| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is glnP [H]
Identifier: 126698331
GI number: 126698331
Start: 918638
End: 919315
Strand: Direct
Name: glnP [H]
Synonym: CD0751
Alternate gene names: 126698331
Gene position: 918638-919315 (Clockwise)
Preceding gene: 126698330
Following gene: 126698332
Centisome position: 21.41
GC content: 30.38
Gene sequence:
>678_bases ATGAGTTTAGATTTTAGTTTTTTAAGTAGATTTGGGACTTCTTTTTTGGAAGGAACAGGTGTGACAGTATCAATTTCTCT TGTGGCATTATGCTTTGGATTTATAATAGGTATAATTATCTGTATGGCAAAAATATCAAAGAGCAAAGTATTAAGAGCAA TATCATCAATCTATATTGAGGTTTTAAGAGGGACACCATTATTAGTACAGATATATATAGTATGGTTTGGTTTACCTCAA TTAGGAATAAGATTCCCTATGTTGTTTGGTATACCAAGTGAATTTATAGCTAGTGCATTTGCATTATCAGTAAACTCTGG TGCATACGTGGCAGAGATACTTAGATCAGGTATACAATCAGTTGATAATGGACAAATGGAAGCAAGTAGATCATTAGGAT TAAATTATTGGTCAACTATGAGATATATAATAATACCTCAAGCTATAAAAAATATATTACCTTCATTAGCAAATGAGTTT ATTACACTTGTAAAAGAATCTTCAATAATATCTGTAATAGGAGTTGTTGAGATAATGCGTACTGCTGATATAGTAAAAAA TGCAGCATTTAGAGCATTAGAGCCATTAATAGTAGCAGCAGCAATTTACTTTGTTATAACATTTACTCTATCAAGATTAG TTGGATTATTAGAAAAGAAACTATCTGTGTCTAACTAG
Upstream 100 bases:
>100_bases AAAAGAATTACAAGATGGCAAGAAGATAGAAGAATTTTTAAATGAAGCATCTACTGAAGCTGCTTCAAATTAGTAAGAAA GTTATGTGGGAGATGAAATT
Downstream 100 bases:
>100_bases ATGAGAGCATGTTTAGCATTTAGGGAAAACATAGAATAGTAAAAAGGAAAGTGATAATATGATTACAATAAAAAATTTAA GTAAATCTTTTGGAGATTTA
Product: amino acid ABC transporter permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 225; Mature: 224
Protein sequence:
>225_residues MSLDFSFLSRFGTSFLEGTGVTVSISLVALCFGFIIGIIICMAKISKSKVLRAISSIYIEVLRGTPLLVQIYIVWFGLPQ LGIRFPMLFGIPSEFIASAFALSVNSGAYVAEILRSGIQSVDNGQMEASRSLGLNYWSTMRYIIIPQAIKNILPSLANEF ITLVKESSIISVIGVVEIMRTADIVKNAAFRALEPLIVAAAIYFVITFTLSRLVGLLEKKLSVSN
Sequences:
>Translated_225_residues MSLDFSFLSRFGTSFLEGTGVTVSISLVALCFGFIIGIIICMAKISKSKVLRAISSIYIEVLRGTPLLVQIYIVWFGLPQ LGIRFPMLFGIPSEFIASAFALSVNSGAYVAEILRSGIQSVDNGQMEASRSLGLNYWSTMRYIIIPQAIKNILPSLANEF ITLVKESSIISVIGVVEIMRTADIVKNAAFRALEPLIVAAAIYFVITFTLSRLVGLLEKKLSVSN >Mature_224_residues SLDFSFLSRFGTSFLEGTGVTVSISLVALCFGFIIGIIICMAKISKSKVLRAISSIYIEVLRGTPLLVQIYIVWFGLPQL GIRFPMLFGIPSEFIASAFALSVNSGAYVAEILRSGIQSVDNGQMEASRSLGLNYWSTMRYIIIPQAIKNILPSLANEFI TLVKESSIISVIGVVEIMRTADIVKNAAFRALEPLIVAAAIYFVITFTLSRLVGLLEKKLSVSN
Specific function: Part of the binding-protein-dependent transport system for glutamine; probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG0765
COG function: function code E; ABC-type amino acid transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1788226, Length=207, Percent_Identity=38.1642512077295, Blast_Score=154, Evalue=4e-39, Organism=Escherichia coli, GI1787030, Length=223, Percent_Identity=35.4260089686099, Blast_Score=139, Evalue=1e-34, Organism=Escherichia coli, GI1786873, Length=208, Percent_Identity=29.8076923076923, Blast_Score=105, Evalue=2e-24, Organism=Escherichia coli, GI87082239, Length=225, Percent_Identity=30.6666666666667, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI48994930, Length=187, Percent_Identity=35.2941176470588, Blast_Score=97, Evalue=7e-22, Organism=Escherichia coli, GI1786874, Length=239, Percent_Identity=28.0334728033473, Blast_Score=95, Evalue=4e-21, Organism=Escherichia coli, GI1788645, Length=207, Percent_Identity=26.0869565217391, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1787086, Length=212, Percent_Identity=27.8301886792453, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1787087, Length=210, Percent_Identity=29.0476190476191, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1788646, Length=230, Percent_Identity=24.7826086956522, Blast_Score=79, Evalue=3e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010065 - InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 24557; Mature: 24425
Theoretical pI: Translated: 9.67; Mature: 9.67
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLDFSFLSRFGTSFLEGTGVTVSISLVALCFGFIIGIIICMAKISKSKVLRAISSIYIE CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLRGTPLLVQIYIVWFGLPQLGIRFPMLFGIPSEFIASAFALSVNSGAYVAEILRSGIQS HHCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH VDNGQMEASRSLGLNYWSTMRYIIIPQAIKNILPSLANEFITLVKESSIISVIGVVEIMR CCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TADIVKNAAFRALEPLIVAAAIYFVITFTLSRLVGLLEKKLSVSN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SLDFSFLSRFGTSFLEGTGVTVSISLVALCFGFIIGIIICMAKISKSKVLRAISSIYIE CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLRGTPLLVQIYIVWFGLPQLGIRFPMLFGIPSEFIASAFALSVNSGAYVAEILRSGIQS HHCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH VDNGQMEASRSLGLNYWSTMRYIIIPQAIKNILPSLANEFITLVKESSIISVIGVVEIMR CCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TADIVKNAAFRALEPLIVAAAIYFVITFTLSRLVGLLEKKLSVSN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA