| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is yvrG [H]
Identifier: 126698248
GI number: 126698248
Start: 810391
End: 811797
Strand: Direct
Name: yvrG [H]
Synonym: CD0669
Alternate gene names: 126698248
Gene position: 810391-811797 (Clockwise)
Preceding gene: 126698247
Following gene: 126698249
Centisome position: 18.89
GC content: 28.78
Gene sequence:
>1407_bases TTGGATAGTGTAAAGTACATATTGAGGCGATTTATAGGTTCAAGTATCTTGATTTCATTACTTTTTATTGTATTAAATAT AGCAGGTTTTCTTCTGTTTTCATATATGTTATTTGTATCTAAATACTCTGATAATTTAGATACAAGTGATAGCAGAGAAA TAAAATCAAACTTGATTATGATTGAAGATAATTTGGTTTTAAAAGATGGAAAGTTTATTTTAGATGATTCTAGTAAGGAA GTGCTACATAAAAATAAAGTTTGGGCAATGTTAATTGATAACAATGGAGATAGAATATGGGGATTTGATTTACCAAAAGA AATTCCAAGTCATTATACTTTGACAGATGTAGCAAAGTTTTCAAGGTTCTTTTTAAAGGACTATCCTGTGTATGTATGGG AACATCCAAATGGAATATTAGTAACAGGTTATCCAAAAGACAAGTACACTAAGTTTAACCTTACTTATACGGTTAAGGAA ATAGAACAATTTCCTATGTTAATAATAGGTATGTTTCTGGTTAATGCAATAGTTACTTTTTTAATAGCTCTATTCATAGG TTTAAAAATGGTGAAATCTATAAAGCCAATTATTACTGGCATAAAGCTTATGTCAAAAGGAGAACCAGTACTTTTACAAG AAAAAGGAATACTAAGTGATATTTCAAAATCTATTAATACTGTATCTAAAGAGTTGCAAATGAAAGATGAAAAACTTAGG AAGAAAGAGGAAGCTAGGTCTAACTGGATTGCAGGAATATCTCATGATATAAGAACTCCACTTTCAATGATAATTGGATA TGCTGGAGAACTTGAAGAAAGCAGTAGCCTTTCAAATAGAGAACAAGAGCAAGTGTCTATTATATGCAATCAAGGGATTA AAATCAGAGAATTAGTAAATGACCTAAATTTAGTGTCTAAACTTGAATATAATATGCAAGCATTGAATTGTGATAAGATT AGAGTTTCTGCGTTTTTGAGAGAGCTTATTTCTGAGTTTATAAATAATAATTTGGATAATGACTTTTACGTTGAACTTGA TATACTAAATGAAGATATTATTATAGATGCAGATAAAAAATTATTAAAAAGGGCTATTAGTAATTTAATACAAAATAGTA TAACTCATAACCAACAAGGATGTAATATAAGGGTTACCTCTAAGTCTGATTTAGATTTTTGCTATATAATTGTTGAAGAT GATGGAAAAGGTATGAGTCAAGAAAGAATTAATAGTTTATTAAAGAGCCAAAATGGACTAAGTGAGGCATATGCCAAAGG TCAAAATCATGGTCTAGGTATTTTGATAGTATCTGGCATTATTAATGCACATAGAGGTAAATTAGATATTACGAGCATTG ATAGTCAGGGACTAAAAACAATACTAAAATTACCTCTAATTAAGTGA
Upstream 100 bases:
>100_bases CACCTAAACATCTTATTACAGTAAGAGGTCTTGGATATAAGTTGATGATTAATTAATTTTAGATATTAGAATAAAAGAAA TCAAGAGGAGTGATTTAATT
Downstream 100 bases:
>100_bases TATTTTATAAAATAATAACAGATAAGAATGAAGAATGAAAATATTTTGAAAATAATTTTATTCTTTATTGACAAATTAAC TCTATTAGAGTAGAATAAGG
Product: two-component sensor histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 468; Mature: 468
Protein sequence:
>468_residues MDSVKYILRRFIGSSILISLLFIVLNIAGFLLFSYMLFVSKYSDNLDTSDSREIKSNLIMIEDNLVLKDGKFILDDSSKE VLHKNKVWAMLIDNNGDRIWGFDLPKEIPSHYTLTDVAKFSRFFLKDYPVYVWEHPNGILVTGYPKDKYTKFNLTYTVKE IEQFPMLIIGMFLVNAIVTFLIALFIGLKMVKSIKPIITGIKLMSKGEPVLLQEKGILSDISKSINTVSKELQMKDEKLR KKEEARSNWIAGISHDIRTPLSMIIGYAGELEESSSLSNREQEQVSIICNQGIKIRELVNDLNLVSKLEYNMQALNCDKI RVSAFLRELISEFINNNLDNDFYVELDILNEDIIIDADKKLLKRAISNLIQNSITHNQQGCNIRVTSKSDLDFCYIIVED DGKGMSQERINSLLKSQNGLSEAYAKGQNHGLGILIVSGIINAHRGKLDITSIDSQGLKTILKLPLIK
Sequences:
>Translated_468_residues MDSVKYILRRFIGSSILISLLFIVLNIAGFLLFSYMLFVSKYSDNLDTSDSREIKSNLIMIEDNLVLKDGKFILDDSSKE VLHKNKVWAMLIDNNGDRIWGFDLPKEIPSHYTLTDVAKFSRFFLKDYPVYVWEHPNGILVTGYPKDKYTKFNLTYTVKE IEQFPMLIIGMFLVNAIVTFLIALFIGLKMVKSIKPIITGIKLMSKGEPVLLQEKGILSDISKSINTVSKELQMKDEKLR KKEEARSNWIAGISHDIRTPLSMIIGYAGELEESSSLSNREQEQVSIICNQGIKIRELVNDLNLVSKLEYNMQALNCDKI RVSAFLRELISEFINNNLDNDFYVELDILNEDIIIDADKKLLKRAISNLIQNSITHNQQGCNIRVTSKSDLDFCYIIVED DGKGMSQERINSLLKSQNGLSEAYAKGQNHGLGILIVSGIINAHRGKLDITSIDSQGLKTILKLPLIK >Mature_468_residues MDSVKYILRRFIGSSILISLLFIVLNIAGFLLFSYMLFVSKYSDNLDTSDSREIKSNLIMIEDNLVLKDGKFILDDSSKE VLHKNKVWAMLIDNNGDRIWGFDLPKEIPSHYTLTDVAKFSRFFLKDYPVYVWEHPNGILVTGYPKDKYTKFNLTYTVKE IEQFPMLIIGMFLVNAIVTFLIALFIGLKMVKSIKPIITGIKLMSKGEPVLLQEKGILSDISKSINTVSKELQMKDEKLR KKEEARSNWIAGISHDIRTPLSMIIGYAGELEESSSLSNREQEQVSIICNQGIKIRELVNDLNLVSKLEYNMQALNCDKI RVSAFLRELISEFINNNLDNDFYVELDILNEDIIIDADKKLLKRAISNLIQNSITHNQQGCNIRVTSKSDLDFCYIIVED DGKGMSQERINSLLKSQNGLSEAYAKGQNHGLGILIVSGIINAHRGKLDITSIDSQGLKTILKLPLIK
Specific function: Member of the two-component regulatory system YvrG/YvrH that positively regulates 7 transcriptional units (wprA, wapA- yxxG, dltABCDE, sunA, sunT-bdbA-yolJ-bdbB, sigO-rsoA, and sigX- rsiX), and negatively regulates the lytABC operon. Probably activates yv
COG id: COG0642
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
Organism=Escherichia coli, GI1786600, Length=230, Percent_Identity=26.9565217391304, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1786783, Length=340, Percent_Identity=25.2941176470588, Blast_Score=80, Evalue=3e-16, Organism=Escherichia coli, GI1790436, Length=240, Percent_Identity=24.5833333333333, Blast_Score=73, Evalue=4e-14, Organism=Escherichia coli, GI1788713, Length=241, Percent_Identity=24.896265560166, Blast_Score=69, Evalue=7e-13, Organism=Escherichia coli, GI1788549, Length=246, Percent_Identity=25.609756097561, Blast_Score=66, Evalue=4e-12, Organism=Escherichia coli, GI145693157, Length=258, Percent_Identity=22.093023255814, Blast_Score=65, Evalue=7e-12, Organism=Escherichia coli, GI1790861, Length=294, Percent_Identity=23.8095238095238, Blast_Score=62, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 53131; Mature: 53131
Theoretical pI: Translated: 7.18; Mature: 7.18
Prosite motif: PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDSVKYILRRFIGSSILISLLFIVLNIAGFLLFSYMLFVSKYSDNLDTSDSREIKSNLIM CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCEEE IEDNLVLKDGKFILDDSSKEVLHKNKVWAMLIDNNGDRIWGFDLPKEIPSHYTLTDVAKF EECCEEEECCCEEECCCCHHHHHCCCEEEEEEECCCCEEECCCCHHHCCCCCCHHHHHHH SRFFLKDYPVYVWEHPNGILVTGYPKDKYTKFNLTYTVKEIEQFPMLIIGMFLVNAIVTF HHHHHHCCCEEEEECCCEEEEECCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH LIALFIGLKMVKSIKPIITGIKLMSKGEPVLLQEKGILSDISKSINTVSKELQMKDEKLR HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH KKEEARSNWIAGISHDIRTPLSMIIGYAGELEESSSLSNREQEQVSIICNQGIKIRELVN HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHH DLNLVSKLEYNMQALNCDKIRVSAFLRELISEFINNNLDNDFYVELDILNEDIIIDADKK HHHHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCEEEECCHH LLKRAISNLIQNSITHNQQGCNIRVTSKSDLDFCYIIVEDDGKGMSQERINSLLKSQNGL HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCH SEAYAKGQNHGLGILIVSGIINAHRGKLDITSIDSQGLKTILKLPLIK HHHHHCCCCCCEEEEEEEHHHHHCCCEEEEECCCHHHHHHHHHCCCCC >Mature Secondary Structure MDSVKYILRRFIGSSILISLLFIVLNIAGFLLFSYMLFVSKYSDNLDTSDSREIKSNLIM CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCEEE IEDNLVLKDGKFILDDSSKEVLHKNKVWAMLIDNNGDRIWGFDLPKEIPSHYTLTDVAKF EECCEEEECCCEEECCCCHHHHHCCCEEEEEEECCCCEEECCCCHHHCCCCCCHHHHHHH SRFFLKDYPVYVWEHPNGILVTGYPKDKYTKFNLTYTVKEIEQFPMLIIGMFLVNAIVTF HHHHHHCCCEEEEECCCEEEEECCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH LIALFIGLKMVKSIKPIITGIKLMSKGEPVLLQEKGILSDISKSINTVSKELQMKDEKLR HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH KKEEARSNWIAGISHDIRTPLSMIIGYAGELEESSSLSNREQEQVSIICNQGIKIRELVN HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHH DLNLVSKLEYNMQALNCDKIRVSAFLRELISEFINNNLDNDFYVELDILNEDIIIDADKK HHHHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCEEEECCHH LLKRAISNLIQNSITHNQQGCNIRVTSKSDLDFCYIIVEDDGKGMSQERINSLLKSQNGL HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCH SEAYAKGQNHGLGILIVSGIINAHRGKLDITSIDSQGLKTILKLPLIK HHHHHCCCCCCEEEEEEEHHHHHCCCEEEEECCCHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9639930; 9384377 [H]