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The map label for this gene is dppC [H]

Identifier: 126452395

GI number: 126452395

Start: 241110

End: 242051

Strand: Direct

Name: dppC [H]

Synonym: BURPS1106A_0258

Alternate gene names: 126452395

Gene position: 241110-242051 (Clockwise)

Preceding gene: 126455063

Following gene: 126453266

Centisome position: 6.05

GC content: 70.38

Gene sequence:

>942_bases
ATGCGCGGCCACGCGGGAGGCACGATGAGCAACATGCAAAACGCCATGCCGTCGCAGGCGGCGCCCGCAAGCGGGCGCGT
GCTCGCGCTGCGCGAATTCTGGGCGAATTTCTCCCGCAACCGCGGCGCGGTCGGCGCCGGCATCGTCGTGCTCGCGCTGG
TGGCCGTCGCGCTCCTCGCGCCGGTGCTCGCGCCGCACAGCCCGATCGAGCAGTACCGCGACTACGTGAAGATCCCGCCC
GCGTGGCTGGCGGGCGGCAACTGGCAATTCGTGCTCGGCACCGACGAAGCGGGCCGCGACATCCTCTCGCGGCTGATGTA
CGGCGCGCGGATGTCGTTCTGGATCGGCTTCGTCTCGGTCGTGCTCGCGCTGATTCCGGGCGTCGTGCTCGGGCTCGTCG
CCGCGTTCTTCCAGAAATGGGCCGACACGCCCGTGATGCGCGTGATGGACGTGCTGCTCGCGCTGCCGTCGCTGCTGCTC
GCCGTCGCGGTCGTCGCGATCATCGGCCCGGGCCTCACCAACACGATGTTCGCGATCGCGATCGTCGCGCTGCCCGCTTA
CGTGCGCCTCACGCGCGCGTCGGCGCTCGGCGAGCTGCAGAAGGAGTACGTGACGGCCTCGCGCGTCGCGGGCGCGGGCA
CGCCGCGGCTGATGTTCTCGCAGGTGCTGCCGAACTGCACGGCGCCGCTCATCGTGCAGGCGACGCTCGGCTTCTCGTCG
GCGATCCTCGATGCGGCGGCGCTCGGCTTTCTCGGCCTCGGCGTGCAGCCGCCGACGGCCGAGTGGGGCGCGATGCTCGC
GTCCGCGCGCGACTACATCGACAACGCATGGTGGATCGTCACGATGCCGGGCCTGTCGATCCTGATCTCGGTGCTCGCGA
TCAACCTGCTCGGCGACGGGCTGCGCGACGCGCTCGATCCCAAACTCAAACGGATGGCCTGA

Upstream 100 bases:

>100_bases
ATCCGCGCATTCGCCATACGAGGTAATCGAACATGCATCCCCACACTCGTATCCATTCGCTGCGCCGGCGCTCGCGCGCC
GCCGCGGCATTCGAGCGCGC

Downstream 100 bases:

>100_bases
CATGAGCGATTTATTGACCATCCGCAATCTCGCGGTGAACTTCAGCGGGCTGCCCGCGGTCGACAGGATCAACCTGTCCA
TCGCGCGCGGCGAAGTGGTC

Product: dipeptide ABC transporter, permease protein DppC

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MRGHAGGTMSNMQNAMPSQAAPASGRVLALREFWANFSRNRGAVGAGIVVLALVAVALLAPVLAPHSPIEQYRDYVKIPP
AWLAGGNWQFVLGTDEAGRDILSRLMYGARMSFWIGFVSVVLALIPGVVLGLVAAFFQKWADTPVMRVMDVLLALPSLLL
AVAVVAIIGPGLTNTMFAIAIVALPAYVRLTRASALGELQKEYVTASRVAGAGTPRLMFSQVLPNCTAPLIVQATLGFSS
AILDAAALGFLGLGVQPPTAEWGAMLASARDYIDNAWWIVTMPGLSILISVLAINLLGDGLRDALDPKLKRMA

Sequences:

>Translated_313_residues
MRGHAGGTMSNMQNAMPSQAAPASGRVLALREFWANFSRNRGAVGAGIVVLALVAVALLAPVLAPHSPIEQYRDYVKIPP
AWLAGGNWQFVLGTDEAGRDILSRLMYGARMSFWIGFVSVVLALIPGVVLGLVAAFFQKWADTPVMRVMDVLLALPSLLL
AVAVVAIIGPGLTNTMFAIAIVALPAYVRLTRASALGELQKEYVTASRVAGAGTPRLMFSQVLPNCTAPLIVQATLGFSS
AILDAAALGFLGLGVQPPTAEWGAMLASARDYIDNAWWIVTMPGLSILISVLAINLLGDGLRDALDPKLKRMA
>Mature_313_residues
MRGHAGGTMSNMQNAMPSQAAPASGRVLALREFWANFSRNRGAVGAGIVVLALVAVALLAPVLAPHSPIEQYRDYVKIPP
AWLAGGNWQFVLGTDEAGRDILSRLMYGARMSFWIGFVSVVLALIPGVVLGLVAAFFQKWADTPVMRVMDVLLALPSLLL
AVAVVAIIGPGLTNTMFAIAIVALPAYVRLTRASALGELQKEYVTASRVAGAGTPRLMFSQVLPNCTAPLIVQATLGFSS
AILDAAALGFLGLGVQPPTAEWGAMLASARDYIDNAWWIVTMPGLSILISVLAINLLGDGLRDALDPKLKRMA

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789964, Length=282, Percent_Identity=59.2198581560284, Blast_Score=298, Evalue=4e-82,
Organism=Escherichia coli, GI1787054, Length=297, Percent_Identity=41.4141414141414, Blast_Score=217, Evalue=8e-58,
Organism=Escherichia coli, GI1787760, Length=265, Percent_Identity=43.0188679245283, Blast_Score=208, Evalue=4e-55,
Organism=Escherichia coli, GI1787549, Length=293, Percent_Identity=42.6621160409556, Blast_Score=199, Evalue=1e-52,
Organism=Escherichia coli, GI1789889, Length=230, Percent_Identity=40.8695652173913, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1787498, Length=283, Percent_Identity=29.6819787985866, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI1788505, Length=226, Percent_Identity=26.5486725663717, Blast_Score=81, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33089; Mature: 33089

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGHAGGTMSNMQNAMPSQAAPASGRVLALREFWANFSRNRGAVGAGIVVLALVAVALLA
CCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
PVLAPHSPIEQYRDYVKIPPAWLAGGNWQFVLGTDEAGRDILSRLMYGARMSFWIGFVSV
HHHCCCCHHHHHHHHCCCCCHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
VLALIPGVVLGLVAAFFQKWADTPVMRVMDVLLALPSLLLAVAVVAIIGPGLTNTMFAIA
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
IVALPAYVRLTRASALGELQKEYVTASRVAGAGTPRLMFSQVLPNCTAPLIVQATLGFSS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHCHHH
AILDAAALGFLGLGVQPPTAEWGAMLASARDYIDNAWWIVTMPGLSILISVLAINLLGDG
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHH
LRDALDPKLKRMA
HHHHHCHHHHHCC
>Mature Secondary Structure
MRGHAGGTMSNMQNAMPSQAAPASGRVLALREFWANFSRNRGAVGAGIVVLALVAVALLA
CCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
PVLAPHSPIEQYRDYVKIPPAWLAGGNWQFVLGTDEAGRDILSRLMYGARMSFWIGFVSV
HHHCCCCHHHHHHHHCCCCCHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
VLALIPGVVLGLVAAFFQKWADTPVMRVMDVLLALPSLLLAVAVVAIIGPGLTNTMFAIA
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
IVALPAYVRLTRASALGELQKEYVTASRVAGAGTPRLMFSQVLPNCTAPLIVQATLGFSS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHCHHH
AILDAAALGFLGLGVQPPTAEWGAMLASARDYIDNAWWIVTMPGLSILISVLAINLLGDG
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHH
LRDALDPKLKRMA
HHHHHCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800; 8550458 [H]