| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is ygeZ [C]
Identifier: 126697718
GI number: 126697718
Start: 195506
End: 196672
Strand: Direct
Name: ygeZ [C]
Synonym: CD0146
Alternate gene names: 126697718
Gene position: 195506-196672 (Clockwise)
Preceding gene: 126697717
Following gene: 126697719
Centisome position: 4.56
GC content: 32.22
Gene sequence:
>1167_bases ATGATTTTTATAAAAAATGGTAAAATAAATACCATAACAAATGGGATAATTCATGGAGATATACTTATAGATGAAGGAAA AATAATAGAAATTGGAGAAGATTTGATAGCTCCTTTAGATGTAGAGGTAATAGATGCTAGTAATAAACTTGTGTTTCCTG GATTTATAGATGCTCATACTCACTTAGGCTTATGGGAAGATGGTATAGGGTTTGAAGGAGCAGATGGAAATGAAGAGACT GACCCAATAACACCACAATTAAATCCTATAGATGGAATTAATCCAATGGATAGAACTTTTAAAGAAGCTTTTGAAGGTGG AATAACTTCTGTTTGTACAACCCCTGGAAGTGCAAATGTTATGGGTGGTCAATGTATAGCTATAAAGACATGTGGAAAAA GAATTGATAAAATGGTAATAAAAAATCCAGTTGCATCTAAAATTGCTTTTGGAGAAAATCCAAAGAGCTGTTATGGTCAG GATGATAAATCTCCTCAAACTAGAATGGCTATAGCTGCTTTACTTAGAGAAAACCTAAAAAAAGCAGAAGAATATTTAGA GGATATTGATATGTATGAGAGTCATGATGATGAAGACTGTGAAAAACCTGAATATGATATAAAAATGGAAAGTTTAATAC CAGTTTTAAGAAGAGAAATTCCTTTTAAGGCACATGCTCATAGAGCAGATGATATGTTTACAGCAATAAGAATTGCAAAA GAATTTAATTTAAAGCTTACATTAGACCATTGTACAGAAGGTCATCTTATTGTAGATGAATTAGTGGAAGAAGAGTTTCC TGTAATAGTAGGGCCATCTTTGTCAGAAAGGTCTAAATTTGAGCTTAGAAATTTGACATTTAATACAGCAGGAATACTTT CAAATGCAGGTCTTGATGTATGTATAATGACAGACCATCCAGTAATACCAGTTCAATATCTTCCAATATGTGCAGGTATT GCAGTAAAACATGGTATGAAAGAAGAAAAAGCAATAGAATCAATTACGATAAATCCAGCTAAGACTTTAGGAATAGAAGA TAGAGTAGGCTCTATAGAAGTTGGTAAAGATGCAGACCTAGTAATTTGGGATAATTCTCCACTAGAGATTCAAAGTAATG TACTCTACACTATAATAAATGGCAAAGTAGTGTATGAGAAAAAATAA
Upstream 100 bases:
>100_bases AGATTACTCGAGTGTATAAATGTTAAAAATTTGTAAAAGTATATAGTAAGAAAATATATTAAAATAAGAACGATAGTCTT GAAAATCAGGAGGAAAATGA
Downstream 100 bases:
>100_bases CTTGACAATTATTAAAAAATTAACTAATATAAGAGTGTAAGGAAAATTAAAAAATCAAAGAAGATCTTCGGGGCAGGGTG AAATTCCCTACCGGCGGTAT
Product: amidohydrolase
Products: NA
Alternate protein names: Amidohydrolase Family Protein; Imidazolonepropionase; Amidohydrolase Imidazolonepropionase; Metal-Dependent Hydrolase Superfamily Protein; Imidazolonepropionase And Related Amidohydrolases; Dihydroorotase; Amidohydrolase-Like Domain-Containing Protein; Amidohydrolase Protein; Metallo-Dependent Hydrolase; Secreted; N-Acetylglucosamine-6-Phosphate Deacetylase; Amidohodrolase; Imidazolonepropionase Or Related Amidohydrolase; Imidazolone-5-Propionate Hydrolase; Aminohydrolase
Number of amino acids: Translated: 388; Mature: 388
Protein sequence:
>388_residues MIFIKNGKINTITNGIIHGDILIDEGKIIEIGEDLIAPLDVEVIDASNKLVFPGFIDAHTHLGLWEDGIGFEGADGNEET DPITPQLNPIDGINPMDRTFKEAFEGGITSVCTTPGSANVMGGQCIAIKTCGKRIDKMVIKNPVASKIAFGENPKSCYGQ DDKSPQTRMAIAALLRENLKKAEEYLEDIDMYESHDDEDCEKPEYDIKMESLIPVLRREIPFKAHAHRADDMFTAIRIAK EFNLKLTLDHCTEGHLIVDELVEEEFPVIVGPSLSERSKFELRNLTFNTAGILSNAGLDVCIMTDHPVIPVQYLPICAGI AVKHGMKEEKAIESITINPAKTLGIEDRVGSIEVGKDADLVIWDNSPLEIQSNVLYTIINGKVVYEKK
Sequences:
>Translated_388_residues MIFIKNGKINTITNGIIHGDILIDEGKIIEIGEDLIAPLDVEVIDASNKLVFPGFIDAHTHLGLWEDGIGFEGADGNEET DPITPQLNPIDGINPMDRTFKEAFEGGITSVCTTPGSANVMGGQCIAIKTCGKRIDKMVIKNPVASKIAFGENPKSCYGQ DDKSPQTRMAIAALLRENLKKAEEYLEDIDMYESHDDEDCEKPEYDIKMESLIPVLRREIPFKAHAHRADDMFTAIRIAK EFNLKLTLDHCTEGHLIVDELVEEEFPVIVGPSLSERSKFELRNLTFNTAGILSNAGLDVCIMTDHPVIPVQYLPICAGI AVKHGMKEEKAIESITINPAKTLGIEDRVGSIEVGKDADLVIWDNSPLEIQSNVLYTIINGKVVYEKK >Mature_388_residues MIFIKNGKINTITNGIIHGDILIDEGKIIEIGEDLIAPLDVEVIDASNKLVFPGFIDAHTHLGLWEDGIGFEGADGNEET DPITPQLNPIDGINPMDRTFKEAFEGGITSVCTTPGSANVMGGQCIAIKTCGKRIDKMVIKNPVASKIAFGENPKSCYGQ DDKSPQTRMAIAALLRENLKKAEEYLEDIDMYESHDDEDCEKPEYDIKMESLIPVLRREIPFKAHAHRADDMFTAIRIAK EFNLKLTLDHCTEGHLIVDELVEEEFPVIVGPSLSERSKFELRNLTFNTAGILSNAGLDVCIMTDHPVIPVQYLPICAGI AVKHGMKEEKAIESITINPAKTLGIEDRVGSIEVGKDADLVIWDNSPLEIQSNVLYTIINGKVVYEKK
Specific function: Unknown
COG id: COG1228
COG function: function code Q; Imidazolonepropionase and related amidohydrolases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 3.-.-.- [C]
Molecular weight: Translated: 42814; Mature: 42814
Theoretical pI: Translated: 4.48; Mature: 4.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIFIKNGKINTITNGIIHGDILIDEGKIIEIGEDLIAPLDVEVIDASNKLVFPGFIDAHT CEEEECCCEEEEECCEEEEEEEECCCCEEEECHHHCCCCCEEEEECCCCEEECCEECCCC HLGLWEDGIGFEGADGNEETDPITPQLNPIDGINPMDRTFKEAFEGGITSVCTTPGSANV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCC MGGQCIAIKTCGKRIDKMVIKNPVASKIAFGENPKSCYGQDDKSPQTRMAIAALLRENLK CCCEEEEEEHHHHHHHHHHHCCCHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHH KAEEYLEDIDMYESHDDEDCEKPEYDIKMESLIPVLRREIPFKAHAHRADDMFTAIRIAK HHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHH EFNLKLTLDHCTEGHLIVDELVEEEFPVIVGPSLSERSKFELRNLTFNTAGILSNAGLDV HCCEEEEEECCCCCCEEHHHHHHHCCCEEECCCCCCCCCEEEHEEEEEHHHHHCCCCCEE CIMTDHPVIPVQYLPICAGIAVKHGMKEEKAIESITINPAKTLGIEDRVGSIEVGKDADL EEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHEEECCCHHHCCCCCCCCCEEECCCCCE VIWDNSPLEIQSNVLYTIINGKVVYEKK EEECCCCCEEECCEEEEEECCEEEEECC >Mature Secondary Structure MIFIKNGKINTITNGIIHGDILIDEGKIIEIGEDLIAPLDVEVIDASNKLVFPGFIDAHT CEEEECCCEEEEECCEEEEEEEECCCCEEEECHHHCCCCCEEEEECCCCEEECCEECCCC HLGLWEDGIGFEGADGNEETDPITPQLNPIDGINPMDRTFKEAFEGGITSVCTTPGSANV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCC MGGQCIAIKTCGKRIDKMVIKNPVASKIAFGENPKSCYGQDDKSPQTRMAIAALLRENLK CCCEEEEEEHHHHHHHHHHHCCCHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHH KAEEYLEDIDMYESHDDEDCEKPEYDIKMESLIPVLRREIPFKAHAHRADDMFTAIRIAK HHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHH EFNLKLTLDHCTEGHLIVDELVEEEFPVIVGPSLSERSKFELRNLTFNTAGILSNAGLDV HCCEEEEEECCCCCCEEHHHHHHHCCCEEECCCCCCCCCEEEHEEEEEHHHHHCCCCCEE CIMTDHPVIPVQYLPICAGIAVKHGMKEEKAIESITINPAKTLGIEDRVGSIEVGKDADL EEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHEEECCCHHHCCCCCCCCCEEECCCCCE VIWDNSPLEIQSNVLYTIINGKVVYEKK EEECCCCCEEECCEEEEEECCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA