| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126698202
Identifier: 126698202
GI number: 126698202
Start: 745796
End: 747049
Strand: Direct
Name: 126698202
Synonym: CD0625
Alternate gene names: NA
Gene position: 745796-747049 (Clockwise)
Preceding gene: 126698201
Following gene: 126698203
Centisome position: 17.38
GC content: 27.19
Gene sequence:
>1254_bases ATGGGGGAAATAGAGATGAATAAGGGATTTTACAAATTAAATTCAATGGTATTGAACTTTGATATTAAGAATGATGTTAA CAAGATAAGATTTAATCATTATATAATGAGAAAAGAAAACATACAAAGACTTCAAGGAACTCTGCCAAACGGACAATTTT ATATGACAGTGAGAAGAGCTGCTACAGATTTACAACTTTCTATTTCTACTATAAGTAGGCTTGTAAAAGAGTTTTTGGAT TTAGGGATAATAAGATTAGTGTCTAAGGGTGTAAAAGGTAATCGTTCTGTATATAGTTACGTAAGTATAGAGTTTAATGG AAGTTTATTTGATGATAGTAAATATATGGAACTTGACTGTGTATGTAATGATGAATTTATTGATAATAGTGGCATAGAGT TTGATTGTGATAGCAAAGATAATTCTTTTAATGGAGATATAAATGTAGAAACTGTGCATTGCATTAATGAGTATTTCTCT GATGATGATGTAGAGCATAATTATAACAATTTCCATAACAAAGATACTATAAAGGATAAAGCCATTTCTAATATTAGCAC TATCAAAAAATATATTGATGAATCTTTTGATACAAATAAATCAGAAAATTCTAACTTACAACAGGAGTCAATAAATTTCA ACTTTAATGATACATGCAATGAAATAGATAAAAGAACGAATAATAGTATAGAAAATAATCAAAATAAAAGGCCTATGAGA TTGAGTGACATCAGTGTTTTAAGTGATAAAGGTATGACAAATAAAAAGAATTACTTTAATCATAATCATGGTATACAAAA AGGGACTAAATCTGTAACAAAGAAAAAAGAATCCTTAAATAAATTTAATAAAAAAAATATACAGCAAAGCATTATAAATA TGCTAAATAAAAAATCAGGTAAGAATTTTAAAATCGATTCTCCAATAAGCATAAAACTTATCAATGAAAGGCTAAAGGAA GGCTATGTCTTAGAAGATTTCTACAAAGTTATTGAGGTAAAAGTGGCTAAGTGGAAAAATACCATAATGGAAATGTATAT AAGACCAGAAACTTTGTTTAGCTATAAGTTTGAATCCTATGTAAATGAAAACATATCTATGAAAAGTCAAAGTAATGTTC ACCCATGTAAAGAAGGCAATAGTAATGATAGCAGTAATTATATACATTCTGATTATACAACATATGATGGCAGTGTGCGT GAGAGAAAAAAATATGAGAATGTAAGATACTGGAATCCTATATGTGAAATTTAA
Upstream 100 bases:
>100_bases TTAAATTAGGAAATATTAAAAAAATATATATATTTATATTTAAACTATTTTGTTATTTATATAAAAATACTTATCTAGTT ACTAGCAATTATTAGTAGAA
Downstream 100 bases:
>100_bases TTAGTTTAAGAATGTATTTATGATAAATAAGATATTAATAGAGAATAGTGAGCTATAGCAAATGATATATCAATAATTGG TAGTAAGTTATATTAAGTAA
Product: phage-related regulatory protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 417; Mature: 416
Protein sequence:
>417_residues MGEIEMNKGFYKLNSMVLNFDIKNDVNKIRFNHYIMRKENIQRLQGTLPNGQFYMTVRRAATDLQLSISTISRLVKEFLD LGIIRLVSKGVKGNRSVYSYVSIEFNGSLFDDSKYMELDCVCNDEFIDNSGIEFDCDSKDNSFNGDINVETVHCINEYFS DDDVEHNYNNFHNKDTIKDKAISNISTIKKYIDESFDTNKSENSNLQQESINFNFNDTCNEIDKRTNNSIENNQNKRPMR LSDISVLSDKGMTNKKNYFNHNHGIQKGTKSVTKKKESLNKFNKKNIQQSIINMLNKKSGKNFKIDSPISIKLINERLKE GYVLEDFYKVIEVKVAKWKNTIMEMYIRPETLFSYKFESYVNENISMKSQSNVHPCKEGNSNDSSNYIHSDYTTYDGSVR ERKKYENVRYWNPICEI
Sequences:
>Translated_417_residues MGEIEMNKGFYKLNSMVLNFDIKNDVNKIRFNHYIMRKENIQRLQGTLPNGQFYMTVRRAATDLQLSISTISRLVKEFLD LGIIRLVSKGVKGNRSVYSYVSIEFNGSLFDDSKYMELDCVCNDEFIDNSGIEFDCDSKDNSFNGDINVETVHCINEYFS DDDVEHNYNNFHNKDTIKDKAISNISTIKKYIDESFDTNKSENSNLQQESINFNFNDTCNEIDKRTNNSIENNQNKRPMR LSDISVLSDKGMTNKKNYFNHNHGIQKGTKSVTKKKESLNKFNKKNIQQSIINMLNKKSGKNFKIDSPISIKLINERLKE GYVLEDFYKVIEVKVAKWKNTIMEMYIRPETLFSYKFESYVNENISMKSQSNVHPCKEGNSNDSSNYIHSDYTTYDGSVR ERKKYENVRYWNPICEI >Mature_416_residues GEIEMNKGFYKLNSMVLNFDIKNDVNKIRFNHYIMRKENIQRLQGTLPNGQFYMTVRRAATDLQLSISTISRLVKEFLDL GIIRLVSKGVKGNRSVYSYVSIEFNGSLFDDSKYMELDCVCNDEFIDNSGIEFDCDSKDNSFNGDINVETVHCINEYFSD DDVEHNYNNFHNKDTIKDKAISNISTIKKYIDESFDTNKSENSNLQQESINFNFNDTCNEIDKRTNNSIENNQNKRPMRL SDISVLSDKGMTNKKNYFNHNHGIQKGTKSVTKKKESLNKFNKKNIQQSIINMLNKKSGKNFKIDSPISIKLINERLKEG YVLEDFYKVIEVKVAKWKNTIMEMYIRPETLFSYKFESYVNENISMKSQSNVHPCKEGNSNDSSNYIHSDYTTYDGSVRE RKKYENVRYWNPICEI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48712; Mature: 48581
Theoretical pI: Translated: 8.03; Mature: 8.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGEIEMNKGFYKLNSMVLNFDIKNDVNKIRFNHYIMRKENIQRLQGTLPNGQFYMTVRRA CCCCCCCCCEEEEEEEEEEEECCCCHHHHHHHHEEECHHHHHHHHCCCCCCEEEEEEECC ATDLQLSISTISRLVKEFLDLGIIRLVSKGVKGNRSVYSYVSIEFNGSLFDDSKYMELDC CCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCEECCCCEEEEEE VCNDEFIDNSGIEFDCDSKDNSFNGDINVETVHCINEYFSDDDVEHNYNNFHNKDTIKDK EECCCEECCCCCEEECCCCCCCCCCCEEEEEHHHHHHHCCCCCCCCCCCCCCCCCHHHHH AISNISTIKKYIDESFDTNKSENSNLQQESINFNFNDTCNEIDKRTNNSIENNQNKRPMR HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCEE LSDISVLSDKGMTNKKNYFNHNHGIQKGTKSVTKKKESLNKFNKKNIQQSIINMLNKKSG ECCHHHHHCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC KNFKIDSPISIKLINERLKEGYVLEDFYKVIEVKVAKWKNTIMEMYIRPETLFSYKFESY CCEECCCCCEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH VNENISMKSQSNVHPCKEGNSNDSSNYIHSDYTTYDGSVRERKKYENVRYWNPICEI HCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHCCCCCCCHHCCC >Mature Secondary Structure GEIEMNKGFYKLNSMVLNFDIKNDVNKIRFNHYIMRKENIQRLQGTLPNGQFYMTVRRA CCCCCCCCEEEEEEEEEEEECCCCHHHHHHHHEEECHHHHHHHHCCCCCCEEEEEEECC ATDLQLSISTISRLVKEFLDLGIIRLVSKGVKGNRSVYSYVSIEFNGSLFDDSKYMELDC CCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCEECCCCEEEEEE VCNDEFIDNSGIEFDCDSKDNSFNGDINVETVHCINEYFSDDDVEHNYNNFHNKDTIKDK EECCCEECCCCCEEECCCCCCCCCCCEEEEEHHHHHHHCCCCCCCCCCCCCCCCCHHHHH AISNISTIKKYIDESFDTNKSENSNLQQESINFNFNDTCNEIDKRTNNSIENNQNKRPMR HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCEE LSDISVLSDKGMTNKKNYFNHNHGIQKGTKSVTKKKESLNKFNKKNIQQSIINMLNKKSG ECCHHHHHCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC KNFKIDSPISIKLINERLKEGYVLEDFYKVIEVKVAKWKNTIMEMYIRPETLFSYKFESY CCEECCCCCEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH VNENISMKSQSNVHPCKEGNSNDSSNYIHSDYTTYDGSVRERKKYENVRYWNPICEI HCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHCCCCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA