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The map label for this gene is dppB [H]

Identifier: 126455063

GI number: 126455063

Start: 240025

End: 241035

Strand: Direct

Name: dppB [H]

Synonym: BURPS1106A_0257

Alternate gene names: 126455063

Gene position: 240025-241035 (Clockwise)

Preceding gene: 126454101

Following gene: 126452395

Centisome position: 6.02

GC content: 66.77

Gene sequence:

>1011_bases
ATGTTCCGATTCGTCTTGCGCCGCGTGGGCATGGTGATCCCGACCTTCATCGGCATCACGGTGCTCGCGTTCGCGCTGAT
CCACCTGATACCGGGCGACCCCATCGAAGTGATGATGGGCGAGCGCGGCGTCGATCCGACGATGCACGCGCAAGCGCTGC
ACCGCCTCGGGCTCGACGAGCCGCTTCCCATGCAATATCTGCACTACGTCGGCCGCGCGCTGCACGGCGACCTGGGCACG
TCGATCATCACCAACACGAGCGTGATGGGCGAGTTCCTCGCGCGCTTTCCGGCGACGGTCGAGCTGTCGCTCTGCGCGCT
CGCGTTCGCGCTCGCGCTCGGGCTGCCGGCCGGCGTGTTCGCCGCGCTCAGGCGCGGCACGATCGTCGATCACGGCGTGA
TGGGTACGGCGCTCACCGGCTATTCGATGCCGATCTTCTGGTGGGGGCTCATCCTCATCATGGTGTTCTCGGCGACGCTC
GGCTGGACGCCCGTGTCGGGCCGCATCGCGGTGGAATACGAGATTCCTCATACGACGGGCTTCATGCTGATCGACACGCT
GCTCTCCGGCGAGGAGGGCGCGTTCGCGTCGGCGGTGAGCCACCTGATCCTGCCCGCGATCGTGCTCGGCACGATCCCGC
TCGCGGTGATCGCGCGGATGACGCGTTCGTCGATGCTCGAAGTGCTGCGCGAGGATTACATCCGCACCGCGCGCGCGAAG
GGGCTGTCGCCCGCGCGCATCGTCGTCGTGCATGCGCTGCGCAATGCGCTGATTCCGGTCGTCACGGTGATCGGCCTGCA
GGTCGGCACGCTGCTCGCGGGCGCCGTGCTCACCGAGACACTGTTCTCGTGGCCGGGTGTCGGCAAGTGGCTGATCGACG
CGATCGGCCGCCGCGACTATCCGGTCGTGCAAGGCGGCATCCTGATGATCGCGACGCTCGTGATCGTCGTGAACCTGGTC
GTCGATCTGCTGTACGGCGTGCTGAATCCGCGCATTCGCCATACGAGGTAA

Upstream 100 bases:

>100_bases
CGCCGTTAGCCCGACTGCACGATAATCACCCGGCGACGGGGGGCCATGAGCTCCTCGTCGCCGGTCGCACATTTCCCACA
AGAAAATATCGAGAAGCGTC

Downstream 100 bases:

>100_bases
TCGAACATGCATCCCCACACTCGTATCCATTCGCTGCGCCGGCGCTCGCGCGCCGCCGCGGCATTCGAGCGCGCATGCGC
GGCCACGCGGGAGGCACGAT

Product: dipeptide ABC transporter, permease protein DppB

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MFRFVLRRVGMVIPTFIGITVLAFALIHLIPGDPIEVMMGERGVDPTMHAQALHRLGLDEPLPMQYLHYVGRALHGDLGT
SIITNTSVMGEFLARFPATVELSLCALAFALALGLPAGVFAALRRGTIVDHGVMGTALTGYSMPIFWWGLILIMVFSATL
GWTPVSGRIAVEYEIPHTTGFMLIDTLLSGEEGAFASAVSHLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRTARAK
GLSPARIVVVHALRNALIPVVTVIGLQVGTLLAGAVLTETLFSWPGVGKWLIDAIGRRDYPVVQGGILMIATLVIVVNLV
VDLLYGVLNPRIRHTR

Sequences:

>Translated_336_residues
MFRFVLRRVGMVIPTFIGITVLAFALIHLIPGDPIEVMMGERGVDPTMHAQALHRLGLDEPLPMQYLHYVGRALHGDLGT
SIITNTSVMGEFLARFPATVELSLCALAFALALGLPAGVFAALRRGTIVDHGVMGTALTGYSMPIFWWGLILIMVFSATL
GWTPVSGRIAVEYEIPHTTGFMLIDTLLSGEEGAFASAVSHLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRTARAK
GLSPARIVVVHALRNALIPVVTVIGLQVGTLLAGAVLTETLFSWPGVGKWLIDAIGRRDYPVVQGGILMIATLVIVVNLV
VDLLYGVLNPRIRHTR
>Mature_336_residues
MFRFVLRRVGMVIPTFIGITVLAFALIHLIPGDPIEVMMGERGVDPTMHAQALHRLGLDEPLPMQYLHYVGRALHGDLGT
SIITNTSVMGEFLARFPATVELSLCALAFALALGLPAGVFAALRRGTIVDHGVMGTALTGYSMPIFWWGLILIMVFSATL
GWTPVSGRIAVEYEIPHTTGFMLIDTLLSGEEGAFASAVSHLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRTARAK
GLSPARIVVVHALRNALIPVVTVIGLQVGTLLAGAVLTETLFSWPGVGKWLIDAIGRRDYPVVQGGILMIATLVIVVNLV
VDLLYGVLNPRIRHTR

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=339, Percent_Identity=65.4867256637168, Blast_Score=457, Evalue=1e-130,
Organism=Escherichia coli, GI1787053, Length=339, Percent_Identity=40.117994100295, Blast_Score=255, Evalue=3e-69,
Organism=Escherichia coli, GI1787761, Length=316, Percent_Identity=47.7848101265823, Blast_Score=238, Evalue=4e-64,
Organism=Escherichia coli, GI1787550, Length=274, Percent_Identity=39.7810218978102, Blast_Score=210, Evalue=1e-55,
Organism=Escherichia coli, GI1789888, Length=336, Percent_Identity=36.3095238095238, Blast_Score=209, Evalue=1e-55,
Organism=Escherichia coli, GI1787497, Length=335, Percent_Identity=34.3283582089552, Blast_Score=195, Evalue=3e-51,
Organism=Escherichia coli, GI1788504, Length=369, Percent_Identity=24.390243902439, Blast_Score=125, Evalue=3e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36311; Mature: 36311

Theoretical pI: Translated: 9.00; Mature: 9.00

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRFVLRRVGMVIPTFIGITVLAFALIHLIPGDPIEVMMGERGVDPTMHAQALHRLGLDE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHCCCCC
PLPMQYLHYVGRALHGDLGTSIITNTSVMGEFLARFPATVELSLCALAFALALGLPAGVF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHH
AALRRGTIVDHGVMGTALTGYSMPIFWWGLILIMVFSATLGWTPVSGRIAVEYEIPHTTG
HHHHCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCH
FMLIDTLLSGEEGAFASAVSHLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRTARAK
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GLSPARIVVVHALRNALIPVVTVIGLQVGTLLAGAVLTETLFSWPGVGKWLIDAIGRRDY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC
PVVQGGILMIATLVIVVNLVVDLLYGVLNPRIRHTR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MFRFVLRRVGMVIPTFIGITVLAFALIHLIPGDPIEVMMGERGVDPTMHAQALHRLGLDE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHCCCCC
PLPMQYLHYVGRALHGDLGTSIITNTSVMGEFLARFPATVELSLCALAFALALGLPAGVF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHH
AALRRGTIVDHGVMGTALTGYSMPIFWWGLILIMVFSATLGWTPVSGRIAVEYEIPHTTG
HHHHCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCH
FMLIDTLLSGEEGAFASAVSHLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRTARAK
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GLSPARIVVVHALRNALIPVVTVIGLQVGTLLAGAVLTETLFSWPGVGKWLIDAIGRRDY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC
PVVQGGILMIATLVIVVNLVVDLLYGVLNPRIRHTR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]