| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126698151
Identifier: 126698151
GI number: 126698151
Start: 681844
End: 682446
Strand: Direct
Name: 126698151
Synonym: CD0573
Alternate gene names: NA
Gene position: 681844-682446 (Clockwise)
Preceding gene: 126698150
Following gene: 126698152
Centisome position: 15.89
GC content: 27.69
Gene sequence:
>603_bases ATGGATAATTTAATTAGGATACTGATATTAGCTGTTATTGGTGGATTTATAGGTTATGTTACGAATGTAGTTGCTATAAG ACTGATATTTAGACCAATAGAGCCTATTAAAATACCTATTTTAAATATAGAAATAGTAGGTCTTATACCAAAGAGAAGAG CAGAAATAGCAGCAAATGTAGGAGAAATAATTCAAGAAGAATTTCTTTCTATGGACGAAATACTTGCAAATATCATTACT GACGAAGATAAGGAAGAAGTTGTAAGATACATAAAAGCAAGGGTAAAAATTATAATACATGAGAAAGTTTCATTTATCCC GAGTGGTATAAAAAACATGATACAAGATTATCTAGGAGAGATAATTGAGTCTGAAGTTAAGCAAAGTATAGATGAATTGA GTAAAAATATAATAAATAAAGCAAATGAACGTATAGATATACAAAAAATGGTCGAAGATAAGATTAATGAACTAGATTTA TATGAATTGGAAGAGATAATAATAAGAATAGCTAAGAAAGAATTAAAACATATAGAGTTTTTGGGGCTTGTCTTAGGGTT TTTAATAGGTATAGCTCAAGGGTTAATTACTATGTTTATTTAA
Upstream 100 bases:
>100_bases TAAAGCTATAGTATAACTAGAGTTATTAAGTATAAAGAATATCTACTTGATTAATGCAATATAGCTGGCAAATATACAAT TGATAAGGAGTAATTTTATA
Downstream 100 bases:
>100_bases ATATATGAGAAGTAGCATTTATTTAAGTACTAATTATATTTACCTATTTGAGTGAATTACTTATTAATAACATTTAGATA TTAATTGTATTTACCTATTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 200; Mature: 200
Protein sequence:
>200_residues MDNLIRILILAVIGGFIGYVTNVVAIRLIFRPIEPIKIPILNIEIVGLIPKRRAEIAANVGEIIQEEFLSMDEILANIIT DEDKEEVVRYIKARVKIIIHEKVSFIPSGIKNMIQDYLGEIIESEVKQSIDELSKNIINKANERIDIQKMVEDKINELDL YELEEIIIRIAKKELKHIEFLGLVLGFLIGIAQGLITMFI
Sequences:
>Translated_200_residues MDNLIRILILAVIGGFIGYVTNVVAIRLIFRPIEPIKIPILNIEIVGLIPKRRAEIAANVGEIIQEEFLSMDEILANIIT DEDKEEVVRYIKARVKIIIHEKVSFIPSGIKNMIQDYLGEIIESEVKQSIDELSKNIINKANERIDIQKMVEDKINELDL YELEEIIIRIAKKELKHIEFLGLVLGFLIGIAQGLITMFI >Mature_200_residues MDNLIRILILAVIGGFIGYVTNVVAIRLIFRPIEPIKIPILNIEIVGLIPKRRAEIAANVGEIIQEEFLSMDEILANIIT DEDKEEVVRYIKARVKIIIHEKVSFIPSGIKNMIQDYLGEIIESEVKQSIDELSKNIINKANERIDIQKMVEDKINELDL YELEEIIIRIAKKELKHIEFLGLVLGFLIGIAQGLITMFI
Specific function: Unknown
COG id: COG4399
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0754 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007383 - InterPro: IPR016991 [H]
Pfam domain/function: PF04286 DUF445 [H]
EC number: NA
Molecular weight: Translated: 22815; Mature: 22815
Theoretical pI: Translated: 4.69; Mature: 4.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDNLIRILILAVIGGFIGYVTNVVAIRLIFRPIEPIKIPILNIEIVGLIPKRRAEIAANV CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCHHHHHHHHHH GEIIQEEFLSMDEILANIITDEDKEEVVRYIKARVKIIIHEKVSFIPSGIKNMIQDYLGE HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IIESEVKQSIDELSKNIINKANERIDIQKMVEDKINELDLYELEEIIIRIAKKELKHIEF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH LGLVLGFLIGIAQGLITMFI HHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MDNLIRILILAVIGGFIGYVTNVVAIRLIFRPIEPIKIPILNIEIVGLIPKRRAEIAANV CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCHHHHHHHHHH GEIIQEEFLSMDEILANIITDEDKEEVVRYIKARVKIIIHEKVSFIPSGIKNMIQDYLGE HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IIESEVKQSIDELSKNIINKANERIDIQKMVEDKINELDLYELEEIIIRIAKKELKHIEF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH LGLVLGFLIGIAQGLITMFI HHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11679669 [H]