| Definition | Burkholderia pseudomallei 1106a chromosome I, complete genome. |
|---|---|
| Accession | NC_009076 |
| Length | 3,988,455 |
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The map label for this gene is ytfR [C]
Identifier: 126451775
GI number: 126451775
Start: 1633387
End: 1634187
Strand: Reverse
Name: ytfR [C]
Synonym: BURPS1106A_1678
Alternate gene names: 126451775
Gene position: 1634187-1633387 (Counterclockwise)
Preceding gene: 126455364
Following gene: 126452179
Centisome position: 40.97
GC content: 65.29
Gene sequence:
>801_bases ATGTCCACGCCAGCATCCCACGATACGATTCTCGCGCTCGAGAACGTCAGCAAGTATTTCGGCAAGGTGATCGCGCTGTC CGGCGTCACGCTGCGCGTCAAGCGCGGCGAGGTGCATTGCCTGCTCGGCGACAACGGCGCCGGCAAGTCGACACTCATCA AGACGCTCGCGGGCGTGCACCCGCCGTCCGACGGGCAGTATCTCGTCGACGGCAAGCCGGTGCTGTTCGATTCGCCGAAG GACGCGCTCGATCTCGGCATCGCCACCGTCTATCAGGACCTCGCGCTCGTGCCGCTGCTGTCCGTCGCGCGCAATTTCTT CATGGGCCGCGAGCCGCAGAAGAAGCTGTTCGGCCTCTTCAACGTGATGGATCTCGATTCGAGCGCGCGGATCGCCCGCG CGAAGCTCGCGGAGATGGGCATCAACGTGCGCGACGCGCACCAGCCGATCGGCACGATGTCGGGCGGCGAGCGCCAGTGC CTCGCGATCGCGCGCGCGATCCACTTCGGCGCGCGCGTGCTGATCCTCGACGAGCCCACCGCCGCGCTCGGCGTCAAGCA GAGCTTGAACGTGCTCAAGCTGATCCACGCCGCACGCGCGAAAGGCATCTCGGTGATCTTCATCACGCACAACGTGCACC ACGCGTACCCGATCGGCGATTCGTTCACGCTGCTCAACCGGGGCCGCTCGCTCGGCACGTTCACGAAGGACACGATCAGC AAGAACGAGGTGCTCGACATGATGGCGGGCGGCGCCGAGATGCAGAAGATGATCGCCGAACTCGACGGCGCGACCATTTG A
Upstream 100 bases:
>100_bases GGACTGGTTCCGCGTGTTCCTCGGCGTGATGCTGCTCGTCGCCGTGCTGTTCAACCACTACGTGCGCCGCCGCGTGTCGC AGTCGTAACGGAGTACAAGC
Downstream 100 bases:
>100_bases CCCAGGATTCGCGATGACTTCCCCTACCCTTTCCTTTGCGCAGAATCGCCCGCTCGACGTGATCTGCGTCGGCCGCGTCG CCGTCGATCTGTACGCGCAG
Product: carbohydrate ABC transporter ATP-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 266; Mature: 265
Protein sequence:
>266_residues MSTPASHDTILALENVSKYFGKVIALSGVTLRVKRGEVHCLLGDNGAGKSTLIKTLAGVHPPSDGQYLVDGKPVLFDSPK DALDLGIATVYQDLALVPLLSVARNFFMGREPQKKLFGLFNVMDLDSSARIARAKLAEMGINVRDAHQPIGTMSGGERQC LAIARAIHFGARVLILDEPTAALGVKQSLNVLKLIHAARAKGISVIFITHNVHHAYPIGDSFTLLNRGRSLGTFTKDTIS KNEVLDMMAGGAEMQKMIAELDGATI
Sequences:
>Translated_266_residues MSTPASHDTILALENVSKYFGKVIALSGVTLRVKRGEVHCLLGDNGAGKSTLIKTLAGVHPPSDGQYLVDGKPVLFDSPK DALDLGIATVYQDLALVPLLSVARNFFMGREPQKKLFGLFNVMDLDSSARIARAKLAEMGINVRDAHQPIGTMSGGERQC LAIARAIHFGARVLILDEPTAALGVKQSLNVLKLIHAARAKGISVIFITHNVHHAYPIGDSFTLLNRGRSLGTFTKDTIS KNEVLDMMAGGAEMQKMIAELDGATI >Mature_265_residues STPASHDTILALENVSKYFGKVIALSGVTLRVKRGEVHCLLGDNGAGKSTLIKTLAGVHPPSDGQYLVDGKPVLFDSPKD ALDLGIATVYQDLALVPLLSVARNFFMGREPQKKLFGLFNVMDLDSSARIARAKLAEMGINVRDAHQPIGTMSGGERQCL AIARAIHFGARVLILDEPTAALGVKQSLNVLKLIHAARAKGISVIFITHNVHHAYPIGDSFTLLNRGRSLGTFTKDTISK NEVLDMMAGGAEMQKMIAELDGATI
Specific function: Part of an ABC transporter complex involved in carbohydrate import. Could be involved in ribose, galactose and/or methyl galactoside import. Responsible for energy coupling to the transport system [H]
COG id: COG1129
COG function: function code G; ABC-type sugar transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI21536376, Length=225, Percent_Identity=26.6666666666667, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI31657092, Length=228, Percent_Identity=27.6315789473684, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI45446740, Length=227, Percent_Identity=26.8722466960352, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI47078218, Length=227, Percent_Identity=26.8722466960352, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI30795238, Length=272, Percent_Identity=27.2058823529412, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI27881501, Length=272, Percent_Identity=27.2058823529412, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI150417984, Length=206, Percent_Identity=30.5825242718447, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI255708477, Length=220, Percent_Identity=30.4545454545455, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI105990541, Length=228, Percent_Identity=25.4385964912281, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI42741659, Length=196, Percent_Identity=27.5510204081633, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI48995001, Length=251, Percent_Identity=39.4422310756972, Blast_Score=170, Evalue=1e-43, Organism=Escherichia coli, GI1788472, Length=255, Percent_Identity=33.3333333333333, Blast_Score=159, Evalue=2e-40, Organism=Escherichia coli, GI1788210, Length=234, Percent_Identity=32.9059829059829, Blast_Score=145, Evalue=3e-36, Organism=Escherichia coli, GI1790190, Length=243, Percent_Identity=31.2757201646091, Blast_Score=143, Evalue=1e-35, Organism=Escherichia coli, GI1790525, Length=250, Percent_Identity=32.4, Blast_Score=142, Evalue=3e-35, Organism=Escherichia coli, GI1789991, Length=243, Percent_Identity=32.5102880658436, Blast_Score=140, Evalue=8e-35, Organism=Escherichia coli, GI1788897, Length=237, Percent_Identity=31.6455696202532, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI1786345, Length=244, Percent_Identity=32.3770491803279, Blast_Score=113, Evalue=1e-26, Organism=Escherichia coli, GI1787792, Length=219, Percent_Identity=32.4200913242009, Blast_Score=111, Evalue=6e-26, Organism=Escherichia coli, GI1787712, Length=221, Percent_Identity=34.3891402714932, Blast_Score=107, Evalue=7e-25, Organism=Escherichia coli, GI1787029, Length=225, Percent_Identity=29.3333333333333, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI87082268, Length=242, Percent_Identity=28.9256198347107, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI87081709, Length=225, Percent_Identity=28.8888888888889, Blast_Score=97, Evalue=8e-22, Organism=Escherichia coli, GI1789672, Length=227, Percent_Identity=27.7533039647577, Blast_Score=95, Evalue=4e-21, Organism=Escherichia coli, GI87081791, Length=225, Percent_Identity=29.3333333333333, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1790162, Length=226, Percent_Identity=29.646017699115, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1786872, Length=232, Percent_Identity=31.0344827586207, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI1787370, Length=229, Percent_Identity=28.82096069869, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1790467, Length=226, Percent_Identity=29.2035398230088, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1787758, Length=225, Percent_Identity=31.1111111111111, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI1786803, Length=243, Percent_Identity=27.1604938271605, Blast_Score=84, Evalue=7e-18, Organism=Escherichia coli, GI1786398, Length=239, Percent_Identity=28.0334728033473, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1789962, Length=228, Percent_Identity=28.9473684210526, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1786703, Length=227, Percent_Identity=30.3964757709251, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1787164, Length=225, Percent_Identity=30.6666666666667, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1787089, Length=225, Percent_Identity=28.8888888888889, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1788225, Length=233, Percent_Identity=27.4678111587983, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1788165, Length=219, Percent_Identity=31.9634703196347, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1789864, Length=251, Percent_Identity=25.8964143426295, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1789032, Length=243, Percent_Identity=26.3374485596708, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1790544, Length=232, Percent_Identity=30.1724137931034, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1786253, Length=201, Percent_Identity=31.8407960199005, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI87082267, Length=220, Percent_Identity=30.4545454545455, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI87081782, Length=241, Percent_Identity=29.8755186721992, Blast_Score=81, Evalue=9e-17, Organism=Escherichia coli, GI87081834, Length=214, Percent_Identity=28.9719626168224, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI48994943, Length=243, Percent_Identity=27.5720164609054, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1789873, Length=207, Percent_Identity=32.3671497584541, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1787500, Length=221, Percent_Identity=28.5067873303167, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1789891, Length=216, Percent_Identity=29.6296296296296, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1788761, Length=224, Percent_Identity=27.2321428571429, Blast_Score=77, Evalue=9e-16, Organism=Escherichia coli, GI1787105, Length=217, Percent_Identity=27.6497695852535, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1790739, Length=231, Percent_Identity=25.974025974026, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1786563, Length=221, Percent_Identity=28.9592760180996, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1788644, Length=231, Percent_Identity=26.8398268398268, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI1787759, Length=244, Percent_Identity=32.7868852459016, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI1790534, Length=216, Percent_Identity=30.0925925925926, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI1786319, Length=206, Percent_Identity=29.126213592233, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI2367384, Length=186, Percent_Identity=25.2688172043011, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1789593, Length=235, Percent_Identity=25.531914893617, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1786654, Length=242, Percent_Identity=29.3388429752066, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1788450, Length=221, Percent_Identity=26.2443438914027, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI1788506, Length=216, Percent_Identity=26.3888888888889, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI145693107, Length=255, Percent_Identity=26.6666666666667, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1788540, Length=87, Percent_Identity=40.2298850574713, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1787112, Length=199, Percent_Identity=31.1557788944724, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1788053, Length=208, Percent_Identity=27.4038461538462, Blast_Score=61, Evalue=8e-11, Organism=Caenorhabditis elegans, GI115534520, Length=239, Percent_Identity=29.2887029288703, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI71983523, Length=217, Percent_Identity=26.2672811059908, Blast_Score=74, Evalue=5e-14, Organism=Caenorhabditis elegans, GI71983510, Length=217, Percent_Identity=26.2672811059908, Blast_Score=74, Evalue=5e-14, Organism=Caenorhabditis elegans, GI71983516, Length=217, Percent_Identity=26.2672811059908, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17558664, Length=193, Percent_Identity=31.0880829015544, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17565586, Length=219, Percent_Identity=27.8538812785388, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI115533608, Length=228, Percent_Identity=28.9473684210526, Blast_Score=70, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17541710, Length=194, Percent_Identity=30.4123711340206, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17565938, Length=196, Percent_Identity=32.1428571428571, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17543740, Length=197, Percent_Identity=29.4416243654822, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17510237, Length=231, Percent_Identity=23.3766233766234, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6324314, Length=192, Percent_Identity=30.7291666666667, Blast_Score=75, Evalue=8e-15, Organism=Drosophila melanogaster, GI116007184, Length=230, Percent_Identity=30.8695652173913, Blast_Score=97, Evalue=2e-20, Organism=Drosophila melanogaster, GI221500365, Length=230, Percent_Identity=30.8695652173913, Blast_Score=96, Evalue=2e-20, Organism=Drosophila melanogaster, GI221512771, Length=222, Percent_Identity=27.027027027027, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24666092, Length=232, Percent_Identity=25.8620689655172, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24643674, Length=227, Percent_Identity=23.7885462555066, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI28571209, Length=211, Percent_Identity=25.5924170616114, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24582014, Length=212, Percent_Identity=29.7169811320755, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI24582012, Length=212, Percent_Identity=29.7169811320755, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI17136662, Length=199, Percent_Identity=26.6331658291457, Blast_Score=64, Evalue=9e-11, Organism=Drosophila melanogaster, GI28573571, Length=226, Percent_Identity=24.3362831858407, Blast_Score=64, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR015862 - InterPro: IPR015861 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: =3.6.3.17 [H]
Molecular weight: Translated: 28511; Mature: 28379
Theoretical pI: Translated: 9.43; Mature: 9.43
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTPASHDTILALENVSKYFGKVIALSGVTLRVKRGEVHCLLGDNGAGKSTLIKTLAGVH CCCCCCCCEEEEHHHHHHHHHHEEEECCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCC PPSDGQYLVDGKPVLFDSPKDALDLGIATVYQDLALVPLLSVARNFFMGREPQKKLFGLF CCCCCCEEECCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH NVMDLDSSARIARAKLAEMGINVRDAHQPIGTMSGGERQCLAIARAIHFGARVLILDEPT HHCCCCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEECCC AALGVKQSLNVLKLIHAARAKGISVIFITHNVHHAYPIGDSFTLLNRGRSLGTFTKDTIS HHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEECCCCCCHHHHCCCCCCCCHHHHCC KNEVLDMMAGGAEMQKMIAELDGATI HHHHHHHHCCCHHHHHHHHHHCCCCC >Mature Secondary Structure STPASHDTILALENVSKYFGKVIALSGVTLRVKRGEVHCLLGDNGAGKSTLIKTLAGVH CCCCCCCEEEEHHHHHHHHHHEEEECCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCC PPSDGQYLVDGKPVLFDSPKDALDLGIATVYQDLALVPLLSVARNFFMGREPQKKLFGLF CCCCCCEEECCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH NVMDLDSSARIARAKLAEMGINVRDAHQPIGTMSGGERQCLAIARAIHFGARVLILDEPT HHCCCCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEECCC AALGVKQSLNVLKLIHAARAKGISVIFITHNVHHAYPIGDSFTLLNRGRSLGTFTKDTIS HHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEECCCCCCHHHHCCCCCCCCHHHHCC KNEVLDMMAGGAEMQKMIAELDGATI HHHHHHHHCCCHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA