHHHHHHHCCCCCCCCHHHHHHHHHEEHCCCCHHHHHCCHHHHHH
VNSQLGIEPDDIIRKIEERFKKPWLVEEISFNLATSIAVVYYPENAETTEDVIVAIDFSI
CCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHEEEEEEEEECCCCCCCCCEEEEEECHH
HEAKRSESRRVVYADASISEKIKKKHVIKNCLKEALKNDGFEVYYQPIFSNSRGRFTSAE
HHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHH
ALLRLEHKELGFIPPDEFIPIAEQTGLINSIGLVVFEKVCRFIASDEFENLKLDNIAVNL
HHHHHHHHHCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCEECCEEEHH
SVVQCMQKNLADDLLYLMNKYNVSPTKFKLEITETVAMGSFNIIKETMERLIDLGVKFAL
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHCHHHHHHHHHHHHHHCCHHHHH
DDFGIAYSGVTNMLSLPFSVIKLDKSLIWSMNEDSRHKLTVETIIALINKLNMKAVAEGV
HHCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHH
ETIKCAEDLIAMECEYLQGYYFSKPVPEDVFKNLLKENTFTS
HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]