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The map label for this gene is cad [H]

Identifier: 126696529

GI number: 126696529

Start: 1004127

End: 1005524

Strand: Direct

Name: cad [H]

Synonym: P9301_11911

Alternate gene names: 126696529

Gene position: 1004127-1005524 (Clockwise)

Preceding gene: 126696526

Following gene: 126696530

Centisome position: 61.16

GC content: 32.26

Gene sequence:

>1398_bases
ATGAGCATTTCATCTTTTCTAACTAAAAAGTTTTTAAAGTCTTTATTCTTTCCCGCTCACAACAGAGGGGCGGCTCTACC
AAAGAAATTAGTGAGGTTATTAAAAAATCCACCTGGGTATTGGGACTTGCCTGAACTACCAGAGATAGGATCACCACTAT
CCCAAAGCGGATTGATTGCTAAATCTCAAAGAGAATTCTCTGACAAATTTGGGGCCAAAGGATGTTTTTTTGGAGTTAAT
GGAGCTTCCGGATTAATACAATCTGCAGTAATTGCAATGGCAAATCCAGGCGAAAATATCCTGATGCCTAGAAATGTTCA
CATAAGTGTTATAAAAATCTGTGCGATGCAGAATATAAATCCAATATTTTTTGACCTAGAATTCTCAACCAGAACAGGGC
ATTACAAACCAATTACAAAAATTTGGTTGGAAAATGTATTTAAAAAATTAAATTTTGATGAGAATAAAATTGCAGGGGTG
ATTCTTGTAAATCCCTCTTATCAAGGATATGCCGGAGATTTAGAACCTTTAATAGATTGTTGTCATCAGAAAAATTTACC
TGTTTTAGTTGATGAAGCCCATGGTTCTTATTTCCTTTTTTGTGAAAATCTTAATTTACCAAAACCTGCCTTATCATCAA
ACGCTGATTTAGTGGTTAATTCATTGCATAAGTCTCTCAATGGATTAACTCAAACGGCGATACTTTGGTACAAAGGGAAT
CTAATAAATGAAGGTAATTTGATCAAAAGTATTAATTTGTTGCAAACTACTAGTCCAAGTTCATTATTACTTTCTTCTTG
TGAAGAGTCTATAAGGGACTGGCTTAATAAAAAAACTTTATCAAAATATCAAAAAAGAATTTTAGAGGCAAAAAGTATTT
ACAAAAAATTAATTCAAAAAAATATTCCTCTCATAGAAACTCAAGACCCATTAAAAATTGTAGTGAATACCTCTAAGGCT
GGAATTGATGGTTTTACTGCTGATAAATTTTTTTATAGAAATGGCCTTATCGCTGAATTACCAGAAATGATGACTCTCAC
TTTTTGCTTAGGATTTGGAAATCAAAAAGATTTTCTTAATTTATTTGAAAAGTTATGGAAAAAGTTACTATTAAATTCCA
GAAAATCAAAAAGTTTAGAAGTGATCAAATCGCCCTTTAAATTAGTTCAAGCACCCGAAATCGAAATTGGAATTGCTTGG
AGAAGTAAGACTCGGAGTATTCCTTTCTCACAATCATTAAATAAAATATCTGGAGATATTATTTGCCCTTATCCTCCTGG
GATTCCTCTACTAGTTCCTGGCGAAAAAGTGGACATAGATAGGTTTAATTGGATAAATAATCAAAGTTTATGCAACAAAG
ATCTGGTAAATTTTAATATAAAGGTCTTAGAAACATAG

Upstream 100 bases:

>100_bases
ATCTTTTGCTGAATATTTGGAATAAGATTTTTTCATCAAAGTTAAAAAATATCAAAAAAGATTACCACGTAATTCATTCT
ATATATGTAGATAATACTTT

Downstream 100 bases:

>100_bases
CAATTTCATATGAGATTTAAAAGCGGATTACTAATAGGAATTTTTGGTTTAATTGTTGTTTTGTTGGGGGGATGGTTTTT
TACCTTGGCAACTGCGTTGC

Product: Orn/Lys/Arg decarboxylase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 465; Mature: 464

Protein sequence:

>465_residues
MSISSFLTKKFLKSLFFPAHNRGAALPKKLVRLLKNPPGYWDLPELPEIGSPLSQSGLIAKSQREFSDKFGAKGCFFGVN
GASGLIQSAVIAMANPGENILMPRNVHISVIKICAMQNINPIFFDLEFSTRTGHYKPITKIWLENVFKKLNFDENKIAGV
ILVNPSYQGYAGDLEPLIDCCHQKNLPVLVDEAHGSYFLFCENLNLPKPALSSNADLVVNSLHKSLNGLTQTAILWYKGN
LINEGNLIKSINLLQTTSPSSLLLSSCEESIRDWLNKKTLSKYQKRILEAKSIYKKLIQKNIPLIETQDPLKIVVNTSKA
GIDGFTADKFFYRNGLIAELPEMMTLTFCLGFGNQKDFLNLFEKLWKKLLLNSRKSKSLEVIKSPFKLVQAPEIEIGIAW
RSKTRSIPFSQSLNKISGDIICPYPPGIPLLVPGEKVDIDRFNWINNQSLCNKDLVNFNIKVLET

Sequences:

>Translated_465_residues
MSISSFLTKKFLKSLFFPAHNRGAALPKKLVRLLKNPPGYWDLPELPEIGSPLSQSGLIAKSQREFSDKFGAKGCFFGVN
GASGLIQSAVIAMANPGENILMPRNVHISVIKICAMQNINPIFFDLEFSTRTGHYKPITKIWLENVFKKLNFDENKIAGV
ILVNPSYQGYAGDLEPLIDCCHQKNLPVLVDEAHGSYFLFCENLNLPKPALSSNADLVVNSLHKSLNGLTQTAILWYKGN
LINEGNLIKSINLLQTTSPSSLLLSSCEESIRDWLNKKTLSKYQKRILEAKSIYKKLIQKNIPLIETQDPLKIVVNTSKA
GIDGFTADKFFYRNGLIAELPEMMTLTFCLGFGNQKDFLNLFEKLWKKLLLNSRKSKSLEVIKSPFKLVQAPEIEIGIAW
RSKTRSIPFSQSLNKISGDIICPYPPGIPLLVPGEKVDIDRFNWINNQSLCNKDLVNFNIKVLET
>Mature_464_residues
SISSFLTKKFLKSLFFPAHNRGAALPKKLVRLLKNPPGYWDLPELPEIGSPLSQSGLIAKSQREFSDKFGAKGCFFGVNG
ASGLIQSAVIAMANPGENILMPRNVHISVIKICAMQNINPIFFDLEFSTRTGHYKPITKIWLENVFKKLNFDENKIAGVI
LVNPSYQGYAGDLEPLIDCCHQKNLPVLVDEAHGSYFLFCENLNLPKPALSSNADLVVNSLHKSLNGLTQTAILWYKGNL
INEGNLIKSINLLQTTSPSSLLLSSCEESIRDWLNKKTLSKYQKRILEAKSIYKKLIQKNIPLIETQDPLKIVVNTSKAG
IDGFTADKFFYRNGLIAELPEMMTLTFCLGFGNQKDFLNLFEKLWKKLLLNSRKSKSLEVIKSPFKLVQAPEIEIGIAWR
SKTRSIPFSQSLNKISGDIICPYPPGIPLLVPGEKVDIDRFNWINNQSLCNKDLVNFNIKVLET

Specific function: Catalyzes the formation of agmatine from arginine [H]

COG id: COG1982

COG function: function code E; Arginine/lysine/ornithine decarboxylases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Orn/Lys/Arg decarboxylase class-I family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000310
- InterPro:   IPR008286
- InterPro:   IPR015424
- InterPro:   IPR015421 [H]

Pfam domain/function: PF01276 OKR_DC_1; PF03711 OKR_DC_1_C [H]

EC number: =4.1.1.19 [H]

Molecular weight: Translated: 52150; Mature: 52019

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: PS00703 OKR_DC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSISSFLTKKFLKSLFFPAHNRGAALPKKLVRLLKNPPGYWDLPELPEIGSPLSQSGLIA
CCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEE
KSQREFSDKFGAKGCFFGVNGASGLIQSAVIAMANPGENILMPRNVHISVIKICAMQNIN
HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHCCCC
PIFFDLEFSTRTGHYKPITKIWLENVFKKLNFDENKIAGVILVNPSYQGYAGDLEPLIDC
EEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHH
CHQKNLPVLVDEAHGSYFLFCENLNLPKPALSSNADLVVNSLHKSLNGLTQTAILWYKGN
HCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEEECC
LINEGNLIKSINLLQTTSPSSLLLSSCEESIRDWLNKKTLSKYQKRILEAKSIYKKLIQK
EECCCCCEEEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NIPLIETQDPLKIVVNTSKAGIDGFTADKFFYRNGLIAELPEMMTLTFCLGFGNQKDFLN
CCCEEECCCCEEEEEECCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
LFEKLWKKLLLNSRKSKSLEVIKSPFKLVQAPEIEIGIAWRSKTRSIPFSQSLNKISGDI
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHCCCE
ICPYPPGIPLLVPGEKVDIDRFNWINNQSLCNKDLVNFNIKVLET
ECCCCCCCCEEECCCEECCHHHCCCCCCCCCCCCHHEEEEEEEEC
>Mature Secondary Structure 
SISSFLTKKFLKSLFFPAHNRGAALPKKLVRLLKNPPGYWDLPELPEIGSPLSQSGLIA
CHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEE
KSQREFSDKFGAKGCFFGVNGASGLIQSAVIAMANPGENILMPRNVHISVIKICAMQNIN
HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHCCCC
PIFFDLEFSTRTGHYKPITKIWLENVFKKLNFDENKIAGVILVNPSYQGYAGDLEPLIDC
EEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHH
CHQKNLPVLVDEAHGSYFLFCENLNLPKPALSSNADLVVNSLHKSLNGLTQTAILWYKGN
HCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEEECC
LINEGNLIKSINLLQTTSPSSLLLSSCEESIRDWLNKKTLSKYQKRILEAKSIYKKLIQK
EECCCCCEEEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NIPLIETQDPLKIVVNTSKAGIDGFTADKFFYRNGLIAELPEMMTLTFCLGFGNQKDFLN
CCCEEECCCCEEEEEECCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
LFEKLWKKLLLNSRKSKSLEVIKSPFKLVQAPEIEIGIAWRSKTRSIPFSQSLNKISGDI
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHCCCE
ICPYPPGIPLLVPGEKVDIDRFNWINNQSLCNKDLVNFNIKVLET
ECCCCCCCCEEECCCEECCHHHCCCCCCCCCCCCHHEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12721629 [H]