Definition Clostridium difficile 630 chromosome, complete genome.
Accession NC_009089
Length 4,290,252

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The map label for this gene is yxjC [H]

Identifier: 126698381

GI number: 126698381

Start: 973198

End: 974538

Strand: Direct

Name: yxjC [H]

Synonym: CD0801

Alternate gene names: 126698381

Gene position: 973198-974538 (Clockwise)

Preceding gene: 126698380

Following gene: 126698382

Centisome position: 22.68

GC content: 35.35

Gene sequence:

>1341_bases
ATGAATACGGGAGTAATTATAAGTTTAGTAGGGATTATCATAGCTCTATCTCTTCTAGTTGTAATGGTTATGAAGGGAAT
AAATATTTTTATTATAGCAATTGTATGTTCATCATTAGTTGCTATAACAGGAAGCCTAAATGTGTATGATGCACTTAAAG
TGGATTATATGACAGGGTTTGTTGGATTTCTTCAGGCAAATTTCTTTATTTTCCTAACAGGGACATTAATGGGAAAAATA
ATGGAGATTACTGGTGGAGCAAAATCTATTGCTAAGATGATTGTAAGATGGATTGGGAAGGATAAAGCACTACTTTCTAT
TCCAATAGCTTGTGGAATATTAGCCTATGGTGGAGTAAGTGTTTTCGTTGTAAGTTTTGCAGTGTTTCCGATAGCTTTAG
AAATTTTTAAAGAAGCTGATTTGCCACGAAGATTTATACCAGCAGCTTTGACTTTTGGATGCTCAACTTTTGCTATGGTT
GCACCAGGGGCACCACAAATTCAGAATATTGTTCCAGCATCAACATTAGGGACAGATATTATGGCTGGAGCAGTAAATGG
TTTTATATCATGTGCAGTAATGTTTATAGTTGGAAGTACCATTTTGTACAAAATGGTTTCAAAAGAAAAAGCCAATGGTG
GTCATTTTATAGCACATGAATCAGATATATTTGATGAAGCAGAAGCAACTAATTCTAAGAGAGAAAATGGTCCCAATGGT
GTAATTGCCTTAATTCCATTGATAGTGTCAATTTTAATAATTAATGTAAAAGTTAATGGAAAAGCGATAGTACCAATTGA
GGTGGGAGTATTTATTGGAGCTTTATTAGTATATTTATTGTTAAATAAATATCAAGATAATACTAAAATAGTTGGACATG
TTGGTGATGCATGTAAAACTACAGTAGTAGCAATATGTAATACTTGTGCTGTAGTTGCATTTGGTTCAGTAGTAAAATCA
GCAGTTGGTTTTGACTTCATAGTTAATGCTATGACTAATATTCCTGGTCCTCCTATTGCAGGGGCTGCAGTTGGAACTAC
AGTTATTGCAGGTATTTGTGGGTCAGCTTCAGGTGGACTAGGAATTGCAGCTCCACTTCTTGGACCAGTATTTTTAGCCA
AGGGTGTTTCCGCTGCAGCATTAACTAGGACTATGGCAATTTCATCAGCAGCATTAGATTCACTTCCACACAATGGATAT
ATTGTTACTGTAACAAATGGTCTTTGTAAAGAAACACATAAGGATGCCTATATGCCAATATTCTGGGTAACTGTTTTAAC
CCCATTTATTGGAACCATAGTAGCAGTCCTACTGTTTACAATGTTCCCGGGATTGCCATAA

Upstream 100 bases:

>100_bases
AAGTAGCTATTATAACTAAAATTGGAACAATGTAGAATATATTCAAAATCTAAATTTCGTGAAAAAATACATATAGTTTA
ATTTTAAAAGGAGTTAATTT

Downstream 100 bases:

>100_bases
GAGAAAAGATAAAAGGTATAAATTATATTTTGATATTATAAAATCAATTTTCAAAATATATACAATAAATTTCATGTTTT
AATACTGTAAATATGTATTT

Product: permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 446; Mature: 446

Protein sequence:

>446_residues
MNTGVIISLVGIIIALSLLVVMVMKGINIFIIAIVCSSLVAITGSLNVYDALKVDYMTGFVGFLQANFFIFLTGTLMGKI
MEITGGAKSIAKMIVRWIGKDKALLSIPIACGILAYGGVSVFVVSFAVFPIALEIFKEADLPRRFIPAALTFGCSTFAMV
APGAPQIQNIVPASTLGTDIMAGAVNGFISCAVMFIVGSTILYKMVSKEKANGGHFIAHESDIFDEAEATNSKRENGPNG
VIALIPLIVSILIINVKVNGKAIVPIEVGVFIGALLVYLLLNKYQDNTKIVGHVGDACKTTVVAICNTCAVVAFGSVVKS
AVGFDFIVNAMTNIPGPPIAGAAVGTTVIAGICGSASGGLGIAAPLLGPVFLAKGVSAAALTRTMAISSAALDSLPHNGY
IVTVTNGLCKETHKDAYMPIFWVTVLTPFIGTIVAVLLFTMFPGLP

Sequences:

>Translated_446_residues
MNTGVIISLVGIIIALSLLVVMVMKGINIFIIAIVCSSLVAITGSLNVYDALKVDYMTGFVGFLQANFFIFLTGTLMGKI
MEITGGAKSIAKMIVRWIGKDKALLSIPIACGILAYGGVSVFVVSFAVFPIALEIFKEADLPRRFIPAALTFGCSTFAMV
APGAPQIQNIVPASTLGTDIMAGAVNGFISCAVMFIVGSTILYKMVSKEKANGGHFIAHESDIFDEAEATNSKRENGPNG
VIALIPLIVSILIINVKVNGKAIVPIEVGVFIGALLVYLLLNKYQDNTKIVGHVGDACKTTVVAICNTCAVVAFGSVVKS
AVGFDFIVNAMTNIPGPPIAGAAVGTTVIAGICGSASGGLGIAAPLLGPVFLAKGVSAAALTRTMAISSAALDSLPHNGY
IVTVTNGLCKETHKDAYMPIFWVTVLTPFIGTIVAVLLFTMFPGLP
>Mature_446_residues
MNTGVIISLVGIIIALSLLVVMVMKGINIFIIAIVCSSLVAITGSLNVYDALKVDYMTGFVGFLQANFFIFLTGTLMGKI
MEITGGAKSIAKMIVRWIGKDKALLSIPIACGILAYGGVSVFVVSFAVFPIALEIFKEADLPRRFIPAALTFGCSTFAMV
APGAPQIQNIVPASTLGTDIMAGAVNGFISCAVMFIVGSTILYKMVSKEKANGGHFIAHESDIFDEAEATNSKRENGPNG
VIALIPLIVSILIINVKVNGKAIVPIEVGVFIGALLVYLLLNKYQDNTKIVGHVGDACKTTVVAICNTCAVVAFGSVVKS
AVGFDFIVNAMTNIPGPPIAGAAVGTTVIAGICGSASGGLGIAAPLLGPVFLAKGVSAAALTRTMAISSAALDSLPHNGY
IVTVTNGLCKETHKDAYMPIFWVTVLTPFIGTIVAVLLFTMFPGLP

Specific function: Unknown

COG id: COG2610

COG function: function code GE; H+/gluconate symporter and related permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitM (TC 2.A.11) transporter family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004680 [H]

Pfam domain/function: PF03600 CitMHS [H]

EC number: NA

Molecular weight: Translated: 46327; Mature: 46327

Theoretical pI: Translated: 8.31; Mature: 8.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTGVIISLVGIIIALSLLVVMVMKGINIFIIAIVCSSLVAITGSLNVYDALKVDYMTGF
CCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
VGFLQANFFIFLTGTLMGKIMEITGGAKSIAKMIVRWIGKDKALLSIPIACGILAYGGVS
HHHHHHCHHEEEHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHCHHH
VFVVSFAVFPIALEIFKEADLPRRFIPAALTFGCSTFAMVAPGAPQIQNIVPASTLGTDI
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHEEECCCCCHHHHCCCCHHHHHHH
MAGAVNGFISCAVMFIVGSTILYKMVSKEKANGGHFIAHESDIFDEAEATNSKRENGPNG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCC
VIALIPLIVSILIINVKVNGKAIVPIEVGVFIGALLVYLLLNKYQDNTKIVGHVGDACKT
HHHHHHHHHHHHHEEEEECCEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHH
TVVAICNTCAVVAFGSVVKSAVGFDFIVNAMTNIPGPPIAGAAVGTTVIAGICGSASGGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCC
GIAAPLLGPVFLAKGVSAAALTRTMAISSAALDSLPHNGYIVTVTNGLCKETHKDAYMPI
CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHCCCCCCHH
FWVTVLTPFIGTIVAVLLFTMFPGLP
HHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNTGVIISLVGIIIALSLLVVMVMKGINIFIIAIVCSSLVAITGSLNVYDALKVDYMTGF
CCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
VGFLQANFFIFLTGTLMGKIMEITGGAKSIAKMIVRWIGKDKALLSIPIACGILAYGGVS
HHHHHHCHHEEEHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHCHHH
VFVVSFAVFPIALEIFKEADLPRRFIPAALTFGCSTFAMVAPGAPQIQNIVPASTLGTDI
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHEEECCCCCHHHHCCCCHHHHHHH
MAGAVNGFISCAVMFIVGSTILYKMVSKEKANGGHFIAHESDIFDEAEATNSKRENGPNG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCC
VIALIPLIVSILIINVKVNGKAIVPIEVGVFIGALLVYLLLNKYQDNTKIVGHVGDACKT
HHHHHHHHHHHHHEEEEECCEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHH
TVVAICNTCAVVAFGSVVKSAVGFDFIVNAMTNIPGPPIAGAAVGTTVIAGICGSASGGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCC
GIAAPLLGPVFLAKGVSAAALTRTMAISSAALDSLPHNGYIVTVTNGLCKETHKDAYMPI
CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHCCCCCCHH
FWVTVLTPFIGTIVAVLLFTMFPGLP
HHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377; 10568751 [H]