| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126698122
Identifier: 126698122
GI number: 126698122
Start: 648088
End: 648951
Strand: Direct
Name: 126698122
Synonym: CD0543
Alternate gene names: NA
Gene position: 648088-648951 (Clockwise)
Preceding gene: 126698121
Following gene: 126698123
Centisome position: 15.11
GC content: 25.46
Gene sequence:
>864_bases ATGAAATTTTTTAAAGTCGATACAAAAGCTAAAGTTTTAAGATATGTATTTGTTTTAACATTGACTATAATGGTTGTTTT GGCAATTAAACATGACTATAAATATAATAATTTAAGGAAAGATGCTTCAATTAATTTAAATAGTAATAAGGAAGCAGTGA CTGTTATGAGTAACCAGTCATTACCAAAGGGTAATACAAATAGTAAACAAACTTTATCAGTAAGTACAATAGGAAGTAAA ACAATAGTGAAAAATGATGAGTATTTAGAAAGTACTATAAACATGCCTGTAATAACAAATTCAAATAAAATTGTTGAAAG GTCTACAAATGATAAGATAAAAAATGACATATTTGAATTTTATAATAAATCATATAAAGAAGCAAAGCAGTATCTTAAGG ATAATCCTGACGAGAAAAATAAGTTTGTTGCAAATGTAGACTTTGAACTTAAAAAGAATACTGATTCTGCTCTTAGTATA AAAGTGAGATATTATACTTATAGTGGTGGAGCACATGGATTTTATCAAGATATAGCATATAATGTGGATATGAGAACTGG AAAATTTTTAGAATTAATGGACTTGTTTAAGGATAATACTAAATATAAAGAAGTTATAGATGAAGAAATTAAAAGACAAA TAGCTGAACTTGAAAAAAAGGATGAAGAAAATATAGGAATATATAATTTTAAAGGTATAAAAGAGAATCAAAACTTTTAC TTGCAAGATGAGAATCTAGTTGTATATTTTGATTTATATGATATAACTCCATATGCAGCAGGGATACCAGAATTTTCAAT AAATAAAGCGTTGATAAGTTCTATGCTAAAACCAGAGTATGTAGATTTATTTGATTTGAAATAG
Upstream 100 bases:
>100_bases TATAAATAAAAATTAATCTTTTATTAAATTATATGGATAAAAAACCCTAGAAACTCCAAATATAATAAGAGAGATTTATA TTTAGGAGGAAAATGATAAT
Downstream 100 bases:
>100_bases AAGATTAAATTAAATGTTATGCTATAATATTTAGCATAGAGACTTATTAAAATTGGGGGTATAAAAATGCTACTTTTAAA AAAAGACGACATAAAAAAAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 287; Mature: 287
Protein sequence:
>287_residues MKFFKVDTKAKVLRYVFVLTLTIMVVLAIKHDYKYNNLRKDASINLNSNKEAVTVMSNQSLPKGNTNSKQTLSVSTIGSK TIVKNDEYLESTINMPVITNSNKIVERSTNDKIKNDIFEFYNKSYKEAKQYLKDNPDEKNKFVANVDFELKKNTDSALSI KVRYYTYSGGAHGFYQDIAYNVDMRTGKFLELMDLFKDNTKYKEVIDEEIKRQIAELEKKDEENIGIYNFKGIKENQNFY LQDENLVVYFDLYDITPYAAGIPEFSINKALISSMLKPEYVDLFDLK
Sequences:
>Translated_287_residues MKFFKVDTKAKVLRYVFVLTLTIMVVLAIKHDYKYNNLRKDASINLNSNKEAVTVMSNQSLPKGNTNSKQTLSVSTIGSK TIVKNDEYLESTINMPVITNSNKIVERSTNDKIKNDIFEFYNKSYKEAKQYLKDNPDEKNKFVANVDFELKKNTDSALSI KVRYYTYSGGAHGFYQDIAYNVDMRTGKFLELMDLFKDNTKYKEVIDEEIKRQIAELEKKDEENIGIYNFKGIKENQNFY LQDENLVVYFDLYDITPYAAGIPEFSINKALISSMLKPEYVDLFDLK >Mature_287_residues MKFFKVDTKAKVLRYVFVLTLTIMVVLAIKHDYKYNNLRKDASINLNSNKEAVTVMSNQSLPKGNTNSKQTLSVSTIGSK TIVKNDEYLESTINMPVITNSNKIVERSTNDKIKNDIFEFYNKSYKEAKQYLKDNPDEKNKFVANVDFELKKNTDSALSI KVRYYTYSGGAHGFYQDIAYNVDMRTGKFLELMDLFKDNTKYKEVIDEEIKRQIAELEKKDEENIGIYNFKGIKENQNFY LQDENLVVYFDLYDITPYAAGIPEFSINKALISSMLKPEYVDLFDLK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33327; Mature: 33327
Theoretical pI: Translated: 8.47; Mature: 8.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFFKVDTKAKVLRYVFVLTLTIMVVLAIKHDYKYNNLRKDASINLNSNKEAVTVMSNQS CCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCEEEEEECCC LPKGNTNSKQTLSVSTIGSKTIVKNDEYLESTINMPVITNSNKIVERSTNDKIKNDIFEF CCCCCCCCCEEEEEEECCCEEEECCCHHHHHHCCCCEEECCCCEEECCCCCHHHHHHHHH YNKSYKEAKQYLKDNPDEKNKFVANVDFELKKNTDSALSIKVRYYTYSGGAHGFYQDIAY HHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCHHHHHEE NVDMRTGKFLELMDLFKDNTKYKEVIDEEIKRQIAELEKKDEENIGIYNFKGIKENQNFY ECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCEE LQDENLVVYFDLYDITPYAAGIPEFSINKALISSMLKPEYVDLFDLK EECCCEEEEEEEEECCHHHCCCCCCHHHHHHHHHHCCCCCCEEECCC >Mature Secondary Structure MKFFKVDTKAKVLRYVFVLTLTIMVVLAIKHDYKYNNLRKDASINLNSNKEAVTVMSNQS CCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCEEEEEECCC LPKGNTNSKQTLSVSTIGSKTIVKNDEYLESTINMPVITNSNKIVERSTNDKIKNDIFEF CCCCCCCCCEEEEEEECCCEEEECCCHHHHHHCCCCEEECCCCEEECCCCCHHHHHHHHH YNKSYKEAKQYLKDNPDEKNKFVANVDFELKKNTDSALSIKVRYYTYSGGAHGFYQDIAY HHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCHHHHHEE NVDMRTGKFLELMDLFKDNTKYKEVIDEEIKRQIAELEKKDEENIGIYNFKGIKENQNFY ECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCEE LQDENLVVYFDLYDITPYAAGIPEFSINKALISSMLKPEYVDLFDLK EECCCEEEEEEEEECCHHHCCCCCCHHHHHHHHHHCCCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA