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The map label for this gene is ydcO [H]

Identifier: 126454753

GI number: 126454753

Start: 1156030

End: 1157247

Strand: Reverse

Name: ydcO [H]

Synonym: BURPS1106A_1176

Alternate gene names: 126454753

Gene position: 1157247-1156030 (Counterclockwise)

Preceding gene: 126453530

Following gene: 126451857

Centisome position: 29.01

GC content: 71.02

Gene sequence:

>1218_bases
ATGAGCAGCCAGCCGCCCGCCTCCAACCTGCCGCGCGTCGCCGCGCGAGCGAATTTTTTCACCGACACGTCGCCGTCCGC
GCTCGTCGCGGGCTTCGTCGCGATGATGACGGGCTATACGAGCTCGCTCGTGCTGATGTTCCAGGCCGGCCGCGCCGCGC
ACCTGAGCGACGCGCAGATCTCGTCGTGGATCTGGGCGCTGTCGATCGGCATGGCCGTGACGACGATCGGGTTGTCGCTG
CGGTATCGCGCGCCGATCGTCGTCGCGTGGTCGACGCCCGGCGCGGCGCTCCTCGTCGCGTCGCTGCCCGGCGTCGCGTA
TTCGGACGCGATCGGCGCGTTCGTCGTCTGCGCGCTGCTGCTCGCCGCCGTCGGCGCGAGCGGCCTGTTCGACACGCTGA
TGCGCCGGATTCCGTCCGGCATCGCCGCTGCCCTCCTCGCCGGCATCCTGTTCGAGATCGGCATCGAGATCTTCCGCGCC
GCGCAGTTCCAGACCGCGCTCGTGCTCGCGATGTTCTTCACGTACCTGATCGTCAAGCGCGCGGCGCCGCGCTATGCGAT
CGTCGCGACGCTCGCCGCGGGCGTCGCGGCCGCGGGCGCGCTCGGCCTGCTCGACTTCGGCCGCTTTCACGTCGCGCTCG
CGCGGCCCGTGTTCACGGCGCCGTCGTTCTCGATCCCGGCGATCGTGAGCATCGGCATTCCGCTGTTCGTCGTCGCGATG
GCGTCGCAGAACGTGCCCGGCATCGCGGTGCTGCGCGCGGACGGCTACGCCACGCCGTCGTCGCCGCTCATCGCGACGAC
GGGCATCGCGTCCGTCGTGCTCGCGCCGTTCGGCTCGCACGGAATCAACCTCGCCGCGATCACGGCCGCGATCTGCACCG
GCCCCGAGGCGCACGACGATCGCGCGAAGCGCTACACGGCGGCCGTCTGGTGCGGCACGTTCTATCTCGTCGCGGGCGTG
TTCGGCGCGACGATCGCCGCGCTCTTCGGCGCGTTGCCGAAGGCGCTCGTCGTATCGGTGGCCGCGCTCGCGCTGTTCGG
CTCGATCATGAGCGGCCTCACCAACGCGATGCAGGACGCGCGCCAGCGCGAAGCCGCGCTCGTCACGTTCATGGTGACCG
CCTCCGGCCTCACGCTGCTGTCGATCGGCTCGGCATTCTGGGGGCTCGTGGCGGGCGTGCTCACGCAAGCGATCCTCAAC
GCGCGCCGCATCGCCTGA

Upstream 100 bases:

>100_bases
GCACGCTGAGCAAGTGACGCGCCCGCCGCGCGCGTCGCCCCGCCGATTCCGCCGTTTTTCAACGCTTCACCTTCACCACC
CCGGACCCGACGTTTCACCG

Downstream 100 bases:

>100_bases
CGCCGGTCACGGCACGCGCGGCCGGATCGGGCACGGTTCGTGCGCGATCCGCATGCTTCGCATGGGCCGCCGCGCCGCGC
ACGCGGTAGGCGGCCGTTCG

Product: benzoate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 404

Protein sequence:

>405_residues
MSSQPPASNLPRVAARANFFTDTSPSALVAGFVAMMTGYTSSLVLMFQAGRAAHLSDAQISSWIWALSIGMAVTTIGLSL
RYRAPIVVAWSTPGAALLVASLPGVAYSDAIGAFVVCALLLAAVGASGLFDTLMRRIPSGIAAALLAGILFEIGIEIFRA
AQFQTALVLAMFFTYLIVKRAAPRYAIVATLAAGVAAAGALGLLDFGRFHVALARPVFTAPSFSIPAIVSIGIPLFVVAM
ASQNVPGIAVLRADGYATPSSPLIATTGIASVVLAPFGSHGINLAAITAAICTGPEAHDDRAKRYTAAVWCGTFYLVAGV
FGATIAALFGALPKALVVSVAALALFGSIMSGLTNAMQDARQREAALVTFMVTASGLTLLSIGSAFWGLVAGVLTQAILN
ARRIA

Sequences:

>Translated_405_residues
MSSQPPASNLPRVAARANFFTDTSPSALVAGFVAMMTGYTSSLVLMFQAGRAAHLSDAQISSWIWALSIGMAVTTIGLSL
RYRAPIVVAWSTPGAALLVASLPGVAYSDAIGAFVVCALLLAAVGASGLFDTLMRRIPSGIAAALLAGILFEIGIEIFRA
AQFQTALVLAMFFTYLIVKRAAPRYAIVATLAAGVAAAGALGLLDFGRFHVALARPVFTAPSFSIPAIVSIGIPLFVVAM
ASQNVPGIAVLRADGYATPSSPLIATTGIASVVLAPFGSHGINLAAITAAICTGPEAHDDRAKRYTAAVWCGTFYLVAGV
FGATIAALFGALPKALVVSVAALALFGSIMSGLTNAMQDARQREAALVTFMVTASGLTLLSIGSAFWGLVAGVLTQAILN
ARRIA
>Mature_404_residues
SSQPPASNLPRVAARANFFTDTSPSALVAGFVAMMTGYTSSLVLMFQAGRAAHLSDAQISSWIWALSIGMAVTTIGLSLR
YRAPIVVAWSTPGAALLVASLPGVAYSDAIGAFVVCALLLAAVGASGLFDTLMRRIPSGIAAALLAGILFEIGIEIFRAA
QFQTALVLAMFFTYLIVKRAAPRYAIVATLAAGVAAAGALGLLDFGRFHVALARPVFTAPSFSIPAIVSIGIPLFVVAMA
SQNVPGIAVLRADGYATPSSPLIATTGIASVVLAPFGSHGINLAAITAAICTGPEAHDDRAKRYTAAVWCGTFYLVAGVF
GATIAALFGALPKALVVSVAALALFGSIMSGLTNAMQDARQREAALVTFMVTASGLTLLSIGSAFWGLVAGVLTQAILNA
RRIA

Specific function: Unknown

COG id: COG3135

COG function: function code Q; Uncharacterized protein involved in benzoate metabolism

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081909, Length=376, Percent_Identity=46.0106382978723, Blast_Score=317, Evalue=9e-88,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004711 [H]

Pfam domain/function: PF03594 BenE [H]

EC number: NA

Molecular weight: Translated: 41480; Mature: 41349

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSQPPASNLPRVAARANFFTDTSPSALVAGFVAMMTGYTSSLVLMFQAGRAAHLSDAQI
CCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHEEECCCCCCCCCHHH
SSWIWALSIGMAVTTIGLSLRYRAPIVVAWSTPGAALLVASLPGVAYSDAIGAFVVCALL
HHHHHHHHHHHHHHHHHHEEEECCCEEEEECCCCCEEHEECCCCCHHHHHHHHHHHHHHH
LAAVGASGLFDTLMRRIPSGIAAALLAGILFEIGIEIFRAAQFQTALVLAMFFTYLIVKR
HHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAPRYAIVATLAAGVAAAGALGLLDFGRFHVALARPVFTAPSFSIPAIVSIGIPLFVVAM
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCHHHHHHHHHHHHHH
ASQNVPGIAVLRADGYATPSSPLIATTGIASVVLAPFGSHGINLAAITAAICTGPEAHDD
HCCCCCCEEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCH
RAKRYTAAVWCGTFYLVAGVFGATIAALFGALPKALVVSVAALALFGSIMSGLTNAMQDA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQREAALVTFMVTASGLTLLSIGSAFWGLVAGVLTQAILNARRIA
HHHHHHHHHEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SSQPPASNLPRVAARANFFTDTSPSALVAGFVAMMTGYTSSLVLMFQAGRAAHLSDAQI
CCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHEEECCCCCCCCCHHH
SSWIWALSIGMAVTTIGLSLRYRAPIVVAWSTPGAALLVASLPGVAYSDAIGAFVVCALL
HHHHHHHHHHHHHHHHHHEEEECCCEEEEECCCCCEEHEECCCCCHHHHHHHHHHHHHHH
LAAVGASGLFDTLMRRIPSGIAAALLAGILFEIGIEIFRAAQFQTALVLAMFFTYLIVKR
HHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAPRYAIVATLAAGVAAAGALGLLDFGRFHVALARPVFTAPSFSIPAIVSIGIPLFVVAM
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCHHHHHHHHHHHHHH
ASQNVPGIAVLRADGYATPSSPLIATTGIASVVLAPFGSHGINLAAITAAICTGPEAHDD
HCCCCCCEEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCH
RAKRYTAAVWCGTFYLVAGVFGATIAALFGALPKALVVSVAALALFGSIMSGLTNAMQDA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQREAALVTFMVTASGLTLLSIGSAFWGLVAGVLTQAILNARRIA
HHHHHHHHHEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]