| Definition | Prochlorococcus marinus str. MIT 9301, complete genome. |
|---|---|
| Accession | NC_009091 |
| Length | 1,641,879 |
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The map label for this gene is sam1
Identifier: 126697155
GI number: 126697155
Start: 1537826
End: 1539244
Strand: Reverse
Name: sam1
Synonym: P9301_18171
Alternate gene names: 126697155
Gene position: 1539244-1537826 (Counterclockwise)
Preceding gene: 126697157
Following gene: 126697154
Centisome position: 93.75
GC content: 34.95
Gene sequence:
>1419_bases ATGGTTATTGCAAATTCAGTTAAAACATCAACACCGAAATTCATCATTTCTGATATTTCACTATCAGATTTTGGTCGTAA AGAAATTAAAATTGCCGAAACTGAAATGCCAGGATTAATGGCACTTAGAGATAAATATCAATCTGAAAAGCCATTGAAAG GTGCAAAAATAGCTGGAAGCCTTCATATGACTATTCAGACAGCAGTCTTAATAGAAACTCTTGTTGATCTTGGTGCAGAA GTGAAATGGGCTTCATGCAATATTTTTTCAACTCAAGATCATGCAGCTGCAGCAATCGCAGATCAAGGAATTTCTGTATT TGCAAAAAAAGGTGAGACTCTGGATGAATATTGGCAATATACCCACTATATCCTTGATTGGGGTTCAGACTTCCCAAATA TGATTCTTGATGATGGGGGGGATGCAACTGGTTTATTGATACTAGGTAGTAAAGCAGAAAAAGATTTATCTGTTTTAGAT AACCCGAGTAACGAAGAAGAAATTGCTTTATTCAACTCTATTAAGTCTAAGTTGAAAAATGATGGTGAATTCTATTCTAG AATTAAGAGTAATATCATTGGTGTCACTGAAGAAACTACAACTGGAGTAGCAAGACTTTATCAACTTCAAAAGCAAAATG CTTTACCTTTCCCAGCTATAAACGTTAATGATTCAGTGACAAAAAGCAAATTTGATAATTTATATGGCTGCCGAGAATCT TTAGTTGATAGTATCAAGCGTGCCACCGATGTAATGATTGCTGGAAAAACTGCATTAGTAATGGGTTTTGGAGATGTAGG TAAAGGTTCAGCACAGTCATTGAGAGGACTTGGTGCCATTGTAAAAGTTGCAGAAATTGATCCAATTTGTGCCCTTCAAG CAGCCATGGAAGGTTACAGCGTTGTCAGGTTAGAAGATGTTGTTGAAGATATAGATATATTTGTTACGGCCACTGGTAAC TATCAGGTAATAACCCATGAAAATCTAGTCAAAATGAAGGATGAGGCTATAGTTTGCAATATTGGGCATTTTGATAATGA GATTGATGTTGCCTCTTTAAAGAATTATCAATGGGAAAATATTAAGCCGCAGGTTGATCATATAACTTTACCGAGCGGAA ATAAAATTATTCTTTTAGCAGAAGGTAGATTAGTTAACCTAGGCTGTGCAACTGGGCATCCAAGTTTTGTTATGAGTAAT TCGTTCACTAACCAAGTATTAGCTCAAATTGAACTTTTTAATAAGTCGGAGCAATATGCTAAAGAAGTTTATGTTCTACC AAAACATCTTGATGAAATGGTGGCCAGATTACATTTAGATAAAATAGGGGCAAAATTAACAAAATTAACTAAAGAACAGG CTGATTATATTAGTGTTTCGGTTGAGGGACCATATAAATCAGAATTTTATAGATACTAA
Upstream 100 bases:
>100_bases AGAGTTTTATTCCTAAATTTAAAGTCTCTTTTAAATTCTCAACAAACACAAAATTATGCAAAAATCACTTATAGTTTAAT GGGTATAGATTCCGATAGAA
Downstream 100 bases:
>100_bases GTTTGAACTTAATTTTTGTAAATTTTCTTACCTCGATTCCCGATTATATAAGTTTGGCGGTTGAGAAGAATTCTGCTGTT GCATACCTTACTATATGTTT
Product: S-adenosyl-L-homocysteine hydrolase
Products: NA
Alternate protein names: S-adenosyl-L-homocysteine hydrolase; AdoHcyase
Number of amino acids: Translated: 472; Mature: 472
Protein sequence:
>472_residues MVIANSVKTSTPKFIISDISLSDFGRKEIKIAETEMPGLMALRDKYQSEKPLKGAKIAGSLHMTIQTAVLIETLVDLGAE VKWASCNIFSTQDHAAAAIADQGISVFAKKGETLDEYWQYTHYILDWGSDFPNMILDDGGDATGLLILGSKAEKDLSVLD NPSNEEEIALFNSIKSKLKNDGEFYSRIKSNIIGVTEETTTGVARLYQLQKQNALPFPAINVNDSVTKSKFDNLYGCRES LVDSIKRATDVMIAGKTALVMGFGDVGKGSAQSLRGLGAIVKVAEIDPICALQAAMEGYSVVRLEDVVEDIDIFVTATGN YQVITHENLVKMKDEAIVCNIGHFDNEIDVASLKNYQWENIKPQVDHITLPSGNKIILLAEGRLVNLGCATGHPSFVMSN SFTNQVLAQIELFNKSEQYAKEVYVLPKHLDEMVARLHLDKIGAKLTKLTKEQADYISVSVEGPYKSEFYRY
Sequences:
>Translated_472_residues MVIANSVKTSTPKFIISDISLSDFGRKEIKIAETEMPGLMALRDKYQSEKPLKGAKIAGSLHMTIQTAVLIETLVDLGAE VKWASCNIFSTQDHAAAAIADQGISVFAKKGETLDEYWQYTHYILDWGSDFPNMILDDGGDATGLLILGSKAEKDLSVLD NPSNEEEIALFNSIKSKLKNDGEFYSRIKSNIIGVTEETTTGVARLYQLQKQNALPFPAINVNDSVTKSKFDNLYGCRES LVDSIKRATDVMIAGKTALVMGFGDVGKGSAQSLRGLGAIVKVAEIDPICALQAAMEGYSVVRLEDVVEDIDIFVTATGN YQVITHENLVKMKDEAIVCNIGHFDNEIDVASLKNYQWENIKPQVDHITLPSGNKIILLAEGRLVNLGCATGHPSFVMSN SFTNQVLAQIELFNKSEQYAKEVYVLPKHLDEMVARLHLDKIGAKLTKLTKEQADYISVSVEGPYKSEFYRY >Mature_472_residues MVIANSVKTSTPKFIISDISLSDFGRKEIKIAETEMPGLMALRDKYQSEKPLKGAKIAGSLHMTIQTAVLIETLVDLGAE VKWASCNIFSTQDHAAAAIADQGISVFAKKGETLDEYWQYTHYILDWGSDFPNMILDDGGDATGLLILGSKAEKDLSVLD NPSNEEEIALFNSIKSKLKNDGEFYSRIKSNIIGVTEETTTGVARLYQLQKQNALPFPAINVNDSVTKSKFDNLYGCRES LVDSIKRATDVMIAGKTALVMGFGDVGKGSAQSLRGLGAIVKVAEIDPICALQAAMEGYSVVRLEDVVEDIDIFVTATGN YQVITHENLVKMKDEAIVCNIGHFDNEIDVASLKNYQWENIKPQVDHITLPSGNKIILLAEGRLVNLGCATGHPSFVMSN SFTNQVLAQIELFNKSEQYAKEVYVLPKHLDEMVARLHLDKIGAKLTKLTKEQADYISVSVEGPYKSEFYRY
Specific function: May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
COG id: COG0499
COG function: function code H; S-adenosylhomocysteine hydrolase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the adenosylhomocysteinase family
Homologues:
Organism=Homo sapiens, GI9951915, Length=461, Percent_Identity=57.7006507592191, Blast_Score=500, Evalue=1e-141, Organism=Homo sapiens, GI239937451, Length=439, Percent_Identity=58.3143507972665, Blast_Score=479, Evalue=1e-135, Organism=Homo sapiens, GI24308043, Length=462, Percent_Identity=50, Blast_Score=460, Evalue=1e-129, Organism=Homo sapiens, GI195539337, Length=462, Percent_Identity=50, Blast_Score=460, Evalue=1e-129, Organism=Homo sapiens, GI298286489, Length=462, Percent_Identity=50, Blast_Score=459, Evalue=1e-129, Organism=Homo sapiens, GI195539349, Length=462, Percent_Identity=50, Blast_Score=459, Evalue=1e-129, Organism=Homo sapiens, GI21361647, Length=462, Percent_Identity=48.2683982683983, Blast_Score=438, Evalue=1e-123, Organism=Caenorhabditis elegans, GI17506425, Length=469, Percent_Identity=57.3560767590618, Blast_Score=502, Evalue=1e-142, Organism=Saccharomyces cerevisiae, GI6320882, Length=477, Percent_Identity=56.6037735849057, Blast_Score=488, Evalue=1e-138, Organism=Drosophila melanogaster, GI24642172, Length=466, Percent_Identity=59.4420600858369, Blast_Score=513, Evalue=1e-146, Organism=Drosophila melanogaster, GI24656245, Length=452, Percent_Identity=50.8849557522124, Blast_Score=455, Evalue=1e-128, Organism=Drosophila melanogaster, GI45553387, Length=461, Percent_Identity=50.1084598698482, Blast_Score=441, Evalue=1e-124, Organism=Drosophila melanogaster, GI45553385, Length=460, Percent_Identity=50, Blast_Score=438, Evalue=1e-123,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): SAHH_PROM0 (A3PFB5)
Other databases:
- EMBL: CP000576 - RefSeq: YP_001092041.1 - ProteinModelPortal: A3PFB5 - SMR: A3PFB5 - STRING: A3PFB5 - GeneID: 4911466 - GenomeReviews: CP000576_GR - KEGG: pmg:P9301_18171 - eggNOG: COG0499 - HOGENOM: HBG352029 - OMA: YWWCTDQ - ProtClustDB: PRK05476 - BioCyc: PMAR167546:P9301ORF_1856-MONOMER - GO: GO:0005737 - GO: GO:0005488 - HAMAP: MF_00563 - InterPro: IPR000043 - InterPro: IPR015878 - InterPro: IPR020082 - PANTHER: PTHR23420 - PIRSF: PIRSF001109 - TIGRFAMs: TIGR00936
Pfam domain/function: PF05221 AdoHcyase; PF00670 AdoHcyase_NAD
EC number: =3.3.1.1
Molecular weight: Translated: 51982; Mature: 51982
Theoretical pI: Translated: 4.97; Mature: 4.97
Prosite motif: PS00738 ADOHCYASE_1; PS00739 ADOHCYASE_2
Important sites: BINDING 64-64 BINDING 138-138 BINDING 198-198 BINDING 228-228 BINDING 232-232 BINDING 233-233 BINDING 285-285 BINDING 320-320 BINDING 386-386
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVIANSVKTSTPKFIISDISLSDFGRKEIKIAETEMPGLMALRDKYQSEKPLKGAKIAGS CEEECCCCCCCCCEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEECE LHMTIQTAVLIETLVDLGAEVKWASCNIFSTQDHAAAAIADQGISVFAKKGETLDEYWQY EEHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHCCCCEEECCCCCHHHHHHH THYILDWGSDFPNMILDDGGDATGLLILGSKAEKDLSVLDNPSNEEEIALFNSIKSKLKN HHHEEECCCCCCCCEEECCCCEEEEEEECCCCCCCHHHHCCCCCCHHHHHHHHHHHHHCC DGEFYSRIKSNIIGVTEETTTGVARLYQLQKQNALPFPAINVNDSVTKSKFDNLYGCRES CHHHHHHHHHHEECCCCCHHHHHHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHH LVDSIKRATDVMIAGKTALVMGFGDVGKGSAQSLRGLGAIVKVAEIDPICALQAAMEGYS HHHHHHHHHHEEEECCEEEEEECCCCCCCCHHHHHHHHHHEEEECCCCHHHHHHHHCCCE VVRLEDVVEDIDIFVTATGNYQVITHENLVKMKDEAIVCNIGHFDNEIDVASLKNYQWEN EEEHHHHHCCCEEEEEECCCEEEEECCCCEEECCCEEEEECCCCCCCCCHHHHCCCCCCC IKPQVDHITLPSGNKIILLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELFNKSEQYA CCCCCCEEECCCCCEEEEEECCEEEEEEECCCCCCEEEECCHHHHHHHHHHHHCCCHHHH KEVYVLPKHLDEMVARLHLDKIGAKLTKLTKEQADYISVSVEGPYKSEFYRY HHHEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC >Mature Secondary Structure MVIANSVKTSTPKFIISDISLSDFGRKEIKIAETEMPGLMALRDKYQSEKPLKGAKIAGS CEEECCCCCCCCCEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEECE LHMTIQTAVLIETLVDLGAEVKWASCNIFSTQDHAAAAIADQGISVFAKKGETLDEYWQY EEHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHCCCCEEECCCCCHHHHHHH THYILDWGSDFPNMILDDGGDATGLLILGSKAEKDLSVLDNPSNEEEIALFNSIKSKLKN HHHEEECCCCCCCCEEECCCCEEEEEEECCCCCCCHHHHCCCCCCHHHHHHHHHHHHHCC DGEFYSRIKSNIIGVTEETTTGVARLYQLQKQNALPFPAINVNDSVTKSKFDNLYGCRES CHHHHHHHHHHEECCCCCHHHHHHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHH LVDSIKRATDVMIAGKTALVMGFGDVGKGSAQSLRGLGAIVKVAEIDPICALQAAMEGYS HHHHHHHHHHEEEECCEEEEEECCCCCCCCHHHHHHHHHHEEEECCCCHHHHHHHHCCCE VVRLEDVVEDIDIFVTATGNYQVITHENLVKMKDEAIVCNIGHFDNEIDVASLKNYQWEN EEEHHHHHCCCEEEEEECCCEEEEECCCCEEECCCEEEEECCCCCCCCCHHHHCCCCCCC IKPQVDHITLPSGNKIILLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELFNKSEQYA CCCCCCEEECCCCCEEEEEECCEEEEEEECCCCCCEEEECCHHHHHHHHHHHHCCCHHHH KEVYVLPKHLDEMVARLHLDKIGAKLTKLTKEQADYISVSVEGPYKSEFYRY HHHEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA