| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is flgK [H]
Identifier: 126697802
GI number: 126697802
Start: 295310
End: 296620
Strand: Direct
Name: flgK [H]
Synonym: CD0231
Alternate gene names: 126697802
Gene position: 295310-296620 (Clockwise)
Preceding gene: 126697801
Following gene: 126697803
Centisome position: 6.88
GC content: 30.66
Gene sequence:
>1311_bases ATGGCAGGATTATTTTCCATTTTAAATACAGCTAATTCAGGAATGAATGCGCACCAAAAATCAATACAGACAATTTCTCA TAATATAAGTAACCTAGATACAGATGGTTATTCTAGGCAAAGGACCGAATTTGCTACAAATAGTCCAATGTATATGCCTA GTTTGAGCAATTCAATTGGAAGAGGACAATTAGGTACTGGAGTCCATGTAACAGATGTAACAAGAGCTAGAAATAGTTTT TATGATTACCAATTTAGGGCAGAAGCTCATAAGTATGGGAATACAGTTTCAAAATATGATTATTATAATACTATAGAAAC TATACTAAATGAACCATCAGACTATGGAATATCTGCAGGTATAGATGATTTTTTTAAAGGATGGGAGTCATTATCAAAGG ATATAAATAGTGATAATAAAAAAAGTCTAGTGGTAGAAAATGCATCTAATTTAGCGACTTTAATAAGCGAAAGTTATAAG AAGCTTGACAAGTTAAAAGGAGATATAGATTCTAATATAGATACTGAAATAAAACAAATAAATGACATGTTAAAAAGTCT TGAAGACTTAAATAAATCTATTGATATTATCTCTGGTTCTGGCTCTACACCAAATGATTTGCTTGATGAAAGAGATAGAA TATTGGATAACTTGAGTTTTAAGTTAGACCTTGAAAATAGTGATGTTAAAAATATGCTTTCAGATGGTAAATTGGAACTT AATGAGTTGAAAAATGCAGATGGAACTTGGAAAACAGGTATATCAGGAACTTTACAAGGCTTGTTTGAAATGCACGGTAA AATTGATACATATAAAAGCGACTTAAAAGATGTATCTGATGGATTAGCAAAACAGATAAATGATGTTTATAATTCATCTG CTGGAATAACTGTAAGAGATTTTTTTATAACCTCAAATGTAGCTGGTGAAGATATTATAAAAGTAAATCCAGCAATAAAA AGTAATTCAAATGAATTGAAGCTTACTACTGAAGAAGCTTCAAAGATTGCTAAGTTAAAGGATGAAAAAATAGATATTGG GGTAGCTGGTGGAAAAGTAAGCACAATAAGTGACCACTACAAGGCTTTTGCAGAATCGGTAGGTTTAGATTCTCAAAAAG TTAATCAAGATGAAGTGAATCAACGTAAAATTATAAATAATGTTGATAATTCACGAATGAGTGTTTCAGGTGTATCTTTA GATGAAGAAATGACAGAACTCATGAAAGTACAACGTTCCTATCAAGCTAGTGCAAAAGTTATGTCAACAGCAGTACAACT ATTGGATGTTGTAATAAATGGGATAATTTAA
Upstream 100 bases:
>100_bases TCACGAAAAAAATGATTAATTTCATAAAACCAGTTGATAAACAAACTACAACTTATAATTCTTATGGAAACATTAGAAAA TAGATATTGGGAGGAGAAAT
Downstream 100 bases:
>100_bases TAAAAGGAGGAATTTATAATGAGAGTTAGTACAGGTATGATGTCCAGTAGTTATCTAAATTCATTGCAAGATAATTTGCA AAGATTAGACAAGGTCAATA
Product: flagellar hook-associated protein
Products: NA
Alternate protein names: HAP1 [H]
Number of amino acids: Translated: 436; Mature: 435
Protein sequence:
>436_residues MAGLFSILNTANSGMNAHQKSIQTISHNISNLDTDGYSRQRTEFATNSPMYMPSLSNSIGRGQLGTGVHVTDVTRARNSF YDYQFRAEAHKYGNTVSKYDYYNTIETILNEPSDYGISAGIDDFFKGWESLSKDINSDNKKSLVVENASNLATLISESYK KLDKLKGDIDSNIDTEIKQINDMLKSLEDLNKSIDIISGSGSTPNDLLDERDRILDNLSFKLDLENSDVKNMLSDGKLEL NELKNADGTWKTGISGTLQGLFEMHGKIDTYKSDLKDVSDGLAKQINDVYNSSAGITVRDFFITSNVAGEDIIKVNPAIK SNSNELKLTTEEASKIAKLKDEKIDIGVAGGKVSTISDHYKAFAESVGLDSQKVNQDEVNQRKIINNVDNSRMSVSGVSL DEEMTELMKVQRSYQASAKVMSTAVQLLDVVINGII
Sequences:
>Translated_436_residues MAGLFSILNTANSGMNAHQKSIQTISHNISNLDTDGYSRQRTEFATNSPMYMPSLSNSIGRGQLGTGVHVTDVTRARNSF YDYQFRAEAHKYGNTVSKYDYYNTIETILNEPSDYGISAGIDDFFKGWESLSKDINSDNKKSLVVENASNLATLISESYK KLDKLKGDIDSNIDTEIKQINDMLKSLEDLNKSIDIISGSGSTPNDLLDERDRILDNLSFKLDLENSDVKNMLSDGKLEL NELKNADGTWKTGISGTLQGLFEMHGKIDTYKSDLKDVSDGLAKQINDVYNSSAGITVRDFFITSNVAGEDIIKVNPAIK SNSNELKLTTEEASKIAKLKDEKIDIGVAGGKVSTISDHYKAFAESVGLDSQKVNQDEVNQRKIINNVDNSRMSVSGVSL DEEMTELMKVQRSYQASAKVMSTAVQLLDVVINGII >Mature_435_residues AGLFSILNTANSGMNAHQKSIQTISHNISNLDTDGYSRQRTEFATNSPMYMPSLSNSIGRGQLGTGVHVTDVTRARNSFY DYQFRAEAHKYGNTVSKYDYYNTIETILNEPSDYGISAGIDDFFKGWESLSKDINSDNKKSLVVENASNLATLISESYKK LDKLKGDIDSNIDTEIKQINDMLKSLEDLNKSIDIISGSGSTPNDLLDERDRILDNLSFKLDLENSDVKNMLSDGKLELN ELKNADGTWKTGISGTLQGLFEMHGKIDTYKSDLKDVSDGLAKQINDVYNSSAGITVRDFFITSNVAGEDIIKVNPAIKS NSNELKLTTEEASKIAKLKDEKIDIGVAGGKVSTISDHYKAFAESVGLDSQKVNQDEVNQRKIINNVDNSRMSVSGVSLD EEMTELMKVQRSYQASAKVMSTAVQLLDVVINGII
Specific function: Unknown
COG id: COG1256
COG function: function code N; Flagellar hook-associated protein
Gene ontology:
Cell location: Secreted. Bacterial flagellum (By similarity) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the flagella basal body rod proteins family [H]
Homologues:
Organism=Escherichia coli, GI1787323, Length=216, Percent_Identity=27.3148148148148, Blast_Score=89, Evalue=4e-19,
Paralogues:
None
Copy number: 10-20 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010930 - InterPro: IPR001444 - InterPro: IPR019776 - InterPro: IPR002371 [H]
Pfam domain/function: PF06429 DUF1078; PF00460 Flg_bb_rod [H]
EC number: NA
Molecular weight: Translated: 48048; Mature: 47917
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGLFSILNTANSGMNAHQKSIQTISHNISNLDTDGYSRQRTEFATNSPMYMPSLSNSIG CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCC RGQLGTGVHVTDVTRARNSFYDYQFRAEAHKYGNTVSKYDYYNTIETILNEPSDYGISAG CCCCCCCEEEHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCC IDDFFKGWESLSKDINSDNKKSLVVENASNLATLISESYKKLDKLKGDIDSNIDTEIKQI HHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH NDMLKSLEDLNKSIDIISGSGSTPNDLLDERDRILDNLSFKLDLENSDVKNMLSDGKLEL HHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCCHHHHHHCCCCEEH NELKNADGTWKTGISGTLQGLFEMHGKIDTYKSDLKDVSDGLAKQINDVYNSSAGITVRD HHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE FFITSNVAGEDIIKVNPAIKSNSNELKLTTEEASKIAKLKDEKIDIGVAGGKVSTISDHY EEEECCCCCCCEEEECCCCCCCCCCEEEEHHHHHHHHHHCCCCEEEEECCCCCCHHHHHH KAFAESVGLDSQKVNQDEVNQRKIINNVDNSRMSVSGVSLDEEMTELMKVQRSYQASAKV HHHHHHHCCCHHHCCHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHH MSTAVQLLDVVINGII HHHHHHHHHHHHHCCC >Mature Secondary Structure AGLFSILNTANSGMNAHQKSIQTISHNISNLDTDGYSRQRTEFATNSPMYMPSLSNSIG CHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCC RGQLGTGVHVTDVTRARNSFYDYQFRAEAHKYGNTVSKYDYYNTIETILNEPSDYGISAG CCCCCCCEEEHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCC IDDFFKGWESLSKDINSDNKKSLVVENASNLATLISESYKKLDKLKGDIDSNIDTEIKQI HHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH NDMLKSLEDLNKSIDIISGSGSTPNDLLDERDRILDNLSFKLDLENSDVKNMLSDGKLEL HHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCCHHHHHHCCCCEEH NELKNADGTWKTGISGTLQGLFEMHGKIDTYKSDLKDVSDGLAKQINDVYNSSAGITVRD HHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE FFITSNVAGEDIIKVNPAIKSNSNELKLTTEEASKIAKLKDEKIDIGVAGGKVSTISDHY EEEECCCCCCCEEEECCCCCCCCCCEEEEHHHHHHHHHHCCCCEEEEECCCCCCHHHHHH KAFAESVGLDSQKVNQDEVNQRKIINNVDNSRMSVSGVSLDEEMTELMKVQRSYQASAKV HHHHHHHCCCHHHCCHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHH MSTAVQLLDVVINGII HHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377; 8045879 [H]