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The map label for this gene is ydhO [H]

Identifier: 126697756

GI number: 126697756

Start: 241238

End: 242260

Strand: Direct

Name: ydhO [H]

Synonym: CD0183

Alternate gene names: 126697756

Gene position: 241238-242260 (Clockwise)

Preceding gene: 126697755

Following gene: 126697757

Centisome position: 5.62

GC content: 31.57

Gene sequence:

>1023_bases
GTGAAGAAAAAGATATTAATACCAGTATTTGCATCAGTTATGGCATTATCAGTAAGTTCAATTGTAAATGCAGATGAAGT
AAATGATTCATCTCAAAATAAGGATGATAAAACAAATACTGAATTAAATTTAGGTGAATATAAAGAAGTAAAATATAAAG
TTGCAAAAATAAAAGATGGAGTAGCTATAAAGATAAGAGAAGAAGGTCAAGTTCAAAACATAGCTTATTCTGGAGATGAA
TTTACGGTTTTAGGAACTCAAGGAGAATGGGTTAAGGTTAAAGTTGAAGATGGCGAAGGTTGGTTAGCTACTAGATATGT
AGATATATCTGAAGGTGTAGGATATACTAACGCTGATAAAGTAAACTTAAGAAAAGATAAGAGTGAAAGTTCAGAAGTAA
TTGAAGAGCTGGAAAAAGGAAGTTCTTTATTGGTTTTGGAAGATAATGGAGATTGGTTAAAAGTTAAAGATGGGGAAACA
GAAGGATATGTAAAATCATCTTATATATCTGATAAAGCTCCTGTAATAGAAGAGCCACAAGTAAACCCAAGTATTGACCA
AAATGTAGATTCTACAAATAATAATCAACAAAACAATGCAAATACTAATCAACAAAATAATAATTCAAATGTGCCAACAG
CTAACTCTAATGCAGTTCAAGCTGTACTTAACTTGGCATATTCTAAGCAAGGTTGTCCATATGTTTGGGGAGCAGAAGGA
CCAAACACTTTTGACTGTTCTGGATTTACACAATATGTGTATAGAAATGCAGTAGGAAAGAATATACCAAGAACATCTAA
AGCACAATCTAAATATGGACAAACTGTAAGTAAAGCAAATTTACAACCAGGAGACTTAGTATTCTTCACAACTAATGGTT
CTGGTTCTGTTAGTCATGTTGGAATATATGTAGGTGGGGGTAATATGATACATTCACCATCAACAGGAAAAACAGTTAGT
GTAACTAGTATAAATTCATCATACTATACAGCAAGATTTGTTACAGCAAAAAGAATATTATAA

Upstream 100 bases:

>100_bases
TTTTATTAATGTATTGTGTATTAGTATTTTATCCTTAGGTACACTTCACCTACAAAATAGAATCATAAGATAATTATGGG
AAAATTTTAGGAGGTTTATC

Downstream 100 bases:

>100_bases
TCGGTTTGTAATATGACAAATTGATAAATACATAAATATATATAAACGCTCTATATTATATTTAATTTAATCATGGAAAC
AAAAAATGATTATATTTTAA

Product: cell wall hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MKKKILIPVFASVMALSVSSIVNADEVNDSSQNKDDKTNTELNLGEYKEVKYKVAKIKDGVAIKIREEGQVQNIAYSGDE
FTVLGTQGEWVKVKVEDGEGWLATRYVDISEGVGYTNADKVNLRKDKSESSEVIEELEKGSSLLVLEDNGDWLKVKDGET
EGYVKSSYISDKAPVIEEPQVNPSIDQNVDSTNNNQQNNANTNQQNNNSNVPTANSNAVQAVLNLAYSKQGCPYVWGAEG
PNTFDCSGFTQYVYRNAVGKNIPRTSKAQSKYGQTVSKANLQPGDLVFFTTNGSGSVSHVGIYVGGGNMIHSPSTGKTVS
VTSINSSYYTARFVTAKRIL

Sequences:

>Translated_340_residues
MKKKILIPVFASVMALSVSSIVNADEVNDSSQNKDDKTNTELNLGEYKEVKYKVAKIKDGVAIKIREEGQVQNIAYSGDE
FTVLGTQGEWVKVKVEDGEGWLATRYVDISEGVGYTNADKVNLRKDKSESSEVIEELEKGSSLLVLEDNGDWLKVKDGET
EGYVKSSYISDKAPVIEEPQVNPSIDQNVDSTNNNQQNNANTNQQNNNSNVPTANSNAVQAVLNLAYSKQGCPYVWGAEG
PNTFDCSGFTQYVYRNAVGKNIPRTSKAQSKYGQTVSKANLQPGDLVFFTTNGSGSVSHVGIYVGGGNMIHSPSTGKTVS
VTSINSSYYTARFVTAKRIL
>Mature_340_residues
MKKKILIPVFASVMALSVSSIVNADEVNDSSQNKDDKTNTELNLGEYKEVKYKVAKIKDGVAIKIREEGQVQNIAYSGDE
FTVLGTQGEWVKVKVEDGEGWLATRYVDISEGVGYTNADKVNLRKDKSESSEVIEELEKGSSLLVLEDNGDWLKVKDGET
EGYVKSSYISDKAPVIEEPQVNPSIDQNVDSTNNNQQNNANTNQQNNNSNVPTANSNAVQAVLNLAYSKQGCPYVWGAEG
PNTFDCSGFTQYVYRNAVGKNIPRTSKAQSKYGQTVSKANLQPGDLVFFTTNGSGSVSHVGIYVGGGNMIHSPSTGKTVS
VTSINSSYYTARFVTAKRIL

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=126, Percent_Identity=38.8888888888889, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI1786421, Length=127, Percent_Identity=33.8582677165354, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1788501, Length=111, Percent_Identity=37.8378378378378, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1788001, Length=112, Percent_Identity=38.3928571428571, Blast_Score=76, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 37000; Mature: 37000

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKILIPVFASVMALSVSSIVNADEVNDSSQNKDDKTNTELNLGEYKEVKYKVAKIKDG
CCCEEEHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCEECCCCHHHHEEEEEEECCC
VAIKIREEGQVQNIAYSGDEFTVLGTQGEWVKVKVEDGEGWLATRYVDISEGVGYTNADK
EEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCC
VNLRKDKSESSEVIEELEKGSSLLVLEDNGDWLKVKDGETEGYVKSSYISDKAPVIEEPQ
EEEECCCCHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCCCEEEECCCCCCCCCCCCCC
VNPSIDQNVDSTNNNQQNNANTNQQNNNSNVPTANSNAVQAVLNLAYSKQGCPYVWGAEG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEECCCC
PNTFDCSGFTQYVYRNAVGKNIPRTSKAQSKYGQTVSKANLQPGDLVFFTTNGSGSVSHV
CCEECCCHHHHHHHHHHHCCCCCCCCHHHHHHCCHHHHCCCCCCCEEEEEECCCCCEEEE
GIYVGGGNMIHSPSTGKTVSVTSINSSYYTARFVTAKRIL
EEEEECCCEEECCCCCCEEEEEEECCCEEEEEEEEEECCC
>Mature Secondary Structure
MKKKILIPVFASVMALSVSSIVNADEVNDSSQNKDDKTNTELNLGEYKEVKYKVAKIKDG
CCCEEEHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCEECCCCHHHHEEEEEEECCC
VAIKIREEGQVQNIAYSGDEFTVLGTQGEWVKVKVEDGEGWLATRYVDISEGVGYTNADK
EEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCC
VNLRKDKSESSEVIEELEKGSSLLVLEDNGDWLKVKDGETEGYVKSSYISDKAPVIEEPQ
EEEECCCCHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCCCEEEECCCCCCCCCCCCCC
VNPSIDQNVDSTNNNQQNNANTNQQNNNSNVPTANSNAVQAVLNLAYSKQGCPYVWGAEG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEECCCC
PNTFDCSGFTQYVYRNAVGKNIPRTSKAQSKYGQTVSKANLQPGDLVFFTTNGSGSVSHV
CCEECCCHHHHHHHHHHHCCCCCCCCHHHHHHCCHHHHCCCCCCCEEEEEECCCCCEEEE
GIYVGGGNMIHSPSTGKTVSVTSINSSYYTARFVTAKRIL
EEEEECCCEEECCCCCCEEEEEEECCCEEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]