| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is yxjC [H]
Identifier: 126698381
GI number: 126698381
Start: 973198
End: 974538
Strand: Direct
Name: yxjC [H]
Synonym: CD0801
Alternate gene names: 126698381
Gene position: 973198-974538 (Clockwise)
Preceding gene: 126698380
Following gene: 126698382
Centisome position: 22.68
GC content: 35.35
Gene sequence:
>1341_bases ATGAATACGGGAGTAATTATAAGTTTAGTAGGGATTATCATAGCTCTATCTCTTCTAGTTGTAATGGTTATGAAGGGAAT AAATATTTTTATTATAGCAATTGTATGTTCATCATTAGTTGCTATAACAGGAAGCCTAAATGTGTATGATGCACTTAAAG TGGATTATATGACAGGGTTTGTTGGATTTCTTCAGGCAAATTTCTTTATTTTCCTAACAGGGACATTAATGGGAAAAATA ATGGAGATTACTGGTGGAGCAAAATCTATTGCTAAGATGATTGTAAGATGGATTGGGAAGGATAAAGCACTACTTTCTAT TCCAATAGCTTGTGGAATATTAGCCTATGGTGGAGTAAGTGTTTTCGTTGTAAGTTTTGCAGTGTTTCCGATAGCTTTAG AAATTTTTAAAGAAGCTGATTTGCCACGAAGATTTATACCAGCAGCTTTGACTTTTGGATGCTCAACTTTTGCTATGGTT GCACCAGGGGCACCACAAATTCAGAATATTGTTCCAGCATCAACATTAGGGACAGATATTATGGCTGGAGCAGTAAATGG TTTTATATCATGTGCAGTAATGTTTATAGTTGGAAGTACCATTTTGTACAAAATGGTTTCAAAAGAAAAAGCCAATGGTG GTCATTTTATAGCACATGAATCAGATATATTTGATGAAGCAGAAGCAACTAATTCTAAGAGAGAAAATGGTCCCAATGGT GTAATTGCCTTAATTCCATTGATAGTGTCAATTTTAATAATTAATGTAAAAGTTAATGGAAAAGCGATAGTACCAATTGA GGTGGGAGTATTTATTGGAGCTTTATTAGTATATTTATTGTTAAATAAATATCAAGATAATACTAAAATAGTTGGACATG TTGGTGATGCATGTAAAACTACAGTAGTAGCAATATGTAATACTTGTGCTGTAGTTGCATTTGGTTCAGTAGTAAAATCA GCAGTTGGTTTTGACTTCATAGTTAATGCTATGACTAATATTCCTGGTCCTCCTATTGCAGGGGCTGCAGTTGGAACTAC AGTTATTGCAGGTATTTGTGGGTCAGCTTCAGGTGGACTAGGAATTGCAGCTCCACTTCTTGGACCAGTATTTTTAGCCA AGGGTGTTTCCGCTGCAGCATTAACTAGGACTATGGCAATTTCATCAGCAGCATTAGATTCACTTCCACACAATGGATAT ATTGTTACTGTAACAAATGGTCTTTGTAAAGAAACACATAAGGATGCCTATATGCCAATATTCTGGGTAACTGTTTTAAC CCCATTTATTGGAACCATAGTAGCAGTCCTACTGTTTACAATGTTCCCGGGATTGCCATAA
Upstream 100 bases:
>100_bases AAGTAGCTATTATAACTAAAATTGGAACAATGTAGAATATATTCAAAATCTAAATTTCGTGAAAAAATACATATAGTTTA ATTTTAAAAGGAGTTAATTT
Downstream 100 bases:
>100_bases GAGAAAAGATAAAAGGTATAAATTATATTTTGATATTATAAAATCAATTTTCAAAATATATACAATAAATTTCATGTTTT AATACTGTAAATATGTATTT
Product: permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 446; Mature: 446
Protein sequence:
>446_residues MNTGVIISLVGIIIALSLLVVMVMKGINIFIIAIVCSSLVAITGSLNVYDALKVDYMTGFVGFLQANFFIFLTGTLMGKI MEITGGAKSIAKMIVRWIGKDKALLSIPIACGILAYGGVSVFVVSFAVFPIALEIFKEADLPRRFIPAALTFGCSTFAMV APGAPQIQNIVPASTLGTDIMAGAVNGFISCAVMFIVGSTILYKMVSKEKANGGHFIAHESDIFDEAEATNSKRENGPNG VIALIPLIVSILIINVKVNGKAIVPIEVGVFIGALLVYLLLNKYQDNTKIVGHVGDACKTTVVAICNTCAVVAFGSVVKS AVGFDFIVNAMTNIPGPPIAGAAVGTTVIAGICGSASGGLGIAAPLLGPVFLAKGVSAAALTRTMAISSAALDSLPHNGY IVTVTNGLCKETHKDAYMPIFWVTVLTPFIGTIVAVLLFTMFPGLP
Sequences:
>Translated_446_residues MNTGVIISLVGIIIALSLLVVMVMKGINIFIIAIVCSSLVAITGSLNVYDALKVDYMTGFVGFLQANFFIFLTGTLMGKI MEITGGAKSIAKMIVRWIGKDKALLSIPIACGILAYGGVSVFVVSFAVFPIALEIFKEADLPRRFIPAALTFGCSTFAMV APGAPQIQNIVPASTLGTDIMAGAVNGFISCAVMFIVGSTILYKMVSKEKANGGHFIAHESDIFDEAEATNSKRENGPNG VIALIPLIVSILIINVKVNGKAIVPIEVGVFIGALLVYLLLNKYQDNTKIVGHVGDACKTTVVAICNTCAVVAFGSVVKS AVGFDFIVNAMTNIPGPPIAGAAVGTTVIAGICGSASGGLGIAAPLLGPVFLAKGVSAAALTRTMAISSAALDSLPHNGY IVTVTNGLCKETHKDAYMPIFWVTVLTPFIGTIVAVLLFTMFPGLP >Mature_446_residues MNTGVIISLVGIIIALSLLVVMVMKGINIFIIAIVCSSLVAITGSLNVYDALKVDYMTGFVGFLQANFFIFLTGTLMGKI MEITGGAKSIAKMIVRWIGKDKALLSIPIACGILAYGGVSVFVVSFAVFPIALEIFKEADLPRRFIPAALTFGCSTFAMV APGAPQIQNIVPASTLGTDIMAGAVNGFISCAVMFIVGSTILYKMVSKEKANGGHFIAHESDIFDEAEATNSKRENGPNG VIALIPLIVSILIINVKVNGKAIVPIEVGVFIGALLVYLLLNKYQDNTKIVGHVGDACKTTVVAICNTCAVVAFGSVVKS AVGFDFIVNAMTNIPGPPIAGAAVGTTVIAGICGSASGGLGIAAPLLGPVFLAKGVSAAALTRTMAISSAALDSLPHNGY IVTVTNGLCKETHKDAYMPIFWVTVLTPFIGTIVAVLLFTMFPGLP
Specific function: Unknown
COG id: COG2610
COG function: function code GE; H+/gluconate symporter and related permeases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CitM (TC 2.A.11) transporter family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004680 [H]
Pfam domain/function: PF03600 CitMHS [H]
EC number: NA
Molecular weight: Translated: 46327; Mature: 46327
Theoretical pI: Translated: 8.31; Mature: 8.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTGVIISLVGIIIALSLLVVMVMKGINIFIIAIVCSSLVAITGSLNVYDALKVDYMTGF CCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH VGFLQANFFIFLTGTLMGKIMEITGGAKSIAKMIVRWIGKDKALLSIPIACGILAYGGVS HHHHHHCHHEEEHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHCHHH VFVVSFAVFPIALEIFKEADLPRRFIPAALTFGCSTFAMVAPGAPQIQNIVPASTLGTDI HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHEEECCCCCHHHHCCCCHHHHHHH MAGAVNGFISCAVMFIVGSTILYKMVSKEKANGGHFIAHESDIFDEAEATNSKRENGPNG HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCC VIALIPLIVSILIINVKVNGKAIVPIEVGVFIGALLVYLLLNKYQDNTKIVGHVGDACKT HHHHHHHHHHHHHEEEEECCEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHH TVVAICNTCAVVAFGSVVKSAVGFDFIVNAMTNIPGPPIAGAAVGTTVIAGICGSASGGL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCC GIAAPLLGPVFLAKGVSAAALTRTMAISSAALDSLPHNGYIVTVTNGLCKETHKDAYMPI CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHCCCCCCHH FWVTVLTPFIGTIVAVLLFTMFPGLP HHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MNTGVIISLVGIIIALSLLVVMVMKGINIFIIAIVCSSLVAITGSLNVYDALKVDYMTGF CCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH VGFLQANFFIFLTGTLMGKIMEITGGAKSIAKMIVRWIGKDKALLSIPIACGILAYGGVS HHHHHHCHHEEEHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHCHHH VFVVSFAVFPIALEIFKEADLPRRFIPAALTFGCSTFAMVAPGAPQIQNIVPASTLGTDI HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHEEECCCCCHHHHCCCCHHHHHHH MAGAVNGFISCAVMFIVGSTILYKMVSKEKANGGHFIAHESDIFDEAEATNSKRENGPNG HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCC VIALIPLIVSILIINVKVNGKAIVPIEVGVFIGALLVYLLLNKYQDNTKIVGHVGDACKT HHHHHHHHHHHHHEEEEECCEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHH TVVAICNTCAVVAFGSVVKSAVGFDFIVNAMTNIPGPPIAGAAVGTTVIAGICGSASGGL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCC GIAAPLLGPVFLAKGVSAAALTRTMAISSAALDSLPHNGYIVTVTNGLCKETHKDAYMPI CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHCCCCCCHH FWVTVLTPFIGTIVAVLLFTMFPGLP HHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8969509; 9384377; 10568751 [H]