| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is yolJ [H]
Identifier: 126697811
GI number: 126697811
Start: 301908
End: 304049
Strand: Direct
Name: yolJ [H]
Synonym: CD0240
Alternate gene names: 126697811
Gene position: 301908-304049 (Clockwise)
Preceding gene: 126697810
Following gene: 126697812
Centisome position: 7.04
GC content: 23.44
Gene sequence:
>2142_bases ATGTTACTTAGTATAGTTATGATGGTCAAAAACGAAGAAAATATACTTGAAAAAACTTTAAAATCGTTATCAGTATTGAG AAATTCAATAGAGAGTGAACTTATAATAGTTGATACAGGTTCTACAGATAATACTATAAGAATAGCAAAACAATATACAG AAAAGGTATATTTTCATAATTGGAATGATGATTTTTCTAGTATGAGAAATATATCTATATCCTACGCTAAGGGCGAATGG TTACTTATATTAGATGCAGATGAAGTATTAATTGATTATTCAAATATTATAAAGTTTTTTGAAAGTGGTCTTAATAAAAA ATTTAACTCTGCCTCAGTACGACTAAAAAATCTTTATTCATTTGATAAAAAATTATATGGATATTGTTCAGTGTTGAGAT TTTTCAAAAACCTTGATTTTAAATACTGTGGGAAAGTTCATGAACAACCAATGTATAAAAATCCTATATTTAATAATATT GCTGATTTTGAACATTATGGATATTTGTTTGAAGATGAAGAGATAAGAATAAATAAAGTAAAAAGAAATGAAAAACTGTT ACTTGAGGAATTAAAAGAAGACGAGAAATCTCCATATACAAATTATCAAATAGGGAAAAATCTTATTATATTAGGAAAAT ATCAAGAAGCTTTAGATTATCTAGAAAAGTCTTATAAATTATACTCAAAATTAGAAATAGTACCTGGATACTTGATAACA AACCTTGCAAAAGTATATTTATACTTAGGAAAGGCTAAGAAGTGTGAAAAATTATGCTTAAAATATATTAATAAGGACAG AAATAATATTGATATATATTATCATATTGCACAAGCACAAGTTGATTTAGGGAAGTATGAAAATAGTATAGATTCATATA AAAGATATATTTATTTGCTAGATAATTATGAAATGAGTACGCAAGCAAATAGTTTGCTTTCAGATACTGATGCTGTAGGA TTTAGAGATGAAGCTATAATTACATTGATAAAAATTTATTATAAGCTTGAGAAATATGATTTAGTAATTTCAGAGTATGA TAATATTGAAGATGTGGAAAAAAAGAAAAATGTGTACTTTAGCTTATTTATGTCTTTATATAAATTAAATAGATTTGAAG ACATAAAAAACTATTATAGAGAGATTCCAAATTCGAAGGTTGAGAGAGATAGTTTTTATAAAAGTATGGAAGACTTTATA AATAATATAAAAGATGATGAGAAAGAGCTCATATATAAAAGCCTTTGTGATATTGAAGGTAATTATGGTCTTTTGAATAA AATAAGAATAAACAAACATGTATCATTAGATACATGTAGAAAAATACTAAATGAAGAAAAAGACATAGTTTATGCAAGTG TTATAAAAATAGCTTTTGAGGAAAAAGTTGACTTATTAGACATTTTTTACAATATGGAATATGTTTGGATAGAGAAATAC TTAAGGTATATTTTAGCTTTAGAAAGAAGTTTTAATGTATCAATATATAAATATATAATTAGTTGTCCTAATACATCAGA AATAGAAAAGATAAGAGTGTACAAAGTTATATCTAAAATTCTTTTAGAAAGTGTTAATTTAAGTGATAAAAAATACAAAG AACTTTTTTATATTTATATAATGTACTCTTATAAATACATAAAATACATATATAGCAATTTGAGTGATTGTGAATTAATA AAGTTTGTTTGTAATGACATAGATAAGTTCACTTTAGAATTTAAGCATGTACTTGATGGTAAAAGGAAGATAAATAATCC