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The map label for this gene is ybdM [H]

Identifier: 126698173

GI number: 126698173

Start: 719777

End: 720313

Strand: Direct

Name: ybdM [H]

Synonym: CD0595

Alternate gene names: 126698173

Gene position: 719777-720313 (Clockwise)

Preceding gene: 126698172

Following gene: 126698174

Centisome position: 16.78

GC content: 31.84

Gene sequence:

>537_bases
ATGGAATATAAAAGTCCTGTATATGGAATCATCGCAGTGCCAATCGAAAAGATAGAATCTAACGACTATAATCCAAATGC
AGTAGCCCCACCAGAAATGCAGTTGTTGTATAAAAGTATAAAAGAAGATGGGTATACAATGCCAATTGTCTGTTATTATA
ATGAGGAAAAGGATAAGTATATTATTGTAGATGGTTTTCATAGATATAGAGTAATGCTTGAAAATGAGGATATATATGAT
AGAGAAAATGGACTTCTTCCTGTTTCAGTAATTGATAAATCTCTTGATGAAAGAATGGCAAGTACTATTCGACACAATCG
TGCAAGAGGTTCTCATAATGTGGATTTAATGAGTAAAATTATAACTGAACTTTGTGAAATTGGAAAATCTGATGAATGGA
TATCAAAGCACCTGGGTATGGAAGTTGATGAAATTCTTAGATTGAAGCAAATAACTGGATTAGCTTATTTATTTAAAGAT
AAAGAGTTTGGTAATGCATGGATTCCCTTTGGCTCTGATATAGAAGAAGAAAATTAA

Upstream 100 bases:

>100_bases
GTAGATTTATGGGATTTGGTCCTACAAAAGAACAGAGAATTAGAACGGAATATATTAAGAAGAAATATGAAAAAATTCAT
TAGATAGGAGTTAAGATGCT

Downstream 100 bases:

>100_bases
ATAGATTTATTAAAAGAAAAAGATTTATTAAAAAAGAAAATTTAAAATATATATTAAAAAATAAAGAGTTTTAATATTAT
ATGTAAGTACAGAAAAAAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MEYKSPVYGIIAVPIEKIESNDYNPNAVAPPEMQLLYKSIKEDGYTMPIVCYYNEEKDKYIIVDGFHRYRVMLENEDIYD
RENGLLPVSVIDKSLDERMASTIRHNRARGSHNVDLMSKIITELCEIGKSDEWISKHLGMEVDEILRLKQITGLAYLFKD
KEFGNAWIPFGSDIEEEN

Sequences:

>Translated_178_residues
MEYKSPVYGIIAVPIEKIESNDYNPNAVAPPEMQLLYKSIKEDGYTMPIVCYYNEEKDKYIIVDGFHRYRVMLENEDIYD
RENGLLPVSVIDKSLDERMASTIRHNRARGSHNVDLMSKIITELCEIGKSDEWISKHLGMEVDEILRLKQITGLAYLFKD
KEFGNAWIPFGSDIEEEN
>Mature_178_residues
MEYKSPVYGIIAVPIEKIESNDYNPNAVAPPEMQLLYKSIKEDGYTMPIVCYYNEEKDKYIIVDGFHRYRVMLENEDIYD
RENGLLPVSVIDKSLDERMASTIRHNRARGSHNVDLMSKIITELCEIGKSDEWISKHLGMEVDEILRLKQITGLAYLFKD
KEFGNAWIPFGSDIEEEN

Specific function: Unknown

COG id: COG1475

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786817, Length=162, Percent_Identity=47.5308641975309, Blast_Score=158, Evalue=2e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003115 [H]

Pfam domain/function: PF02195 ParBc [H]

EC number: NA

Molecular weight: Translated: 20659; Mature: 20659

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYKSPVYGIIAVPIEKIESNDYNPNAVAPPEMQLLYKSIKEDGYTMPIVCYYNEEKDKY
CCCCCCEEEEEEEEHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCE
IIVDGFHRYRVMLENEDIYDRENGLLPVSVIDKSLDERMASTIRHNRARGSHNVDLMSKI
EEEECCEEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
ITELCEIGKSDEWISKHLGMEVDEILRLKQITGLAYLFKDKEFGNAWIPFGSDIEEEN
HHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHEEEECCCCCCEECCCCCCCCCCC
>Mature Secondary Structure
MEYKSPVYGIIAVPIEKIESNDYNPNAVAPPEMQLLYKSIKEDGYTMPIVCYYNEEKDKY
CCCCCCEEEEEEEEHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCE
IIVDGFHRYRVMLENEDIYDRENGLLPVSVIDKSLDERMASTIRHNRARGSHNVDLMSKI
EEEECCEEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
ITELCEIGKSDEWISKHLGMEVDEILRLKQITGLAYLFKDKEFGNAWIPFGSDIEEEN
HHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHEEEECCCCCCEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]