| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126698366
Identifier: 126698366
GI number: 126698366
Start: 959381
End: 960028
Strand: Direct
Name: 126698366
Synonym: CD0786
Alternate gene names: NA
Gene position: 959381-960028 (Clockwise)
Preceding gene: 126698365
Following gene: 126698368
Centisome position: 22.36
GC content: 20.68
Gene sequence:
>648_bases ATGAAAAAGTTTCTAAATGTACTTTTTTCAATTTGTATTAGTATTGTTATAATAGTAGGTGTTATTAATTTTACTGTTGG ATTTAAACAACTTTATTATTTTGACATTGATTACTTAAATATATCAGAGTTATCTGGTTTATCTAAAGATGATATAAAAT TGAACTACGATTATCTAATTGATTATAACTTAAATAAGAATGTGTCTGAGTTCAAATTACCAACATTAAAATCTTCTCCA CAAGGGAAGATACATTTTGAAGAAGTCAGGAATATATTTCAAAATATAAATAAATTAGCTAAATTATTATTGGTAGTTTC TTTAGTAGGAATTATATTGAGTGTAAAAAATAAAAATATAAAAATCTTAAAAACTACATCAATAACACTTATAATTATGC CATTATTATTAACAGTTCCAATTTTATTAAATTTTGAAAAGTCATTTATTATTTTTCATAAATTATTATTTAGAAATGAT TATTGGATATTTAATCCCGATTTAGACCCAGTTATAAATATATTGCCAGAGGAATTTTTTTTTCACTCTGGAATGATGAT TTTAATATTAATTTTGTTAGTAAGTATAGTACTGTTTGTAATGTATAAATTATGTAAATCTTTATCAATAAAAATATTTC AATGTTAA
Upstream 100 bases:
>100_bases GAGCCAGAATTTTATTCAGAAATTGTTGATGATGTATGGAATATAGAAGATTTTACAACTAAAATCGTGTAGTGATTTAA CTTATTGCTGGGGGGATTTC
Downstream 100 bases:
>100_bases ATAGAGGGATATTTTTATTTCCAAAATAAGATAATAAAAAAGGATTAGATTAAAAGTTATACAATAAAAATAGCTGTGCA ATAATATTTAGACTATGAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 215; Mature: 215
Protein sequence:
>215_residues MKKFLNVLFSICISIVIIVGVINFTVGFKQLYYFDIDYLNISELSGLSKDDIKLNYDYLIDYNLNKNVSEFKLPTLKSSP QGKIHFEEVRNIFQNINKLAKLLLVVSLVGIILSVKNKNIKILKTTSITLIIMPLLLTVPILLNFEKSFIIFHKLLFRND YWIFNPDLDPVINILPEEFFFHSGMMILILILLVSIVLFVMYKLCKSLSIKIFQC
Sequences:
>Translated_215_residues MKKFLNVLFSICISIVIIVGVINFTVGFKQLYYFDIDYLNISELSGLSKDDIKLNYDYLIDYNLNKNVSEFKLPTLKSSP QGKIHFEEVRNIFQNINKLAKLLLVVSLVGIILSVKNKNIKILKTTSITLIIMPLLLTVPILLNFEKSFIIFHKLLFRND YWIFNPDLDPVINILPEEFFFHSGMMILILILLVSIVLFVMYKLCKSLSIKIFQC >Mature_215_residues MKKFLNVLFSICISIVIIVGVINFTVGFKQLYYFDIDYLNISELSGLSKDDIKLNYDYLIDYNLNKNVSEFKLPTLKSSP QGKIHFEEVRNIFQNINKLAKLLLVVSLVGIILSVKNKNIKILKTTSITLIIMPLLLTVPILLNFEKSFIIFHKLLFRND YWIFNPDLDPVINILPEEFFFHSGMMILILILLVSIVLFVMYKLCKSLSIKIFQC
Specific function: Unknown
COG id: COG4478
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24951; Mature: 24951
Theoretical pI: Translated: 9.47; Mature: 9.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKFLNVLFSICISIVIIVGVINFTVGFKQLYYFDIDYLNISELSGLSKDDIKLNYDYLI CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHCCCCCCCEEEEEEEEE DYNLNKNVSEFKLPTLKSSPQGKIHFEEVRNIFQNINKLAKLLLVVSLVGIILSVKNKNI EECCCCCHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE KILKTTSITLIIMPLLLTVPILLNFEKSFIIFHKLLFRNDYWIFNPDLDPVINILPEEFF EEEEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHH FHSGMMILILILLVSIVLFVMYKLCKSLSIKIFQC HHCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECC >Mature Secondary Structure MKKFLNVLFSICISIVIIVGVINFTVGFKQLYYFDIDYLNISELSGLSKDDIKLNYDYLI CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHCCCCCCCEEEEEEEEE DYNLNKNVSEFKLPTLKSSPQGKIHFEEVRNIFQNINKLAKLLLVVSLVGIILSVKNKNI EECCCCCHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE KILKTTSITLIIMPLLLTVPILLNFEKSFIIFHKLLFRNDYWIFNPDLDPVINILPEEFF EEEEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHH FHSGMMILILILLVSIVLFVMYKLCKSLSIKIFQC HHCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA