| Definition | Burkholderia pseudomallei 1106a chromosome I, complete genome. |
|---|---|
| Accession | NC_009076 |
| Length | 3,988,455 |
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The map label for this gene is 126455001
Identifier: 126455001
GI number: 126455001
Start: 303108
End: 304409
Strand: Direct
Name: 126455001
Synonym: BURPS1106A_0330
Alternate gene names: NA
Gene position: 303108-304409 (Clockwise)
Preceding gene: 126452841
Following gene: 126452324
Centisome position: 7.6
GC content: 73.58
Gene sequence:
>1302_bases ATGTATTCGATGCTTCGCGCGCCGCACGGCCGGCGTGCGCGCCTGCACGCGCGCACGCTCGTCGCGGCGCTCACTTTCGC GAACGCCGCCGCCGCGTTCGCCCAATCGGCGCCGCTCACGCTCGACGCCGCGCTGCAATCGGCCGCCGACCGATCGGCGG CGATGCAGGCGGCGCAGGCGTCCGTCCAGGCGAGCGCCGAGCTCGCCGTCAAGGCCGGGCAATTGCCCGATCCGATGCTG AAGGCCGGCATCGACAATCTGCCCGTCGACGGCCCGCAACGCTTCACGATCGGCCAGGAATCGATGACGATGCGCCGCAT CGGCATCGCGCAGGAGTGGGTGTCGGGCGACAAGCGCCGGCTGCGCACCGCGCTCGCGAACGAAGTCGTCGGCCGCGAAC GCGCCGGCTATCTCGCGCAACTCGCGGACGTTCGCCGGCAGACGGCCATCGCGTGGCTTGACGCCGCATACGCGAAGAAG GCGCTCGCGCTGCAGCGCGAACTCGCCGACGAGATGAACCGCGAGCTCGCCGCGACGCAGGCCGCGTATCGCGGCGCGAA GGCGACGGCCGCCGACGCCCTGCAGGCGCGCGCGCTGCTCGCGCAGGCGCGCGACCGGCAAGCGAACGCCCGCCAGGCGT TCGACACCGCGCTGATCGGCCTGTCTCGCTGGGTTGCCGCGCCGACACTCGACGTGGCGGGCGAGCCGCCCGCGCCGGTG TCGTTCGTGCCGTCGCTGCCGCCCGACGAGCTGCGCCGTGTGCAGCCGACGCTGATCGCGGCCGACGAGGACGTGGAGGT GGCCGACGCCGACGTCGCGCTCGCCGCGAGCGAGCGGCGTCCGAACTGGACGTGGGAGATCGCGTATCAGCAGCGCGGCG CGCCGTACGCGAACATGGTGTCGATCGGCGTCACGATTCCGCTGCCGCTCGATCGGCGCGATCGGCAGGACCGCGACGTC GCGCAAAAGCGCGCGCTCGCCACGAAGGCGCGGCTGATGTACGAGGATGCGCGGCGTCAGGTCGACGCGGATATCCGCAC GCAATCGGCGACGCTCGAGAGCGGCCGCGCGCGGCTCGCGGAGCTCGGGCGAGCGCTGCTGCCCGCGGCCGACGAGCGCG TGCGCCTTGCCGACGCCGCGTACCGCGCGGGCGCGGGCTCGCTCGCCGACGCGTTCGCCGCGCGTCGCGCGCGGCTCGAT GCGCGGCTCCAGGTGCTCGATCTCGAACGCGACGTCGCGCGAGCGTGGGCGCAGCTCGACTATCAGATCGTCCCGTCGGC GATGCTCGCCGCCGCACAGTGA
Upstream 100 bases:
>100_bases AACCCCGCTTCCTTCCTACAGGTTCGCCGCACGCGCGGCGGGATCGTCCCGCATTCGGGGCGCGGAATCCGTTCGGGATT CCATCGCTGGGGTTCAACAC
Downstream 100 bases:
>100_bases AGGAGCGGACATGAACCATATTCGCTTGACCCGCGCGGCGCTGGCCGTGCTTGCCGCCGTCGCGCTGTCCGCGGCCGGCT ACTTCGCCGGCGCTCGCTTC
Product: outer membrane efflux protein
Products: NA
Alternate protein names: Outer Membrane Cation Efflux Protein; Cobalt-Zinc-Cadmium Resistance Outer Membrane Porin; Efflux System Outer Membrane Protein; Outer Membrane Silver Efflux Protein; Outer Membrane Cation Efflux System Protein CzcC; CzcC Family Heavy Metal RND Efflux Outer Membrane Protein
Number of amino acids: Translated: 433; Mature: 433
Protein sequence:
>433_residues MYSMLRAPHGRRARLHARTLVAALTFANAAAAFAQSAPLTLDAALQSAADRSAAMQAAQASVQASAELAVKAGQLPDPML KAGIDNLPVDGPQRFTIGQESMTMRRIGIAQEWVSGDKRRLRTALANEVVGRERAGYLAQLADVRRQTAIAWLDAAYAKK ALALQRELADEMNRELAATQAAYRGAKATAADALQARALLAQARDRQANARQAFDTALIGLSRWVAAPTLDVAGEPPAPV SFVPSLPPDELRRVQPTLIAADEDVEVADADVALAASERRPNWTWEIAYQQRGAPYANMVSIGVTIPLPLDRRDRQDRDV AQKRALATKARLMYEDARRQVDADIRTQSATLESGRARLAELGRALLPAADERVRLADAAYRAGAGSLADAFAARRARLD ARLQVLDLERDVARAWAQLDYQIVPSAMLAAAQ
Sequences:
>Translated_433_residues MYSMLRAPHGRRARLHARTLVAALTFANAAAAFAQSAPLTLDAALQSAADRSAAMQAAQASVQASAELAVKAGQLPDPML KAGIDNLPVDGPQRFTIGQESMTMRRIGIAQEWVSGDKRRLRTALANEVVGRERAGYLAQLADVRRQTAIAWLDAAYAKK ALALQRELADEMNRELAATQAAYRGAKATAADALQARALLAQARDRQANARQAFDTALIGLSRWVAAPTLDVAGEPPAPV SFVPSLPPDELRRVQPTLIAADEDVEVADADVALAASERRPNWTWEIAYQQRGAPYANMVSIGVTIPLPLDRRDRQDRDV AQKRALATKARLMYEDARRQVDADIRTQSATLESGRARLAELGRALLPAADERVRLADAAYRAGAGSLADAFAARRARLD ARLQVLDLERDVARAWAQLDYQIVPSAMLAAAQ >Mature_433_residues MYSMLRAPHGRRARLHARTLVAALTFANAAAAFAQSAPLTLDAALQSAADRSAAMQAAQASVQASAELAVKAGQLPDPML KAGIDNLPVDGPQRFTIGQESMTMRRIGIAQEWVSGDKRRLRTALANEVVGRERAGYLAQLADVRRQTAIAWLDAAYAKK ALALQRELADEMNRELAATQAAYRGAKATAADALQARALLAQARDRQANARQAFDTALIGLSRWVAAPTLDVAGEPPAPV SFVPSLPPDELRRVQPTLIAADEDVEVADADVALAASERRPNWTWEIAYQQRGAPYANMVSIGVTIPLPLDRRDRQDRDV AQKRALATKARLMYEDARRQVDADIRTQSATLESGRARLAELGRALLPAADERVRLADAAYRAGAGSLADAFAARRARLD ARLQVLDLERDVARAWAQLDYQIVPSAMLAAAQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46834; Mature: 46834
Theoretical pI: Translated: 10.10; Mature: 10.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYSMLRAPHGRRARLHARTLVAALTFANAAAAFAQSAPLTLDAALQSAADRSAAMQAAQA CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH SVQASAELAVKAGQLPDPMLKAGIDNLPVDGPQRFTIGQESMTMRRIGIAQEWVSGDKRR HHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHCCHHHH LRTALANEVVGRERAGYLAQLADVRRQTAIAWLDAAYAKKALALQRELADEMNRELAATQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AAYRGAKATAADALQARALLAQARDRQANARQAFDTALIGLSRWVAAPTLDVAGEPPAPV HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC SFVPSLPPDELRRVQPTLIAADEDVEVADADVALAASERRPNWTWEIAYQQRGAPYANMV CCCCCCCHHHHHHCCCCEEECCCCCEECCCCEEEEECCCCCCCEEEEEECCCCCCHHHEE SIGVTIPLPLDRRDRQDRDVAQKRALATKARLMYEDARRQVDADIRTQSATLESGRARLA EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH ELGRALLPAADERVRLADAAYRAGAGSLADAFAARRARLDARLQVLDLERDVARAWAQLD HHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHCC YQIVPSAMLAAAQ HHHHHHHHHHCCC >Mature Secondary Structure MYSMLRAPHGRRARLHARTLVAALTFANAAAAFAQSAPLTLDAALQSAADRSAAMQAAQA CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH SVQASAELAVKAGQLPDPMLKAGIDNLPVDGPQRFTIGQESMTMRRIGIAQEWVSGDKRR HHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHCCHHHH LRTALANEVVGRERAGYLAQLADVRRQTAIAWLDAAYAKKALALQRELADEMNRELAATQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AAYRGAKATAADALQARALLAQARDRQANARQAFDTALIGLSRWVAAPTLDVAGEPPAPV HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC SFVPSLPPDELRRVQPTLIAADEDVEVADADVALAASERRPNWTWEIAYQQRGAPYANMV CCCCCCCHHHHHHCCCCEEECCCCCEECCCCEEEEECCCCCCCEEEEEECCCCCCHHHEE SIGVTIPLPLDRRDRQDRDVAQKRALATKARLMYEDARRQVDADIRTQSATLESGRARLA EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH ELGRALLPAADERVRLADAAYRAGAGSLADAFAARRARLDARLQVLDLERDVARAWAQLD HHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHCC YQIVPSAMLAAAQ HHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA