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The map label for this gene is rimM

Identifier: 126697136

GI number: 126697136

Start: 1519685

End: 1520224

Strand: Direct

Name: rimM

Synonym: P9301_17981

Alternate gene names: 126697136

Gene position: 1519685-1520224 (Clockwise)

Preceding gene: 126697134

Following gene: 126697139

Centisome position: 92.56

GC content: 28.15

Gene sequence:

>540_bases
ATGATAAATAAAAATGAATGGTTGACTGTTGGATTGATAACATCATGTCATGGAATTAATGGACAGGTAAAGGTTAAATC
TCTAAGTGATTTTGAAGAAAGATTTTTAAAACCTGGAATGCGATGGTTGCAAAAAGAAAATGAACCCCCTTCAAAAATAG
AACTTATATCTGGTTTCAAACAGCCTGGTAAAGAAACCTTCATAGTTAAGTTACAAGGAATAAATACAAGAAATGATGCA
GAGCAACTGAAAACATTTAAAATTCTCGTAAGAACTGACAAACTACCCAAATTAAAAAAGGAAGAATTTCACTTGTTAGA
ACTAATAAATCTCGAGGTCAAGACTTTAGAAAACGATGAATTAAAAACAATTGGGAAAGTTATCAATTTAGAAAATGAGA
AAAATAATTTACTTATTATTGAACTATTTAAAAATCAAAAAAAAGTTCTAATACCATTTGTAAAAGAAATCGTGCCATTA
GTAGATATAAAAAATCAATTTGTAATCATCAATCCTCCAAATGGACTTTTAGAGCTTTAA

Upstream 100 bases:

>100_bases
ATCCTCTGTATATAGAATTAGTGTCTTTTACAACAACAAAAGAACCGGGAAGTATGGGTTTAGTAGATAATTCCATAAAA
CACTCTTTTTAATACAATAT

Downstream 100 bases:

>100_bases
ATTAAAAATATCAAAATTTGCAAGAAGCTAATTATTCCACAGTTACACTTTTAGCTAAATTTCTTGGTTGATCCACGTCA
AGTCCCCTGTGAGCTGCAAT

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MINKNEWLTVGLITSCHGINGQVKVKSLSDFEERFLKPGMRWLQKENEPPSKIELISGFKQPGKETFIVKLQGINTRNDA
EQLKTFKILVRTDKLPKLKKEEFHLLELINLEVKTLENDELKTIGKVINLENEKNNLLIIELFKNQKKVLIPFVKEIVPL
VDIKNQFVIINPPNGLLEL

Sequences:

>Translated_179_residues
MINKNEWLTVGLITSCHGINGQVKVKSLSDFEERFLKPGMRWLQKENEPPSKIELISGFKQPGKETFIVKLQGINTRNDA
EQLKTFKILVRTDKLPKLKKEEFHLLELINLEVKTLENDELKTIGKVINLENEKNNLLIIELFKNQKKVLIPFVKEIVPL
VDIKNQFVIINPPNGLLEL
>Mature_179_residues
MINKNEWLTVGLITSCHGINGQVKVKSLSDFEERFLKPGMRWLQKENEPPSKIELISGFKQPGKETFIVKLQGINTRNDA
EQLKTFKILVRTDKLPKLKKEEFHLLELINLEVKTLENDELKTIGKVINLENEKNNLLIIELFKNQKKVLIPFVKEIVPL
VDIKNQFVIINPPNGLLEL

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_PROM0 (A3PF96)

Other databases:

- EMBL:   CP000576
- RefSeq:   YP_001092022.1
- ProteinModelPortal:   A3PF96
- STRING:   A3PF96
- GeneID:   4911547
- GenomeReviews:   CP000576_GR
- KEGG:   pmg:P9301_17981
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   TSCHGIN
- ProtClustDB:   PRK00122
- BioCyc:   PMAR167546:P9301ORF_1836-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 20679; Mature: 20679

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINKNEWLTVGLITSCHGINGQVKVKSLSDFEERFLKPGMRWLQKENEPPSKIELISGFK
CCCCCCEEEEEEEEECCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCC
QPGKETFIVKLQGINTRNDAEQLKTFKILVRTDKLPKLKKEEFHLLELINLEVKTLENDE
CCCCEEEEEEEECCCCCCHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHCCEEEECCCCH
LKTIGKVINLENEKNNLLIIELFKNQKKVLIPFVKEIVPLVDIKNQFVIINPPNGLLEL
HHHHHHHHCCCCCCCCEEEEEEECCCCEEEHHHHHHHHHHEECCCCEEEEECCCCCCCC
>Mature Secondary Structure
MINKNEWLTVGLITSCHGINGQVKVKSLSDFEERFLKPGMRWLQKENEPPSKIELISGFK
CCCCCCEEEEEEEEECCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCC
QPGKETFIVKLQGINTRNDAEQLKTFKILVRTDKLPKLKKEEFHLLELINLEVKTLENDE
CCCCEEEEEEEECCCCCCHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHCCEEEECCCCH
LKTIGKVINLENEKNNLLIIELFKNQKKVLIPFVKEIVPLVDIKNQFVIINPPNGLLEL
HHHHHHHHCCCCCCCCEEEEEEECCCCEEEHHHHHHHHHHEECCCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA