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The map label for this gene is mrnC [H]

Identifier: 126697619

GI number: 126697619

Start: 80399

End: 80794

Strand: Direct

Name: mrnC [H]

Synonym: CD0053

Alternate gene names: 126697619

Gene position: 80399-80794 (Clockwise)

Preceding gene: 126697618

Following gene: 126697620

Centisome position: 1.87

GC content: 27.53

Gene sequence:

>396_bases
ATGGAAAAAACTGAATTAGTTACTATGTCACCATTAGTTTTAGCATACTTAGGTGATACAGTGTATGAGACATATATAAG
AGAATATTTAATTAGACAGAATACACAAAGAAAAGTTAATGATTTGCATAAACTAGCTATAAAGTATGTAAAAGCTAAAG
CTCAGGCAACTATAATTCATGAAATTGAAATTGAGTTAACTGAAGAAGAGAGTAAAATTTATAAAAGGGGAAGAAATCAA
AAGTCAAATACTTCTCCTAAGAATGCAGATATTATAGACTACAAACATGCAACTGGGTTTGAGGCATTAGTGGGATATTT
GTATTTAAATAATGAAATAGAGAGACTTCAATATATTATCAATAAAGGAATCAAAATTATTGAAAGAGATATGTAA

Upstream 100 bases:

>100_bases
AAGAGTTTCAATTAGCTGATGATATTAGACAACAATTACTAGATATGGGAATTGTATTAGAAGACACAAGACAAGGTGTT
AAGTGGAAAAGGATATAAAA

Downstream 100 bases:

>100_bases
ATATTAAAGAGTGTTGTCTTAATAATAAGTAATAAGGCAACACTTTTTTTATAACTAATGTATAATAAATATATAGAAAT
TAGTAATGAGAAAGGATAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MEKTELVTMSPLVLAYLGDTVYETYIREYLIRQNTQRKVNDLHKLAIKYVKAKAQATIIHEIEIELTEEESKIYKRGRNQ
KSNTSPKNADIIDYKHATGFEALVGYLYLNNEIERLQYIINKGIKIIERDM

Sequences:

>Translated_131_residues
MEKTELVTMSPLVLAYLGDTVYETYIREYLIRQNTQRKVNDLHKLAIKYVKAKAQATIIHEIEIELTEEESKIYKRGRNQ
KSNTSPKNADIIDYKHATGFEALVGYLYLNNEIERLQYIINKGIKIIERDM
>Mature_131_residues
MEKTELVTMSPLVLAYLGDTVYETYIREYLIRQNTQRKVNDLHKLAIKYVKAKAQATIIHEIEIELTEEESKIYKRGRNQ
KSNTSPKNADIIDYKHATGFEALVGYLYLNNEIERLQYIINKGIKIIERDM

Specific function: Might be an RNase involved in RNA processing [H]

COG id: COG1939

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RNase III domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000999
- InterPro:   IPR008226 [H]

Pfam domain/function: PF00636 Ribonuclease_3 [H]

EC number: NA

Molecular weight: Translated: 15368; Mature: 15368

Theoretical pI: Translated: 8.69; Mature: 8.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKTELVTMSPLVLAYLGDTVYETYIREYLIRQNTQRKVNDLHKLAIKYVKAKAQATIIH
CCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEEEE
EIEIELTEEESKIYKRGRNQKSNTSPKNADIIDYKHATGFEALVGYLYLNNEIERLQYII
EEEEEEEHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHCCHHHHHHHHH
NKGIKIIERDM
HCCHHHHHCCC
>Mature Secondary Structure
MEKTELVTMSPLVLAYLGDTVYETYIREYLIRQNTQRKVNDLHKLAIKYVKAKAQATIIH
CCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEEEE
EIEIELTEEESKIYKRGRNQKSNTSPKNADIIDYKHATGFEALVGYLYLNNEIERLQYII
EEEEEEEHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHCCHHHHHHHHH
NKGIKIIERDM
HCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]