TAATGAAAAATTAGAATATCTACATAATATGAGAATATTATTAAATGAATACCCTTTTTACAATAGAATAATAAAAATCT TCATAAGTGAATTAGAAGAAAGTATAACAGAAAGTGAAGAATTTAAATTATTAAAAGATAACTTTATTATTCGTATAGAA AATATGATTGAGAATGGAAAAATAAATGATGCAAAGTTATTGATTGAAGACTACTCAAAAACATTTGCAGATGATGTAAA GATTTTAAATATAAAGGCAATTTTGTTTATGTGTGAAGATAAATTTGAAGAAGCTGATTTTGCATTAAAAAAGGCATTAT CACTAGACTTAGAAAATGAGGATACTATATATAATATAGAGTACTTAGAAAATTTAAAATAA
Upstream 100 bases:
>100_bases AGGATAGAATAAATTTAGTATATTGAATAAAAAAGAAAGGATAAGGCTTTGCTTTATTCTTTTCTTTTTTTAGAAATATA GTTTTGAAAGGAAAATATAT
Downstream 100 bases:
>100_bases ATTTAAAACTAGGTTATTTAGAAAATAATAATATCAATAACAGTTAATGAAAAATATAATAGAAGATTGAATATATACAT ATAAAAATACTGATGTAAAA
Product: glycosyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 713; Mature: 713
Protein sequence:
>713_residues MLLSIVMMVKNEENILEKTLKSLSVLRNSIESELIIVDTGSTDNTIRIAKQYTEKVYFHNWNDDFSSMRNISISYAKGEW LLILDADEVLIDYSNIIKFFESGLNKKFNSASVRLKNLYSFDKKLYGYCSVLRFFKNLDFKYCGKVHEQPMYKNPIFNNI ADFEHYGYLFEDEEIRINKVKRNEKLLLEELKEDEKSPYTNYQIGKNLIILGKYQEALDYLEKSYKLYSKLEIVPGYLIT NLAKVYLYLGKAKKCEKLCLKYINKDRNNIDIYYHIAQAQVDLGKYENSIDSYKRYIYLLDNYEMSTQANSLLSDTDAVG FRDEAIITLIKIYYKLEKYDLVISEYDNIEDVEKKKNVYFSLFMSLYKLNRFEDIKNYYREIPNSKVERDSFYKSMEDFI NNIKDDEKELIYKSLCDIEGNYGLLNKIRINKHVSLDTCRKILNEEKDIVYASVIKIAFEEKVDLLDIFYNMEYVWIEKY LRYILALERSFNVSIYKYIISCPNTSEIEKIRVYKVISKILLESVNLSDKKYKELFYIYIMYSYKYIKYIYSNLSDCELI KFVCNDIDKFTLEFKHVLDGKRKINNPNEKLEYLHNMRILLNEYPFYNRIIKIFISELEESITESEEFKLLKDNFIIRIE NMIENGKINDAKLLIEDYSKTFADDVKILNIKAILFMCEDKFEEADFALKKALSLDLENEDTIYNIEYLENLK
Sequences:
>Translated_713_residues MLLSIVMMVKNEENILEKTLKSLSVLRNSIESELIIVDTGSTDNTIRIAKQYTEKVYFHNWNDDFSSMRNISISYAKGEW LLILDADEVLIDYSNIIKFFESGLNKKFNSASVRLKNLYSFDKKLYGYCSVLRFFKNLDFKYCGKVHEQPMYKNPIFNNI ADFEHYGYLFEDEEIRINKVKRNEKLLLEELKEDEKSPYTNYQIGKNLIILGKYQEALDYLEKSYKLYSKLEIVPGYLIT NLAKVYLYLGKAKKCEKLCLKYINKDRNNIDIYYHIAQAQVDLGKYENSIDSYKRYIYLLDNYEMSTQANSLLSDTDAVG FRDEAIITLIKIYYKLEKYDLVISEYDNIEDVEKKKNVYFSLFMSLYKLNRFEDIKNYYREIPNSKVERDSFYKSMEDFI NNIKDDEKELIYKSLCDIEGNYGLLNKIRINKHVSLDTCRKILNEEKDIVYASVIKIAFEEKVDLLDIFYNMEYVWIEKY LRYILALERSFNVSIYKYIISCPNTSEIEKIRVYKVISKILLESVNLSDKKYKELFYIYIMYSYKYIKYIYSNLSDCELI KFVCNDIDKFTLEFKHVLDGKRKINNPNEKLEYLHNMRILLNEYPFYNRIIKIFISELEESITESEEFKLLKDNFIIRIE NMIENGKINDAKLLIEDYSKTFADDVKILNIKAILFMCEDKFEEADFALKKALSLDLENEDTIYNIEYLENLK >Mature_713_residues MLLSIVMMVKNEENILEKTLKSLSVLRNSIESELIIVDTGSTDNTIRIAKQYTEKVYFHNWNDDFSSMRNISISYAKGEW LLILDADEVLIDYSNIIKFFESGLNKKFNSASVRLKNLYSFDKKLYGYCSVLRFFKNLDFKYCGKVHEQPMYKNPIFNNI ADFEHYGYLFEDEEIRINKVKRNEKLLLEELKEDEKSPYTNYQIGKNLIILGKYQEALDYLEKSYKLYSKLEIVPGYLIT NLAKVYLYLGKAKKCEKLCLKYINKDRNNIDIYYHIAQAQVDLGKYENSIDSYKRYIYLLDNYEMSTQANSLLSDTDAVG FRDEAIITLIKIYYKLEKYDLVISEYDNIEDVEKKKNVYFSLFMSLYKLNRFEDIKNYYREIPNSKVERDSFYKSMEDFI NNIKDDEKELIYKSLCDIEGNYGLLNKIRINKHVSLDTCRKILNEEKDIVYASVIKIAFEEKVDLLDIFYNMEYVWIEKY LRYILALERSFNVSIYKYIISCPNTSEIEKIRVYKVISKILLESVNLSDKKYKELFYIYIMYSYKYIKYIYSNLSDCELI KFVCNDIDKFTLEFKHVLDGKRKINNPNEKLEYLHNMRILLNEYPFYNRIIKIFISELEESITESEEFKLLKDNFIIRIE NMIENGKINDAKLLIEDYSKTFADDVKILNIKAILFMCEDKFEEADFALKKALSLDLENEDTIYNIEYLENLK
Specific function: Unknown
COG id: COG0463
COG function: function code M; Glycosyltransferases involved in cell wall biogenesis
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 2 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 - InterPro: IPR011990 [H]
Pfam domain/function: PF00535 Glycos_transf_2 [H]
EC number: NA
Molecular weight: Translated: 85109; Mature: 85109
Theoretical pI: Translated: 5.27; Mature: 5.27
Prosite motif: PS50293 TPR_REGION ; PS00141 ASP_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLSIVMMVKNEENILEKTLKSLSVLRNSIESELIIVDTGSTDNTIRIAKQYTEKVYFHN CCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHEEEC WNDDFSSMRNISISYAKGEWLLILDADEVLIDYSNIIKFFESGLNKKFNSASVRLKNLYS CCCCHHHHHCCEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH FDKKLYGYCSVLRFFKNLDFKYCGKVHEQPMYKNPIFNNIADFEHYGYLFEDEEIRINKV HHHHHHHHHHHHHHHHCCCHHHHCHHHCCCCCCCCCHHHHHHHHHCCCEEECCCEEEEHH KRNEKLLLEELKEDEKSPYTNYQIGKNLIILGKYQEALDYLEKSYKLYSKLEIVPGYLIT CCHHHHHHHHHHHHCCCCCCCEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCHHHHH NLAKVYLYLGKAKKCEKLCLKYINKDRNNIDIYYHIAQAQVDLGKYENSIDSYKRYIYLL HHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHEEEEEE DNYEMSTQANSLLSDTDAVGFRDEAIITLIKIYYKLEKYDLVISEYDNIEDVEKKKNVYF ECCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHH SLFMSLYKLNRFEDIKNYYREIPNSKVERDSFYKSMEDFINNIKDDEKELIYKSLCDIEG HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC NYGLLNKIRINKHVSLDTCRKILNEEKDIVYASVIKIAFEEKVDLLDIFYNMEYVWIEKY CCCCEEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH LRYILALERSFNVSIYKYIISCPNTSEIEKIRVYKVISKILLESVNLSDKKYKELFYIYI HHHHHHHHCCCCCEEEEHEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH MYSYKYIKYIYSNLSDCELIKFVCNDIDKFTLEFKHVLDGKRKINNPNEKLEYLHNMRIL HHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHH LNEYPFYNRIIKIFISELEESITESEEFKLLKDNFIIRIENMIENGKINDAKLLIEDYSK HHCCCHHHHHHHHHHHHHHHHHCCCHHHEEECCCEEEEEEHHHCCCCCCHHHHHHHHHHH TFADDVKILNIKAILFMCEDKFEEADFALKKALSLDLENEDTIYNIEYLENLK HHHCCEEEEEEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHCCC >Mature Secondary Structure MLLSIVMMVKNEENILEKTLKSLSVLRNSIESELIIVDTGSTDNTIRIAKQYTEKVYFHN CCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHEEEC WNDDFSSMRNISISYAKGEWLLILDADEVLIDYSNIIKFFESGLNKKFNSASVRLKNLYS CCCCHHHHHCCEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH FDKKLYGYCSVLRFFKNLDFKYCGKVHEQPMYKNPIFNNIADFEHYGYLFEDEEIRINKV HHHHHHHHHHHHHHHHCCCHHHHCHHHCCCCCCCCCHHHHHHHHHCCCEEECCCEEEEHH KRNEKLLLEELKEDEKSPYTNYQIGKNLIILGKYQEALDYLEKSYKLYSKLEIVPGYLIT CCHHHHHHHHHHHHCCCCCCCEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCHHHHH NLAKVYLYLGKAKKCEKLCLKYINKDRNNIDIYYHIAQAQVDLGKYENSIDSYKRYIYLL HHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHEEEEEE DNYEMSTQANSLLSDTDAVGFRDEAIITLIKIYYKLEKYDLVISEYDNIEDVEKKKNVYF ECCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHH SLFMSLYKLNRFEDIKNYYREIPNSKVERDSFYKSMEDFINNIKDDEKELIYKSLCDIEG HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC NYGLLNKIRINKHVSLDTCRKILNEEKDIVYASVIKIAFEEKVDLLDIFYNMEYVWIEKY CCCCEEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH LRYILALERSFNVSIYKYIISCPNTSEIEKIRVYKVISKILLESVNLSDKKYKELFYIYI HHHHHHHHCCCCCEEEEHEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH MYSYKYIKYIYSNLSDCELIKFVCNDIDKFTLEFKHVLDGKRKINNPNEKLEYLHNMRIL HHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHH LNEYPFYNRIIKIFISELEESITESEEFKLLKDNFIIRIENMIENGKINDAKLLIEDYSK HHCCCHHHHHHHHHHHHHHHHHCCCHHHEEECCCEEEEEEHHHCCCCCCHHHHHHHHHHH TFADDVKILNIKAILFMCEDKFEEADFALKKALSLDLENEDTIYNIEYLENLK HHHCCEEEEEEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377; 9579063 [H]