| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is secE [C]
Identifier: 126697626
GI number: 126697626
Start: 85342
End: 85563
Strand: Direct
Name: secE [C]
Synonym: CD0059
Alternate gene names: 126697626
Gene position: 85342-85563 (Clockwise)
Preceding gene: 126697625
Following gene: 126697627
Centisome position: 1.99
GC content: 30.63
Gene sequence:
>222_bases ATGGCTGCCCAAAAAAATGACGGTGCAAAAACTAAAAAAAGGTTTAGTTTGTTTGGATACTTAAAAGAAACTAAACAAGA ATTAAAAAGAGTTACATGGCCGACAAAAAAGGAACTGTTTAAAAACACAAGTATAGTTTTAACTGTAGTTATTTCATGCA CTATATTAGTATGGGGTATAGACACTATATTATCTGGTGCACTAGCGTTATTACTAAAATAG
Upstream 100 bases:
>100_bases AATCCAGACAGAATAGAATTACAAAAATATTGTAGATTCTGTAAAAAGCATACAACTCATAAAGAAACAAAATAGTTTTT TATAAGGATGTGAGTATGGA
Downstream 100 bases:
>100_bases ACGAAAAGAGGTAAGTTAAATGTCAGAATTACAAGAAGCAAGTTGGTATGTAGTTCATACCTATTCGGGACATGAAAATA AAGTTAAAGCTACAATTGAG
Product: preprotein translocase SecE subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 73; Mature: 72
Protein sequence:
>73_residues MAAQKNDGAKTKKRFSLFGYLKETKQELKRVTWPTKKELFKNTSIVLTVVISCTILVWGIDTILSGALALLLK
Sequences:
>Translated_73_residues MAAQKNDGAKTKKRFSLFGYLKETKQELKRVTWPTKKELFKNTSIVLTVVISCTILVWGIDTILSGALALLLK >Mature_72_residues AAQKNDGAKTKKRFSLFGYLKETKQELKRVTWPTKKELFKNTSIVLTVVISCTILVWGIDTILSGALALLLK
Specific function: Essential For Protein Export. [C]
COG id: COG0690
COG function: function code U; Preprotein translocase subunit SecE
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 8198; Mature: 8067
Theoretical pI: Translated: 10.75; Mature: 10.75
Prosite motif: PS01067 SECE_SEC61G
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAQKNDGAKTKKRFSLFGYLKETKQELKRVTWPTKKELFKNTSIVLTVVISCTILVWGI CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHH DTILSGALALLLK HHHHHHHHHHHCC >Mature Secondary Structure AAQKNDGAKTKKRFSLFGYLKETKQELKRVTWPTKKELFKNTSIVLTVVISCTILVWGI CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHH DTILSGALALLLK HHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA