Click here to switch to the map view.

The map label for this gene is yjcD [H]

Identifier: 126698329

GI number: 126698329

Start: 914910

End: 916976

Strand: Direct

Name: yjcD [H]

Synonym: CD0749

Alternate gene names: 126698329

Gene position: 914910-916976 (Clockwise)

Preceding gene: 126698328

Following gene: 126698330

Centisome position: 21.33

GC content: 27.19

Gene sequence:

>2067_bases
GTGGTGGAGCTAATAATCACAACAAATATAGATATAAGAAAGTTAAATGAAAATCAATTAGAAGCAGTTGAGCATATAGA
TGGGCCTTGCATGATACTTGCAGGGCCTGGTTCAGGTAAGACCAGAGTAATTACATATAGAATAGCCAATATGGTTGTAA
ACAAAAACATAGCACCAACAAGAATCTTGGCAATAAGTTTTACCAAGGCATCTTCAATAGAAATGAAAAATAGAGCTTTG
AATTTAAGTGATGACATAAGACTTAATAAGGTAACCTATGGTACTTTTCACTCTGTATTTTTTAAAATTCTAAGATACTT
TGAAAGATACAACTTAGACAGTATATTTGATGAAAAGTCAAAGCGAATGACAATCAAGGCAATCCTAAAAAGTTTAAATA
TAGAGAATGCTGATGATGATGAGAATATAGGACAAGTTATAAATGAAATTTCCTATGTAAAAAATGAACTTATGGATAAA
AATGAATTTAATTCAGAAGTATTAACAAAAGATGAGTTTTTAAAAGTATACAACTTATACGAAGAACAAAAATCTAAAGT
TAATAAAATAGATTTTGATGATATGCTTATAAGAACTTATTATTTACTTTTGAACAATAAGTCTGCACTAGAAATGGTTA
GAAATGTGTATAAATATATATTGATAGATGAATTTCAAGATATAAATAAAGTACAGTTTGAAGTTTTAAAGTTAATTTGT
AGCCCATTAAACAATATATTTGCAGTTGGAGATGAGGACCAAAGTATATATGGATTTAGAGGTGCTAGACCAGATTTTTT
GCTTGAATTTGAACAATACTTTAATAATACTAAAAAAATAATATTAGATATAAATTACAGGTCTAAAAGTGAGATAGTTC
ATACTGCAAATAGACTTATTGACAAAAATAAAAATAGATATGAAAAAATCATTAAGTGTAGTCAGGGGGATGGAGGAAGT
GTTACCTATATTTCTCCGCATGATTCAGAGGAAGAAGCCTTATATATTGCCAGGGAAATAATTGACGAAATACAAAAAGA
TTATGTAGAGTATTCAGATTTTGCAGTAATTTATAGAACTAATATACAGTCAAGAGCATTAGTAGATGTATTTATGGATA
TGAGGATTCCATTTGTAGTAAAAGACTCAGTAATTACAATATATGACCATTGGGCAAGTCAAGATATACTAGCCTATTTA
AGAATAGGTATTAATCCAAAATCAAATAAAGATTGGTTGAGAATTATAAACAAGCCTTTTAGATATATATCCAAAGACAG
TATAAATATGGTTAAGGATGAAAAAGACTTTATAACAGCATTAATAAATAAGTGTAATCTTCATCCTAAACAAGTTAAAA
CAATAAATGATTTGGAAATAGATTTAAGTTATTTAAATACTTTAAATCCTAAAAATGCAATATCTTATATTAGAACTAGT
CTTGATTATGATAGATATGTTTTAGATTATTGTAGCAACAGAAAGATAAAGACTAATGGACTTGTAGAGATATTAAATGA
ACTTGAGAGTTCAGCAACTAATTTTAATACTGTTACAGAGTTTTTAGAGCATATTGATAGAGTAAAGACTGAGTTAACGG
AAAATAACAAGAATAAGCAGACTGAGGGTGTCATATTTACAACTATGCATAGTGCAAAAGGATTAGAATTTAGAAATGTT
TATATTATAGGTGTAAATGAAGGAACAATACCTCATGAAAAATCATATGATATTTGTAAGGAAGAGAAAAAAGAAGAACA
ATTAGAAGAAGAAAGAAGACTTATGTATGTTGCTATTACAAGAGCTGAAGAAAAGTTATGTATAAGCTCTACTTTAAATA
AGTATGGTAAGAAAGTTGATAAATCATTATTTATTAATGATATAAAATCTCCAACGAAAAAAGAAATTGACAGTATTGAT
GTAGGGGATAAGGTATACCATAAAAAATTTCATGAAGGAGAAATAATTAAAAAAGATGGAATTATGTTTACAATAAAGTT
TAAAGATAGAGAGCGAATCTTGGATTTGAAAACTTGTTTATTGAAGAATATAATTTATACTATTTAA

