| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
Click here to switch to the map view.
The map label for this gene is fusA [H]
Identifier: 126697588
GI number: 126697588
Start: 38528
End: 40468
Strand: Direct
Name: fusA [H]
Synonym: CD0022
Alternate gene names: 126697588
Gene position: 38528-40468 (Clockwise)
Preceding gene: 126697587
Following gene: 126697589
Centisome position: 0.9
GC content: 30.76
Gene sequence:
>1941_bases GTGGGTGCTTATATGAAGGTTTATGATAGTAAAATGTTGAGAAATGTAGCGGTATTAGGACATAGCGGATGTGGAAAAAC AAATCTAATCGAAACTATAGCTTACACAGCAAACACTAATAAGATACCTAAATTAACAGACAAGGTAAATATGACTTATA GCATGGGATTAATACCTATAGAGTATAATGATTATAAGTTTAACTTATTGGATACCCCAGGATATTTTGACTTTAGCGGA GACGTTGTGTCATCTCTTAGAGCAAGTGATGCAGCAATAATAGTAATAGATGCAACAGCGCCTATTCAAGTTGGTACAGA GAAATCATTAGAACTAACTGAGAGTATTCCTAAGATAATGTTTATAAATAAAATAGATAATGAAAAGGCAAGATACAAAG ATGCAATAGCAATGTTAAGAGAAAAATACAATAATAAGATAGTTCCTATGATAAGTCCTATATACAAAGATAAAAACTTT GTAAAGTTACATAATGTTTTTGAAAACATAGATGATTTAGAAGGTGAATTTAAGGAACAAGCTATGAGTGTTAAAGAAGC ATTAATGGAACTTATAGCAGAAACTGATGACCAAATATTAGATAAATATTTTAATGGAGAAGAACTAACTACAGAAGAGA TACAAAAAGGTATTATTATAGGTATACAAAGAGGTGATATTATACCTGTAATATGTGGTTCAACTATAAATAATATAGGC ACAAAGGAAATATTAGATACAATATCAAGTTATTTAGAACCTATCTTTACAGAGGAAAGCAAACCATTTAGGGGATTAGT ATTTAAAACTATGGTTGACCCATTTGTTGGAAAGATGTCATATATAAAAATTACTGAGGGTGTACTTTCTAAGGATAAAG ATGTTTTTAATATAAATAAAAATGTAAAAGAAAAAATAGCTAATATATATACATTGAGAAATAGTGAATTAGTAGAAATA GAAAAAGCTAAAGCTGGTGATATAGTAGTTATAACTAAAGTTAATTCTCTAAAAACAGGAGACACTATATCTGCAGATAA AGATGCAGAAGCTTTAGAAAAGATAGATTTTCCTAAACCACAAATATATTATGCAGTAACTCCTAAGAATAAAGGTGATG AAGAAAAAGTAGCATCTGTATTAAATAAACTAGTAGAAGAGGACCCTACATTACATTGGTATAGAAATACAGAGACAAAA CAAGCACTTTTAGGAGGTCAAGGAGAACTTCATATAAAAACAATTAAAAATAAAATGAAAGATAAGTTTGGTGTTGATGT TGAATTGAATGACCTTAAAGTTCCTTATAGAGAAACTATAAAAGGAACAGCTGATGTACAAGGAAAACATAAAAAGCAAT CAGGTGGTCATGGTCAATATGGAGACGTAAAAATAAGATTTGAAAGATGTGAATCTGATTTTGAATTTACAGAAGAAATA TTTGGTGGTTCTGTACCAAAACAATATATACCAGCAGTTGAAAAAGGTTTAAAAGACTCTATGCAAAAAGGTATATTAGC AGGATATCCTGTTACAAACATAAAAGCTACGCTTTATGATGGTTCATACCATGATGTAGACTCTTCTGAAATGGCCTTTA AAATGGCAGCAAGTGCAGCCTTTAAAAAAGGTATGGAAGAAGCACACCCAATACTACTAGAACCTATAATGAAACTTAAG ATAACTGTTCCAGAAGAATATATGGGAGATGTCATGGGTGATATAAATAAGAGAAGAGGAAAAATATTTGGAATGGAACC AGATGACAAAGGGAAACAAATAATATTTGCAGAAGCTCCACAAGCAGAGACATTTAAATATGCAATAGATTTAAGAGCAA TGACACAAGGTAGAGGATACTTTGAAATGGAATTAGAGAGATATGGAGAGGTTCCATCACAGTTTGCAGAAAAAATAATT GGGCTAGCTACTGCAAAGTAA
Upstream 100 bases:
>100_bases TAGTAAGGAAAATGTTATCTAAAAATTCTAAATATAGTAAATATTTTCCATAATATTTCTTAGGAAATAACAGCAAAGAT AAAATACATAAATTTAAAAG
Downstream 100 bases:
>100_bases TGAACAAAATAAATAGAAAAATAATTAATATATATTATTAAAAATATTTTTAGGGTTTTAACTAGGTATAGGTTTATGTT AGGTAAACTTATACCTAGTT
Product: translation elongation factor
Products: GDP; phosphate
Alternate protein names: EF-G [H]
Number of amino acids: Translated: 646; Mature: 645
Protein sequence:
>646_residues MGAYMKVYDSKMLRNVAVLGHSGCGKTNLIETIAYTANTNKIPKLTDKVNMTYSMGLIPIEYNDYKFNLLDTPGYFDFSG DVVSSLRASDAAIIVIDATAPIQVGTEKSLELTESIPKIMFINKIDNEKARYKDAIAMLREKYNNKIVPMISPIYKDKNF VKLHNVFENIDDLEGEFKEQAMSVKEALMELIAETDDQILDKYFNGEELTTEEIQKGIIIGIQRGDIIPVICGSTINNIG TKEILDTISSYLEPIFTEESKPFRGLVFKTMVDPFVGKMSYIKITEGVLSKDKDVFNINKNVKEKIANIYTLRNSELVEI EKAKAGDIVVITKVNSLKTGDTISADKDAEALEKIDFPKPQIYYAVTPKNKGDEEKVASVLNKLVEEDPTLHWYRNTETK QALLGGQGELHIKTIKNKMKDKFGVDVELNDLKVPYRETIKGTADVQGKHKKQSGGHGQYGDVKIRFERCESDFEFTEEI FGGSVPKQYIPAVEKGLKDSMQKGILAGYPVTNIKATLYDGSYHDVDSSEMAFKMAASAAFKKGMEEAHPILLEPIMKLK ITVPEEYMGDVMGDINKRRGKIFGMEPDDKGKQIIFAEAPQAETFKYAIDLRAMTQGRGYFEMELERYGEVPSQFAEKII GLATAK
Sequences:
>Translated_646_residues MGAYMKVYDSKMLRNVAVLGHSGCGKTNLIETIAYTANTNKIPKLTDKVNMTYSMGLIPIEYNDYKFNLLDTPGYFDFSG DVVSSLRASDAAIIVIDATAPIQVGTEKSLELTESIPKIMFINKIDNEKARYKDAIAMLREKYNNKIVPMISPIYKDKNF VKLHNVFENIDDLEGEFKEQAMSVKEALMELIAETDDQILDKYFNGEELTTEEIQKGIIIGIQRGDIIPVICGSTINNIG TKEILDTISSYLEPIFTEESKPFRGLVFKTMVDPFVGKMSYIKITEGVLSKDKDVFNINKNVKEKIANIYTLRNSELVEI EKAKAGDIVVITKVNSLKTGDTISADKDAEALEKIDFPKPQIYYAVTPKNKGDEEKVASVLNKLVEEDPTLHWYRNTETK QALLGGQGELHIKTIKNKMKDKFGVDVELNDLKVPYRETIKGTADVQGKHKKQSGGHGQYGDVKIRFERCESDFEFTEEI FGGSVPKQYIPAVEKGLKDSMQKGILAGYPVTNIKATLYDGSYHDVDSSEMAFKMAASAAFKKGMEEAHPILLEPIMKLK ITVPEEYMGDVMGDINKRRGKIFGMEPDDKGKQIIFAEAPQAETFKYAIDLRAMTQGRGYFEMELERYGEVPSQFAEKII GLATAK >Mature_645_residues GAYMKVYDSKMLRNVAVLGHSGCGKTNLIETIAYTANTNKIPKLTDKVNMTYSMGLIPIEYNDYKFNLLDTPGYFDFSGD VVSSLRASDAAIIVIDATAPIQVGTEKSLELTESIPKIMFINKIDNEKARYKDAIAMLREKYNNKIVPMISPIYKDKNFV KLHNVFENIDDLEGEFKEQAMSVKEALMELIAETDDQILDKYFNGEELTTEEIQKGIIIGIQRGDIIPVICGSTINNIGT KEILDTISSYLEPIFTEESKPFRGLVFKTMVDPFVGKMSYIKITEGVLSKDKDVFNINKNVKEKIANIYTLRNSELVEIE KAKAGDIVVITKVNSLKTGDTISADKDAEALEKIDFPKPQIYYAVTPKNKGDEEKVASVLNKLVEEDPTLHWYRNTETKQ ALLGGQGELHIKTIKNKMKDKFGVDVELNDLKVPYRETIKGTADVQGKHKKQSGGHGQYGDVKIRFERCESDFEFTEEIF GGSVPKQYIPAVEKGLKDSMQKGILAGYPVTNIKATLYDGSYHDVDSSEMAFKMAASAAFKKGMEEAHPILLEPIMKLKI TVPEEYMGDVMGDINKRRGKIFGMEPDDKGKQIIFAEAPQAETFKYAIDLRAMTQGRGYFEMELERYGEVPSQFAEKIIG LATAK
Specific function: Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and
COG id: COG0480
COG function: function code J; Translation elongation factors (GTPases)
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GTP-binding elongation factor family. EF-G/EF-2 subfamily [H]
Homologues:
Organism=Homo sapiens, GI18390331, Length=696, Percent_Identity=28.448275862069, Blast_Score=311, Evalue=2e-84, Organism=Homo sapiens, GI19923640, Length=701, Percent_Identity=26.3908701854494, Blast_Score=246, Evalue=6e-65, Organism=Homo sapiens, GI25306287, Length=687, Percent_Identity=25.0363901018923, Blast_Score=214, Evalue=2e-55, Organism=Homo sapiens, GI25306283, Length=379, Percent_Identity=26.9129287598945, Blast_Score=133, Evalue=7e-31, Organism=Escherichia coli, GI1789738, Length=692, Percent_Identity=35.1156069364162, Blast_Score=417, Evalue=1e-117, Organism=Escherichia coli, GI1790835, Length=458, Percent_Identity=22.9257641921397, Blast_Score=94, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17533571, Length=678, Percent_Identity=28.9085545722714, Blast_Score=299, Evalue=3e-81, Organism=Caenorhabditis elegans, GI17556745, Length=685, Percent_Identity=21.8978102189781, Blast_Score=163, Evalue=3e-40, Organism=Saccharomyces cerevisiae, GI6323098, Length=687, Percent_Identity=28.3842794759825, Blast_Score=285, Evalue=2e-77, Organism=Saccharomyces cerevisiae, GI6322359, Length=781, Percent_Identity=24.583866837388, Blast_Score=202, Evalue=2e-52, Organism=Drosophila melanogaster, GI24582462, Length=691, Percent_Identity=29.3777134587554, Blast_Score=332, Evalue=6e-91, Organism=Drosophila melanogaster, GI221458488, Length=700, Percent_Identity=23.7142857142857, Blast_Score=198, Evalue=9e-51,
Paralogues:
None
Copy number: 1080 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2520 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 7984 Molecules/Cell In: Growth Phase, Gl
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009022 - InterPro: IPR000795 - InterPro: IPR020568 - InterPro: IPR014721 - InterPro: IPR005225 - InterPro: IPR004540 - InterPro: IPR000640 - InterPro: IPR005517 - InterPro: IPR004161 - InterPro: IPR009000 [H]
Pfam domain/function: PF00679 EFG_C; PF03764 EFG_IV; PF00009 GTP_EFTU; PF03144 GTP_EFTU_D2 [H]
EC number: 3.6.5.3
Molecular weight: Translated: 72453; Mature: 72322
Theoretical pI: Translated: 5.27; Mature: 5.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGAYMKVYDSKMLRNVAVLGHSGCGKTNLIETIAYTANTNKIPKLTDKVNMTYSMGLIPI CCCHHHHHHHHHHHHHHHEECCCCCCCHHHHHHEEECCCCCCCCCHHHCCEEEEEEEEEE EYNDYKFNLLDTPGYFDFSGDVVSSLRASDAAIIVIDATAPIQVGTEKSLELTESIPKIM EECCEEEEEECCCCCCCCCHHHHHHHCCCCCEEEEEECCCCEEECCCCCHHHHHCCCCEE FINKIDNEKARYKDAIAMLREKYNNKIVPMISPIYKDKNFVKLHNVFENIDDLEGEFKEQ EEECCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH AMSVKEALMELIAETDDQILDKYFNGEELTTEEIQKGIIIGIQRGDIIPVICGSTINNIG HHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHCCCEEEEEECCCEEEEECCCCCCCCC TKEILDTISSYLEPIFTEESKPFRGLVFKTMVDPFVGKMSYIKITEGVLSKDKDVFNINK HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCEEEEEEEHHHHCCCCCEEECCH NVKEKIANIYTLRNSELVEIEKAKAGDIVVITKVNSLKTGDTISADKDAEALEKIDFPKP HHHHHHHHHEEECCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCC QIYYAVTPKNKGDEEKVASVLNKLVEEDPTLHWYRNTETKQALLGGQGELHIKTIKNKMK EEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCEEHHHHHHHHH DKFGVDVELNDLKVPYRETIKGTADVQGKHKKQSGGHGQYGDVKIRFERCESDFEFTEEI HHHCCCEEECCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHH FGGSVPKQYIPAVEKGLKDSMQKGILAGYPVTNIKATLYDGSYHDVDSSEMAFKMAASAA HCCCCCHHHHHHHHHHHHHHHHCCCEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHH FKKGMEEAHPILLEPIMKLKITVPEEYMGDVMGDINKRRGKIFGMEPDDKGKQIIFAEAP HHHCHHHCCCHHHCCHHEEEEECCHHHHHHHHHHHHHHCCEEECCCCCCCCCEEEEECCC QAETFKYAIDLRAMTQGRGYFEMELERYGEVPSQFAEKIIGLATAK CCCEEEEEEEEEEHHCCCCEEEEEHHHHCCCHHHHHHHHHHHHCCC >Mature Secondary Structure GAYMKVYDSKMLRNVAVLGHSGCGKTNLIETIAYTANTNKIPKLTDKVNMTYSMGLIPI CCHHHHHHHHHHHHHHHEECCCCCCCHHHHHHEEECCCCCCCCCHHHCCEEEEEEEEEE EYNDYKFNLLDTPGYFDFSGDVVSSLRASDAAIIVIDATAPIQVGTEKSLELTESIPKIM EECCEEEEEECCCCCCCCCHHHHHHHCCCCCEEEEEECCCCEEECCCCCHHHHHCCCCEE FINKIDNEKARYKDAIAMLREKYNNKIVPMISPIYKDKNFVKLHNVFENIDDLEGEFKEQ EEECCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH AMSVKEALMELIAETDDQILDKYFNGEELTTEEIQKGIIIGIQRGDIIPVICGSTINNIG HHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHCCCEEEEEECCCEEEEECCCCCCCCC TKEILDTISSYLEPIFTEESKPFRGLVFKTMVDPFVGKMSYIKITEGVLSKDKDVFNINK HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCEEEEEEEHHHHCCCCCEEECCH NVKEKIANIYTLRNSELVEIEKAKAGDIVVITKVNSLKTGDTISADKDAEALEKIDFPKP HHHHHHHHHEEECCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCC QIYYAVTPKNKGDEEKVASVLNKLVEEDPTLHWYRNTETKQALLGGQGELHIKTIKNKMK EEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCEEHHHHHHHHH DKFGVDVELNDLKVPYRETIKGTADVQGKHKKQSGGHGQYGDVKIRFERCESDFEFTEEI HHHCCCEEECCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHH FGGSVPKQYIPAVEKGLKDSMQKGILAGYPVTNIKATLYDGSYHDVDSSEMAFKMAASAA HCCCCCHHHHHHHHHHHHHHHHCCCEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHH FKKGMEEAHPILLEPIMKLKITVPEEYMGDVMGDINKRRGKIFGMEPDDKGKQIIFAEAP HHHCHHHCCCHHHCCHHEEEEECCHHHHHHHHHHHHHHCCEEECCCCCCCCCEEEEECCC QAETFKYAIDLRAMTQGRGYFEMELERYGEVPSQFAEKIIGLATAK CCCEEEEEEEEEEHHCCCCEEEEEHHHHCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: GTP; H2O
Specific reaction: GTP + H2O = GDP + phosphate
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA