| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
Click here to switch to the map view.
The map label for this gene is 126698357
Identifier: 126698357
GI number: 126698357
Start: 947930
End: 948772
Strand: Direct
Name: 126698357
Synonym: CD0777
Alternate gene names: NA
Gene position: 947930-948772 (Clockwise)
Preceding gene: 126698356
Following gene: 126698358
Centisome position: 22.09
GC content: 33.81
Gene sequence:
>843_bases ATGAAAGAAAAAGCAGGGATTAGAAATGCCATAATAGCAGCCTTTATAATCACAATATTGGCAGAATTAATTGGACCTAT TTCATTTAAAGTTATGGGAATTAATGTAACTTTACTTAGTATACTATGGGCTATATTCATAGGAATGGCTGTTTCTCCTC ATTTATTAGGGAGAGTTATACCAGCCTTAAAAAAGTTTATAGGGGATAATGAAATAAATGTATCTCCATATTTATTATCT TTGACACTATATCCATTAGGGATAATGTTTGGAATTAATGCAGGACCTAAAGTTGGTATATTACTTCAAGCAGGACCAGC ACTTTTATTACAAGAATTTGGTCATATGGGTACAATGTTGATAGCATTGCCTGTTGGAGTAGCATTAGGTCTTGGAAGAA GTGCATTAGGTGGTACTTTTTCATTATGTCGTGACACAGCACTAGGAATTATTGGAGATAAGTATGGATTAAACTCACCA GAAGGTATAGGAACACTAGGAACTTACATAAGTGGTAGTATATTTGGAACATTATTATTTTCATTTTTAGCACCAGTGGG TGTACTTTTAGGATTTCATCCATATGCTTTAGCAATGGCATCAGGAATGGGTAGTGGTTCAATGATGGGAGCTGCAACAG CATCATTAATGAATACGGTTCCACAAATGTCAGAGCAGATTTTAGCATATTCAGCTACTAGTGGATTGATTACAGCTGTT ACTGGAATATATATAGAATTATTCTTATCTTTACCAGTAGCCAACTACTATTATAGCAAAGTAGCTCCAGTTATTGAAAG ATTTAGAGGAAGAAAAACAAGAAGAACAAGTAATAAATTGTAA
Upstream 100 bases:
>100_bases GAATAAATATATATTATACATTATCAATGATAGGTTATATAATAAAATCACTAACAATTATATTATAAGAAAATTATAAA AATTACAAGGAGGTATAGAA
Downstream 100 bases:
>100_bases AGGAGGATATATATATGGAAAAAACTTTTAAGACTATTATGGAGCAGATAAAAATAGTATTGTTTATATATATTATTATT TGCTTTGGACAAATGATAGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 280; Mature: 280
Protein sequence:
>280_residues MKEKAGIRNAIIAAFIITILAELIGPISFKVMGINVTLLSILWAIFIGMAVSPHLLGRVIPALKKFIGDNEINVSPYLLS LTLYPLGIMFGINAGPKVGILLQAGPALLLQEFGHMGTMLIALPVGVALGLGRSALGGTFSLCRDTALGIIGDKYGLNSP EGIGTLGTYISGSIFGTLLFSFLAPVGVLLGFHPYALAMASGMGSGSMMGAATASLMNTVPQMSEQILAYSATSGLITAV TGIYIELFLSLPVANYYYSKVAPVIERFRGRKTRRTSNKL
Sequences:
>Translated_280_residues MKEKAGIRNAIIAAFIITILAELIGPISFKVMGINVTLLSILWAIFIGMAVSPHLLGRVIPALKKFIGDNEINVSPYLLS LTLYPLGIMFGINAGPKVGILLQAGPALLLQEFGHMGTMLIALPVGVALGLGRSALGGTFSLCRDTALGIIGDKYGLNSP EGIGTLGTYISGSIFGTLLFSFLAPVGVLLGFHPYALAMASGMGSGSMMGAATASLMNTVPQMSEQILAYSATSGLITAV TGIYIELFLSLPVANYYYSKVAPVIERFRGRKTRRTSNKL >Mature_280_residues MKEKAGIRNAIIAAFIITILAELIGPISFKVMGINVTLLSILWAIFIGMAVSPHLLGRVIPALKKFIGDNEINVSPYLLS LTLYPLGIMFGINAGPKVGILLQAGPALLLQEFGHMGTMLIALPVGVALGLGRSALGGTFSLCRDTALGIIGDKYGLNSP EGIGTLGTYISGSIFGTLLFSFLAPVGVLLGFHPYALAMASGMGSGSMMGAATASLMNTVPQMSEQILAYSATSGLITAV TGIYIELFLSLPVANYYYSKVAPVIERFRGRKTRRTSNKL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29461; Mature: 29461
Theoretical pI: Translated: 10.03; Mature: 10.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKEKAGIRNAIIAAFIITILAELIGPISFKVMGINVTLLSILWAIFIGMAVSPHLLGRVI CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHH PALKKFIGDNEINVSPYLLSLTLYPLGIMFGINAGPKVGILLQAGPALLLQEFGHMGTML HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHCCHHHHH IALPVGVALGLGRSALGGTFSLCRDTALGIIGDKYGLNSPEGIGTLGTYISGSIFGTLLF HHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH SFLAPVGVLLGFHPYALAMASGMGSGSMMGAATASLMNTVPQMSEQILAYSATSGLITAV HHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH TGIYIELFLSLPVANYYYSKVAPVIERFRGRKTRRTSNKL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCC >Mature Secondary Structure MKEKAGIRNAIIAAFIITILAELIGPISFKVMGINVTLLSILWAIFIGMAVSPHLLGRVI CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHH PALKKFIGDNEINVSPYLLSLTLYPLGIMFGINAGPKVGILLQAGPALLLQEFGHMGTML HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHCCHHHHH IALPVGVALGLGRSALGGTFSLCRDTALGIIGDKYGLNSPEGIGTLGTYISGSIFGTLLF HHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH SFLAPVGVLLGFHPYALAMASGMGSGSMMGAATASLMNTVPQMSEQILAYSATSGLITAV HHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH TGIYIELFLSLPVANYYYSKVAPVIERFRGRKTRRTSNKL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA