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The map label for this gene is rpoZ

Identifier: 126696959

GI number: 126696959

Start: 1355075

End: 1355311

Strand: Reverse

Name: rpoZ

Synonym: P9301_16211

Alternate gene names: 126696959

Gene position: 1355311-1355075 (Counterclockwise)

Preceding gene: 126696961

Following gene: 126696958

Centisome position: 82.55

GC content: 32.91

Gene sequence:

>237_bases
ATGAACATATCTAACAATGCAGGAATTGATTCTAATGATCTTGCAAAGAGAGGTGAGAGCTTGATAAGAAAATCAACTAA
TAGATATTTAACTACAGTCAGAATTGCTTTCAGAGCTAAACAAAGACGTTTTGATGATTTTGATGGCTTATTAGAAGAAT
CAACTATTAAACCCGTTCAAAGGTCAATTATTGAACTAAGTGATGAGCAAGATCAACCAGATTTACTTCCAGGCTAA

Upstream 100 bases:

>100_bases
CATATGAAATTATTTAAATCAATTAAGTTCTTTTTGTAATTTATGTTTTGAAATGGTCGAATAAATTGTAAAATACATCT
TATAGTAAAAAATTTTTTTA

Downstream 100 bases:

>100_bases
TTTTGGTAAAAGACCAAAAAAGATGGAGATTACTTAAAGATTTAAAAAAAGGCAAATTTTGCTTTTTAATTGGTGTAGAC
GATTGGTCAATAGAGTTACA

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 78; Mature: 78

Protein sequence:

>78_residues
MNISNNAGIDSNDLAKRGESLIRKSTNRYLTTVRIAFRAKQRRFDDFDGLLEESTIKPVQRSIIELSDEQDQPDLLPG

Sequences:

>Translated_78_residues
MNISNNAGIDSNDLAKRGESLIRKSTNRYLTTVRIAFRAKQRRFDDFDGLLEESTIKPVQRSIIELSDEQDQPDLLPG
>Mature_78_residues
MNISNNAGIDSNDLAKRGESLIRKSTNRYLTTVRIAFRAKQRRFDDFDGLLEESTIKPVQRSIIELSDEQDQPDLLPG

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_PROM0 (A3PER9)

Other databases:

- EMBL:   CP000576
- RefSeq:   YP_001091845.1
- STRING:   A3PER9
- GeneID:   4911435
- GenomeReviews:   CP000576_GR
- KEGG:   pmg:P9301_16211
- eggNOG:   COG1758
- HOGENOM:   HBG284825
- OMA:   RYRITVQ
- ProtClustDB:   PRK00392
- BioCyc:   PMAR167546:P9301ORF_1653-MONOMER
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110

Pfam domain/function: PF01192 RNA_pol_Rpb6

EC number: =2.7.7.6

Molecular weight: Translated: 8879; Mature: 8879

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNISNNAGIDSNDLAKRGESLIRKSTNRYLTTVRIAFRAKQRRFDDFDGLLEESTIKPVQ
CCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
RSIIELSDEQDQPDLLPG
HHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MNISNNAGIDSNDLAKRGESLIRKSTNRYLTTVRIAFRAKQRRFDDFDGLLEESTIKPVQ
CCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
RSIIELSDEQDQPDLLPG
HHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA