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The map label for this gene is ydcI [H]

Identifier: 126697717

GI number: 126697717

Start: 193208

End: 195358

Strand: Direct

Name: ydcI [H]

Synonym: CD0145

Alternate gene names: 126697717

Gene position: 193208-195358 (Clockwise)

Preceding gene: 126697716

Following gene: 126697718

Centisome position: 4.5

GC content: 29.24

Gene sequence:

>2151_bases
GTGAATAAATTGGATATAAATCAAATCTTAAAAAAAGAGTTTAATCTTAGAGATGAACAAATAAATAATACATTAAAACT
TATTGATGAAGGAAATACAATACCATTTATAGCTAGATATAGAAAAGAAATGACTGGCGAGATGAGTGATGTTACACTAA
GAGAATTTTATGAAAAACTAATGTATTTGAGAAATCTTCAAAGTAGAAAAGATGATGTAGTTAGACTAATAGATGAACAA
GGGAAATTAACAGATGAAATAACACAAAATATAGAAAAAGCAAAAACATTACAAGAAGTAGAAGATATATATGCTCCATA
TAAACAAAAGAAAAGAACTAGAGCAACAATAGCAAAAGAAAAAGGATTAGAAAATTTAGCATTGTCAATACTAGAGAATA
ATTTAGATAATATAGAAATAGAGGCAAAGAATTATCTTGATGAAGAGAAAGAAGTTCTTTCTATTGAAGATGCTCTAAAA
GGTGCTAGAGATATAATTGCAGAACTAGTCTCAGATGATGCTAAGATTAGAAAGTATATAAGAGAATTAGCTTTAAGAGA
AGGTATGATAGTTAGCAAAAGTGCTACTGATGAGAAATCGGTTTATGATATGTATTATGATTATAGCGAAGCAGTAAAAA
GTATGGCTCCACATAGAGTTTTGGCAATAAACAGAGGAGAAAAAGAAAGCTTCCTAAAGGTTAAGTTGGAAATAAATAAT
GATAAAGTTTTAAATTACATAATAAACGAATATGTAAATGATAAAAATTTCAAAAATAAAGAAGAAATCGTAAGTTCAAT
AGAAGATTCTTATAAAAGATTAATTTTCCCATCAATAGAAAGAGAAATAAGAAATCATTTAACAGAAATAGCTCAAGAAA
GAGCTATAAGTGTATTTGGAAAGAATGTTAAAAGTTTATTGCTTCAACCACCAGTTAAAGACAAAGTAGTTATGGGATTT
GACCCTGCATTTAGAACTGGATGTAAAATAGCTGTAGTAGATAAAAATGGTAAACTACTAGATTATACAACAGTATATCC
AACAGACCCTCAAAATGATGTAGAGGGAGCAAAGAAAGTTTTAAAAGGATTGATTGAAAAATACGATATAGATATAATTT
CAATTGGAAATGGTACTGCATCTAGAGAATCAGAAACTTTTGTATCAGAAATGATAAAAGAAATAGATAGCGAAGTGCAG
TATGTGATAGTTAGTGAAGCAGGAGCATCTGTTTATTCAGCATCTGAACTTGCAAATGAGGAACATCCAGATATAAATGT
ATCAATAAGAGGAGCTATATCTATAGCTAGAAGATTACAAGACCCATTAGCAGAGCTTGTAAAAATAGACCCTAAAAGTA
TTGGTGTTGGTCAATATCAGCATGATTTAAACAAAAAGAGATTAGAAGAAGTACTAGATGGAGTTGTTGAAGATTCTGTA
AATAGTGTTGGAGTAGATTTAAATACTGCATCATACTCCCTACTAGAACATGTTGCAGGAATAAGTAAAGCTATAGCAAA
AAATATAATAGCATATAGAGAAGAAAATGGAGATTTTACGTCAAGAGCACAATTGAAAAAAGTAAAAAGACTAGGACCTC
AAGCATTTACTCAATGTGCTGGATTTATGAGAATCTTAGAGGGTAAAAATCCACTAGATAATACAGGTGTGCATCCTGAA
AGTTATGATATATGTAAAAAAATGATTGAGATAATTGGATATTCTTTAGATGATGTAAAGAATAAGAATATAGGTGAAAT
AGATGAAAAAATAAAAGAAATTGGCTTGAGAGAATTAAGTGAAAAACTGGAAGTAGGACAAGTTACATTAAAAGATATTA
TAGCTGAAATCAAAAAACCAGGAAGAGACCCAAGAGAAGAAGGTATAAAACCTATACTTAGAACTGATGTCTTAAAAATT
GAAGATATACAAGAGGGTATGACTTTAAAAGGTACAATAAGAAATGTTGTAGACTTTGGTGCATTTGTAGATATTGGAAT
AAAAAATGACGGATTAGTTCATAAATCAGAAATGAGTAATAGTTTTGTGAAAGACCCTATGAGTATTGTTACAGTAGGTG
ATATAGTAGATGTAAAAGTCATTGGAATTGACTTAAACAAAAAAAGAGTTGCCTTATCAATGAAAAAATAG

Upstream 100 bases:

>100_bases
AAGGTTAGTGCTTAATATGCACTTACAGCACTTAGGCTGAGGACGATAACCCTCAGCCTTCGTTCTGTTTTGTTATACTT
ATGAAAAACTAACATTAGGA

Downstream 100 bases:

>100_bases
ATAAGTTTATGTATGGTTATAGTACTTAGATTCTATATTTGTAAATGAGATTACTCGAGTGTATAAATGTTAAAAATTTG
TAAAAGTATATAGTAAGAAA

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 716; Mature: 716

Protein sequence:

>716_residues
MNKLDINQILKKEFNLRDEQINNTLKLIDEGNTIPFIARYRKEMTGEMSDVTLREFYEKLMYLRNLQSRKDDVVRLIDEQ
GKLTDEITQNIEKAKTLQEVEDIYAPYKQKKRTRATIAKEKGLENLALSILENNLDNIEIEAKNYLDEEKEVLSIEDALK
GARDIIAELVSDDAKIRKYIRELALREGMIVSKSATDEKSVYDMYYDYSEAVKSMAPHRVLAINRGEKESFLKVKLEINN
DKVLNYIINEYVNDKNFKNKEEIVSSIEDSYKRLIFPSIEREIRNHLTEIAQERAISVFGKNVKSLLLQPPVKDKVVMGF
DPAFRTGCKIAVVDKNGKLLDYTTVYPTDPQNDVEGAKKVLKGLIEKYDIDIISIGNGTASRESETFVSEMIKEIDSEVQ
YVIVSEAGASVYSASELANEEHPDINVSIRGAISIARRLQDPLAELVKIDPKSIGVGQYQHDLNKKRLEEVLDGVVEDSV
NSVGVDLNTASYSLLEHVAGISKAIAKNIIAYREENGDFTSRAQLKKVKRLGPQAFTQCAGFMRILEGKNPLDNTGVHPE
SYDICKKMIEIIGYSLDDVKNKNIGEIDEKIKEIGLRELSEKLEVGQVTLKDIIAEIKKPGRDPREEGIKPILRTDVLKI
EDIQEGMTLKGTIRNVVDFGAFVDIGIKNDGLVHKSEMSNSFVKDPMSIVTVGDIVDVKVIGIDLNKKRVALSMKK

Sequences:

>Translated_716_residues
MNKLDINQILKKEFNLRDEQINNTLKLIDEGNTIPFIARYRKEMTGEMSDVTLREFYEKLMYLRNLQSRKDDVVRLIDEQ
GKLTDEITQNIEKAKTLQEVEDIYAPYKQKKRTRATIAKEKGLENLALSILENNLDNIEIEAKNYLDEEKEVLSIEDALK
GARDIIAELVSDDAKIRKYIRELALREGMIVSKSATDEKSVYDMYYDYSEAVKSMAPHRVLAINRGEKESFLKVKLEINN
DKVLNYIINEYVNDKNFKNKEEIVSSIEDSYKRLIFPSIEREIRNHLTEIAQERAISVFGKNVKSLLLQPPVKDKVVMGF
DPAFRTGCKIAVVDKNGKLLDYTTVYPTDPQNDVEGAKKVLKGLIEKYDIDIISIGNGTASRESETFVSEMIKEIDSEVQ
YVIVSEAGASVYSASELANEEHPDINVSIRGAISIARRLQDPLAELVKIDPKSIGVGQYQHDLNKKRLEEVLDGVVEDSV
NSVGVDLNTASYSLLEHVAGISKAIAKNIIAYREENGDFTSRAQLKKVKRLGPQAFTQCAGFMRILEGKNPLDNTGVHPE
SYDICKKMIEIIGYSLDDVKNKNIGEIDEKIKEIGLRELSEKLEVGQVTLKDIIAEIKKPGRDPREEGIKPILRTDVLKI
EDIQEGMTLKGTIRNVVDFGAFVDIGIKNDGLVHKSEMSNSFVKDPMSIVTVGDIVDVKVIGIDLNKKRVALSMKK
>Mature_716_residues
MNKLDINQILKKEFNLRDEQINNTLKLIDEGNTIPFIARYRKEMTGEMSDVTLREFYEKLMYLRNLQSRKDDVVRLIDEQ
GKLTDEITQNIEKAKTLQEVEDIYAPYKQKKRTRATIAKEKGLENLALSILENNLDNIEIEAKNYLDEEKEVLSIEDALK
GARDIIAELVSDDAKIRKYIRELALREGMIVSKSATDEKSVYDMYYDYSEAVKSMAPHRVLAINRGEKESFLKVKLEINN
DKVLNYIINEYVNDKNFKNKEEIVSSIEDSYKRLIFPSIEREIRNHLTEIAQERAISVFGKNVKSLLLQPPVKDKVVMGF
DPAFRTGCKIAVVDKNGKLLDYTTVYPTDPQNDVEGAKKVLKGLIEKYDIDIISIGNGTASRESETFVSEMIKEIDSEVQ
YVIVSEAGASVYSASELANEEHPDINVSIRGAISIARRLQDPLAELVKIDPKSIGVGQYQHDLNKKRLEEVLDGVVEDSV
NSVGVDLNTASYSLLEHVAGISKAIAKNIIAYREENGDFTSRAQLKKVKRLGPQAFTQCAGFMRILEGKNPLDNTGVHPE
SYDICKKMIEIIGYSLDDVKNKNIGEIDEKIKEIGLRELSEKLEVGQVTLKDIIAEIKKPGRDPREEGIKPILRTDVLKI
EDIQEGMTLKGTIRNVVDFGAFVDIGIKNDGLVHKSEMSNSFVKDPMSIVTVGDIVDVKVIGIDLNKKRVALSMKK

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=788, Percent_Identity=35.2791878172589, Blast_Score=448, Evalue=1e-126,
Organism=Homo sapiens, GI27597090, Length=601, Percent_Identity=23.9600665557404, Blast_Score=101, Evalue=2e-21,
Organism=Escherichia coli, GI87082262, Length=724, Percent_Identity=43.7845303867403, Blast_Score=598, Evalue=1e-172,
Organism=Escherichia coli, GI1787140, Length=77, Percent_Identity=46.7532467532467, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17511129, Length=754, Percent_Identity=31.6976127320955, Blast_Score=292, Evalue=4e-79,
Organism=Caenorhabditis elegans, GI17552892, Length=594, Percent_Identity=22.5589225589226, Blast_Score=96, Evalue=8e-20,
Organism=Drosophila melanogaster, GI62484314, Length=763, Percent_Identity=32.8964613368283, Blast_Score=397, Evalue=1e-110,
Organism=Drosophila melanogaster, GI24640080, Length=582, Percent_Identity=22.8522336769759, Blast_Score=94, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 80903; Mature: 80903

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKLDINQILKKEFNLRDEQINNTLKLIDEGNTIPFIARYRKEMTGEMSDVTLREFYEKL
CCCCCHHHHHHHHHCCCHHHHCCHHHEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
MYLRNLQSRKDDVVRLIDEQGKLTDEITQNIEKAKTLQEVEDIYAPYKQKKRTRATIAKE
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
KGLENLALSILENNLDNIEIEAKNYLDEEKEVLSIEDALKGARDIIAELVSDDAKIRKYI
HCHHHHHHHHHHCCCCCEEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
RELALREGMIVSKSATDEKSVYDMYYDYSEAVKSMAPHRVLAINRGEKESFLKVKLEINN
HHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEEECC
DKVLNYIINEYVNDKNFKNKEEIVSSIEDSYKRLIFPSIEREIRNHLTEIAQERAISVFG
CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
KNVKSLLLQPPVKDKVVMGFDPAFRTGCKIAVVDKNGKLLDYTTVYPTDPQNDVEGAKKV
HHHHHHHCCCCCCCCEEECCCHHHHCCCEEEEECCCCCEEEEEEECCCCCCHHHHHHHHH
LKGLIEKYDIDIISIGNGTASRESETFVSEMIKEIDSEVQYVIVSEAGASVYSASELANE
HHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCC
EHPDINVSIRGAISIARRLQDPLAELVKIDPKSIGVGQYQHDLNKKRLEEVLDGVVEDSV
CCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHCH
NSVGVDLNTASYSLLEHVAGISKAIAKNIIAYREENGDFTSRAQLKKVKRLGPQAFTQCA
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHH
GFMRILEGKNPLDNTGVHPESYDICKKMIEIIGYSLDDVKNKNIGEIDEKIKEIGLRELS
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHH
EKLEVGQVTLKDIIAEIKKPGRDPREEGIKPILRTDVLKIEDIQEGMTLKGTIRNVVDFG
HHHHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
AFVDIGIKNDGLVHKSEMSNSFVKDPMSIVTVGDIVDVKVIGIDLNKKRVALSMKK
CEEEEECCCCCCEEHHHHCCHHHHCCHHEEEECCEEEEEEEEEECCCCEEEEECCC
>Mature Secondary Structure
MNKLDINQILKKEFNLRDEQINNTLKLIDEGNTIPFIARYRKEMTGEMSDVTLREFYEKL
CCCCCHHHHHHHHHCCCHHHHCCHHHEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
MYLRNLQSRKDDVVRLIDEQGKLTDEITQNIEKAKTLQEVEDIYAPYKQKKRTRATIAKE
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
KGLENLALSILENNLDNIEIEAKNYLDEEKEVLSIEDALKGARDIIAELVSDDAKIRKYI
HCHHHHHHHHHHCCCCCEEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
RELALREGMIVSKSATDEKSVYDMYYDYSEAVKSMAPHRVLAINRGEKESFLKVKLEINN
HHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEEECC
DKVLNYIINEYVNDKNFKNKEEIVSSIEDSYKRLIFPSIEREIRNHLTEIAQERAISVFG
CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
KNVKSLLLQPPVKDKVVMGFDPAFRTGCKIAVVDKNGKLLDYTTVYPTDPQNDVEGAKKV
HHHHHHHCCCCCCCCEEECCCHHHHCCCEEEEECCCCCEEEEEEECCCCCCHHHHHHHHH
LKGLIEKYDIDIISIGNGTASRESETFVSEMIKEIDSEVQYVIVSEAGASVYSASELANE
HHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCC
EHPDINVSIRGAISIARRLQDPLAELVKIDPKSIGVGQYQHDLNKKRLEEVLDGVVEDSV
CCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHCH
NSVGVDLNTASYSLLEHVAGISKAIAKNIIAYREENGDFTSRAQLKKVKRLGPQAFTQCA
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHH
GFMRILEGKNPLDNTGVHPESYDICKKMIEIIGYSLDDVKNKNIGEIDEKIKEIGLRELS
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHH
EKLEVGQVTLKDIIAEIKKPGRDPREEGIKPILRTDVLKIEDIQEGMTLKGTIRNVVDFG
HHHHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
AFVDIGIKNDGLVHKSEMSNSFVKDPMSIVTVGDIVDVKVIGIDLNKKRVALSMKK
CEEEEECCCCCCEEHHHHCCHHHHCCHHEEEECCEEEEEEEEEECCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]