Upstream 100 bases:

>100_bases
GAAAATAGGAATGATGTGGTTTAATAGAGGAAAAATTAAATTTATTTTTATGAACTTTTAGTTTATAATTAAAAAGAAAA
TAATATAATTATAAATCAAG

Downstream 100 bases:

>100_bases
TTTAGAATCTAAATTTAGATAGAAATATAATGTATTATTTATTATGTGCAAGACAAATAGATATGTGTAAAATGTATTAT
TTAACTTATTAGAAAAAGAA

Product: ATP-dependent DNA helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 688; Mature: 688

Protein sequence:

>688_residues
MVELIITTNIDIRKLNENQLEAVEHIDGPCMILAGPGSGKTRVITYRIANMVVNKNIAPTRILAISFTKASSIEMKNRAL
NLSDDIRLNKVTYGTFHSVFFKILRYFERYNLDSIFDEKSKRMTIKAILKSLNIENADDDENIGQVINEISYVKNELMDK
NEFNSEVLTKDEFLKVYNLYEEQKSKVNKIDFDDMLIRTYYLLLNNKSALEMVRNVYKYILIDEFQDINKVQFEVLKLIC
SPLNNIFAVGDEDQSIYGFRGARPDFLLEFEQYFNNTKKIILDINYRSKSEIVHTANRLIDKNKNRYEKIIKCSQGDGGS
VTYISPHDSEEEALYIAREIIDEIQKDYVEYSDFAVIYRTNIQSRALVDVFMDMRIPFVVKDSVITIYDHWASQDILAYL
RIGINPKSNKDWLRIINKPFRYISKDSINMVKDEKDFITALINKCNLHPKQVKTINDLEIDLSYLNTLNPKNAISYIRTS
LDYDRYVLDYCSNRKIKTNGLVEILNELESSATNFNTVTEFLEHIDRVKTELTENNKNKQTEGVIFTTMHSAKGLEFRNV
YIIGVNEGTIPHEKSYDICKEEKKEEQLEEERRLMYVAITRAEEKLCISSTLNKYGKKVDKSLFINDIKSPTKKEIDSID
VGDKVYHKKFHEGEIIKKDGIMFTIKFKDRERILDLKTCLLKNIIYTI

Sequences:

>Translated_688_residues
MVELIITTNIDIRKLNENQLEAVEHIDGPCMILAGPGSGKTRVITYRIANMVVNKNIAPTRILAISFTKASSIEMKNRAL
NLSDDIRLNKVTYGTFHSVFFKILRYFERYNLDSIFDEKSKRMTIKAILKSLNIENADDDENIGQVINEISYVKNELMDK
NEFNSEVLTKDEFLKVYNLYEEQKSKVNKIDFDDMLIRTYYLLLNNKSALEMVRNVYKYILIDEFQDINKVQFEVLKLIC
SPLNNIFAVGDEDQSIYGFRGARPDFLLEFEQYFNNTKKIILDINYRSKSEIVHTANRLIDKNKNRYEKIIKCSQGDGGS
VTYISPHDSEEEALYIAREIIDEIQKDYVEYSDFAVIYRTNIQSRALVDVFMDMRIPFVVKDSVITIYDHWASQDILAYL
RIGINPKSNKDWLRIINKPFRYISKDSINMVKDEKDFITALINKCNLHPKQVKTINDLEIDLSYLNTLNPKNAISYIRTS
LDYDRYVLDYCSNRKIKTNGLVEILNELESSATNFNTVTEFLEHIDRVKTELTENNKNKQTEGVIFTTMHSAKGLEFRNV
YIIGVNEGTIPHEKSYDICKEEKKEEQLEEERRLMYVAITRAEEKLCISSTLNKYGKKVDKSLFINDIKSPTKKEIDSID
VGDKVYHKKFHEGEIIKKDGIMFTIKFKDRERILDLKTCLLKNIIYTI
>Mature_688_residues
MVELIITTNIDIRKLNENQLEAVEHIDGPCMILAGPGSGKTRVITYRIANMVVNKNIAPTRILAISFTKASSIEMKNRAL
NLSDDIRLNKVTYGTFHSVFFKILRYFERYNLDSIFDEKSKRMTIKAILKSLNIENADDDENIGQVINEISYVKNELMDK
NEFNSEVLTKDEFLKVYNLYEEQKSKVNKIDFDDMLIRTYYLLLNNKSALEMVRNVYKYILIDEFQDINKVQFEVLKLIC
SPLNNIFAVGDEDQSIYGFRGARPDFLLEFEQYFNNTKKIILDINYRSKSEIVHTANRLIDKNKNRYEKIIKCSQGDGGS
VTYISPHDSEEEALYIAREIIDEIQKDYVEYSDFAVIYRTNIQSRALVDVFMDMRIPFVVKDSVITIYDHWASQDILAYL
RIGINPKSNKDWLRIINKPFRYISKDSINMVKDEKDFITALINKCNLHPKQVKTINDLEIDLSYLNTLNPKNAISYIRTS
LDYDRYVLDYCSNRKIKTNGLVEILNELESSATNFNTVTEFLEHIDRVKTELTENNKNKQTEGVIFTTMHSAKGLEFRNV
YIIGVNEGTIPHEKSYDICKEEKKEEQLEEERRLMYVAITRAEEKLCISSTLNKYGKKVDKSLFINDIKSPTKKEIDSID
VGDKVYHKKFHEGEIIKKDGIMFTIKFKDRERILDLKTCLLKNIIYTI

Specific function: May be involved in the generation of recombinogenic substrates for the subsequent action of recA [H]

COG id: COG0210

COG function: function code L; Superfamily I DNA and RNA helicases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 uvrD-like helicase C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI48994965, Length=625, Percent_Identity=30.72, Blast_Score=280, Evalue=2e-76,
Organism=Escherichia coli, GI2367296, Length=701, Percent_Identity=28.3880171184023, Blast_Score=273, Evalue=4e-74,
Organism=Escherichia coli, GI1787196, Length=140, Percent_Identity=30.7142857142857, Blast_Score=70, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6322369, Length=427, Percent_Identity=27.8688524590164, Blast_Score=130, Evalue=6e-31,
Organism=Saccharomyces cerevisiae, GI6324477, Length=671, Percent_Identity=23.9940387481371, Blast_Score=84, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014017
- InterPro:   IPR000212
- InterPro:   IPR014016 [H]

Pfam domain/function: PF00580 UvrD-helicase [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 80289; Mature: 80289

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVELIITTNIDIRKLNENQLEAVEHIDGPCMILAGPGSGKTRVITYRIANMVVNKNIAPT
CEEEEEECCCEEEECCCHHHHHHHHCCCCEEEEECCCCCCEEEEEEEEEHHHHCCCCCCE
RILAISFTKASSIEMKNRALNLSDDIRLNKVTYGTFHSVFFKILRYFERYNLDSIFDEKS
EEEEEEECCCCCCCHHHCEECCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCHHHHHHHH
KRMTIKAILKSLNIENADDDENIGQVINEISYVKNELMDKNEFNSEVLTKDEFLKVYNLY
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHCCHHHHHHHHHHH
EEQKSKVNKIDFDDMLIRTYYLLLNNKSALEMVRNVYKYILIDEFQDINKVQFEVLKLIC
HHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SPLNNIFAVGDEDQSIYGFRGARPDFLLEFEQYFNNTKKIILDINYRSKSEIVHTANRLI
HHHHHEEEECCCCCCEECCCCCCCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHH
DKNKNRYEKIIKCSQGDGGSVTYISPHDSEEEALYIAREIIDEIQKDYVEYSDFAVIYRT
HCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEC
NIQSRALVDVFMDMRIPFVVKDSVITIYDHWASQDILAYLRIGINPKSNKDWLRIINKPF
CCCHHHHHHHHHHCCCCEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCHHHHHHHHHHH
RYISKDSINMVKDEKDFITALINKCNLHPKQVKTINDLEIDLSYLNTLNPKNAISYIRTS
HHHCCCCCHHHCCHHHHHHHHHHHCCCCHHHHCCCCCCEEEHHHHHCCCHHHHHHHHHHH
LDYDRYVLDYCSNRKIKTNGLVEILNELESSATNFNTVTEFLEHIDRVKTELTENNKNKQ
CCHHHHHHHHHCCCEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
TEGVIFTTMHSAKGLEFRNVYIIGVNEGTIPHEKSYDICKEEKKEEQLEEERRLMYVAIT
CCCEEEEEECCCCCCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCEEEEEEE
RAEEKLCISSTLNKYGKKVDKSLFINDIKSPTKKEIDSIDVGDKVYHKKFHEGEIIKKDG
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHCCCCCEEEECC
IMFTIKFKDRERILDLKTCLLKNIIYTI
EEEEEEECCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVELIITTNIDIRKLNENQLEAVEHIDGPCMILAGPGSGKTRVITYRIANMVVNKNIAPT
CEEEEEECCCEEEECCCHHHHHHHHCCCCEEEEECCCCCCEEEEEEEEEHHHHCCCCCCE
RILAISFTKASSIEMKNRALNLSDDIRLNKVTYGTFHSVFFKILRYFERYNLDSIFDEKS
EEEEEEECCCCCCCHHHCEECCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCHHHHHHHH
KRMTIKAILKSLNIENADDDENIGQVINEISYVKNELMDKNEFNSEVLTKDEFLKVYNLY
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHCCHHHHHHHHHHH
EEQKSKVNKIDFDDMLIRTYYLLLNNKSALEMVRNVYKYILIDEFQDINKVQFEVLKLIC
HHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SPLNNIFAVGDEDQSIYGFRGARPDFLLEFEQYFNNTKKIILDINYRSKSEIVHTANRLI
HHHHHEEEECCCCCCEECCCCCCCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHH
DKNKNRYEKIIKCSQGDGGSVTYISPHDSEEEALYIAREIIDEIQKDYVEYSDFAVIYRT
HCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEC
NIQSRALVDVFMDMRIPFVVKDSVITIYDHWASQDILAYLRIGINPKSNKDWLRIINKPF
CCCHHHHHHHHHHCCCCEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCHHHHHHHHHHH
RYISKDSINMVKDEKDFITALINKCNLHPKQVKTINDLEIDLSYLNTLNPKNAISYIRTS
HHHCCCCCHHHCCHHHHHHHHHHHCCCCHHHHCCCCCCEEEHHHHHCCCHHHHHHHHHHH
LDYDRYVLDYCSNRKIKTNGLVEILNELESSATNFNTVTEFLEHIDRVKTELTENNKNKQ
CCHHHHHHHHHCCCEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
TEGVIFTTMHSAKGLEFRNVYIIGVNEGTIPHEKSYDICKEEKKEEQLEEERRLMYVAIT
CCCEEEEEECCCCCCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCEEEEEEE
RAEEKLCISSTLNKYGKKVDKSLFINDIKSPTKKEIDSIDVGDKVYHKKFHEGEIIKKDG
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHCCCCCEEEECC
IMFTIKFKDRERILDLKTCLLKNIIYTI
EEEEEEECCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]